View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2652_low_10 (Length: 579)

Name: NF2652_low_10
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2652_low_10
NF2652_low_10
[»] chr3 (9 HSPs)
chr3 (290-473)||(37119069-37119252)
chr3 (1-137)||(37119374-37119510)
chr3 (167-262)||(37119249-37119344)
chr3 (1-132)||(37131101-37131232)
chr3 (1-126)||(37135164-37135289)
chr3 (1-108)||(37125064-37125171)
chr3 (182-231)||(37124937-37124986)
chr3 (213-272)||(37135385-37135444)
chr3 (481-561)||(4575800-4575880)
[»] chr5 (1 HSPs)
chr5 (1-138)||(1193926-1194063)
[»] chr7 (1 HSPs)
chr7 (1-138)||(31296978-31297115)
[»] chr4 (5 HSPs)
chr4 (481-561)||(13090694-13090774)
chr4 (481-561)||(22590805-22590885)
chr4 (487-561)||(44743577-44743651)
chr4 (488-561)||(4527746-4527819)
chr4 (481-561)||(14642121-14642201)
[»] chr1 (3 HSPs)
chr1 (1-126)||(20269096-20269221)
chr1 (481-561)||(6578282-6578362)
chr1 (213-272)||(20269317-20269376)
[»] chr6 (1 HSPs)
chr6 (481-561)||(26333513-26333593)
[»] chr2 (1 HSPs)
chr2 (481-561)||(7231621-7231701)
[»] scaffold0005 (1 HSPs)
scaffold0005 (481-561)||(175091-175171)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 9e-90; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 290 - 473
Target Start/End: Complemental strand, 37119252 - 37119069
Alignment:
Q  290 atgtatggtgtgagcatgtttggcgtgactgtgtgtgagtcaaagtttgatgtttattttggtcatttaagacggatattttgtattttttcttcgtatg 389  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  37119252 atgtatggtgtgaccatgtttggcgtgactgtgtgtgagtcaaagtttgatgtttattttggtcatttaagacggattttttgcattttttcttcgtatg 37119153  T
Q  390 ttattagcaaagtaggtagtacttgaaaaaaggcagtacgtgagtacaaaattgagaaagacagttctgaaatcttaattattg 473  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119152 ttattagcaaagtaggcagtacttgaaaaaaggcagtacgtgagtacaaaattgagaaagacagttctgaaatcttaattattg 37119069  T

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Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 37119510 - 37119374
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119510 ggagtggaaagtgcagctgtaaaaggagatagcaaggatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 37119411  T
Q  101 aattctgtcatgcagatttggtgagtgttggtgaagt 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  37119410 aattctgtcatgcagatttggtgagtgttggtgaagt 37119374  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 37119344 - 37119249
Alignment:
Q  167 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37119344 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatcatgtgaatgt 37119249  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 37131232 - 37131101
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||| ||| || |||||||| ||||||| | ||| ||||||||||||||||| ||||||||||||||  ||| || |||||||| ||| || |||||||    
T  37131232 ggagtagaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgctaagaaaga 37131133  T
Q  101 aattctgtcatgcagatttggtgagtgttggt 132  Q
    |||||||||||||||| |||||||||||||||    
T  37131132 aattctgtcatgcagaattggtgagtgttggt 37131101  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 37135164 - 37135289
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||||||| || || ||||||||||||||| ||| ||||||||||| |||||||||||| | || ||| ||| ||||||  ||| |||||| |||||||    
T  37135164 ggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaagaaaga 37135263  T
Q  101 aattctgtcatgcagatttggtgagt 126  Q
    ||||| || |||||||||||||||||    
T  37135264 aattcggttatgcagatttggtgagt 37135289  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 37125171 - 37125064
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||||||||||||||||||| ||||| ||||||| ||| |||| ||||| || |||||| |||||||| ||| || |||||||||||| || |||||||    
T  37125171 ggagtggaaagtgcagctatacaaggacatagcaaggataaaatggaggttacaggagaataaatagactcagttagactcacatgtctgctaagaaaga 37125072  T
Q  101 aattctgt 108  Q
    ||||||||    
T  37125071 aattctgt 37125064  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 37124986 - 37124937
Alignment:
Q  182 cttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagg 231  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  37124986 cttgtgtagctagtattcctcattaccctgtccctgtgtgtgagataagg 37124937  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 37135385 - 37135444
Alignment:
Q  213 ccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgtcatcaagaat 272  Q
    |||||||| |||||||| | |||| |||||||||||||| |||||||||||||| |||||    
T  37135385 ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgtcatctagaat 37135444  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 561
Target Start/End: Original strand, 4575800 - 4575880
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatt 561  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||||||||||||||||| |||||| |||||||||    
T  4575800 aatttattctgaacatttcgattagtttcactatgtgcgcaagtccaaagaaacataacaagtgtctccaatgatgtcatt 4575880  T

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Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 1193926 - 1194063
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| ||| || |||||||| ||| || |||||||    
T  1193926 ggagtggaaagtgcagctataaaaggagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagactcacatttctgctaagaaaga 1194025  T
Q  101 aattctgtcatgcagatttggtgagtgttggtgaagtg 138  Q
    |||||||||||||||| |||||||||||||||||||||    
T  1194026 aattctgtcatgcagaattggtgagtgttggtgaagtg 1194063  T

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Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 31297115 - 31296978
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||| ||| || | |||||| ||| || |||||||    
T  31297115 ggagtggaaagtgcagctataaaagcagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagagtcacatctctgctaagaaaga 31297016  T
Q  101 aattctgtcatgcagatttggtgagtgttggtgaagtg 138  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  31297015 aattatgtcatgcagaattggtgagtgttggtgaagtg 31296978  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 481 - 561
Target Start/End: Complemental strand, 13090774 - 13090694
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatt 561  Q
    |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  13090774 aatttattttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcatt 13090694  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 481 - 561
Target Start/End: Complemental strand, 22590885 - 22590805
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatt 561  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||    
T  22590885 aatttattttgaatatttctattagtctcgctatgtgcacaactccaaagaaacataacaagtgcctccaaggatgtcatt 22590805  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 487 - 561
Target Start/End: Complemental strand, 44743651 - 44743577
Alignment:
Q  487 ttttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatt 561  Q
    |||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  44743651 ttttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcatt 44743577  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 488 - 561
Target Start/End: Original strand, 4527746 - 4527819
Alignment:
Q  488 tttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatt 561  Q
    ||||||| ||| ||||| |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  4527746 tttgaatgtttttattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctctaaggatgtcatt 4527819  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 561
Target Start/End: Complemental strand, 14642201 - 14642121
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatt 561  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||| |||||||||||||||||||| |||||||||    
T  14642201 aatttattctgaacatttcaattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatt 14642121  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 20269096 - 20269221
Alignment:
Q  1 ggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaaga 100  Q
    ||||||||| ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| | || ||| ||| ||||||  ||| |||||| |||||||    
T  20269096 ggagtggaaggtgcaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaagaaaga 20269195  T
Q  101 aattctgtcatgcagatttggtgagt 126  Q
    ||||| || |||||||||||||||||    
T  20269196 aattcggttatgcagatttggtgagt 20269221  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 481 - 561
Target Start/End: Original strand, 6578282 - 6578362
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatt 561  Q
    |||||||||||||| ||||||||| |||| |||| |||| |||| |||||||| |||| ||||||||||||| ||||||||    
T  6578282 aatttattttgaatgtttctattagtctcactatacgcacaactccaaagaaatataataagtgcctccaagaatgtcatt 6578362  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 20269317 - 20269376
Alignment:
Q  213 ccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgtcatcaagaat 272  Q
    |||||||| |||||||| | |||| |||||||||||||| |||||||||||||| |||||    
T  20269317 ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgtcatctagaat 20269376  T

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Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 481 - 561
Target Start/End: Original strand, 26333513 - 26333593
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatt 561  Q
    |||||||||||||| ||||||||| |||||||||||||| |||  ||||||||||| ||||||||||||||||||||||||    
T  26333513 aatttattttgaatgtttctattagtctcgctatgcgcacaaccccaaagaaacattacaagtgcctccaaggatgtcatt 26333593  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 561
Target Start/End: Complemental strand, 7231701 - 7231621
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatt 561  Q
    |||||||| |||| |||||||||| | || ||||| ||  || | ||||| |||||||||||||||||||| |||||||||    
T  7231701 aatttattctgaacatttctattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatt 7231621  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 561
Target Start/End: Original strand, 175091 - 175171
Alignment:
Q  481 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatt 561  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||| |||||||||||||||||||| |||||||||    
T  175091 aatttattctgaacatttcaattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatt 175171  T

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