View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2652_low_14 (Length: 545)

Name: NF2652_low_14
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2652_low_14
NF2652_low_14
[»] chr4 (4 HSPs)
chr4 (116-504)||(53086126-53086514)
chr4 (1-116)||(33369908-33370023)
chr4 (12-117)||(33370820-33370925)
chr4 (393-453)||(32315736-32315796)
[»] chr5 (4 HSPs)
chr5 (252-450)||(12095099-12095297)
chr5 (1-116)||(32943516-32943631)
chr5 (12-115)||(32944429-32944532)
chr5 (400-471)||(22393560-22393631)
[»] chr7 (4 HSPs)
chr7 (1-108)||(32547710-32547817)
chr7 (5-115)||(32548611-32548721)
chr7 (393-449)||(3697314-3697370)
chr7 (392-470)||(35457342-35457422)
[»] chr2 (4 HSPs)
chr2 (374-471)||(18480089-18480186)
chr2 (401-471)||(32504903-32504973)
chr2 (395-453)||(40873545-40873603)
chr2 (392-471)||(44207491-44207570)
[»] chr6 (4 HSPs)
chr6 (355-488)||(9645584-9645717)
chr6 (355-488)||(9651601-9651734)
chr6 (120-188)||(4608846-4608915)
chr6 (352-453)||(4608593-4608694)
[»] chr1 (2 HSPs)
chr1 (393-453)||(15368669-15368729)
chr1 (344-471)||(42377932-42378059)
[»] chr3 (1 HSPs)
chr3 (393-453)||(43088782-43088842)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 116 - 504
Target Start/End: Complemental strand, 53086514 - 53086126
Alignment:
Q  116 tttctttgatccaatacttgcctatatttttctcatccataaccgacaaatcacaatgcatctctccatgtattacttgagcgttatcttgtacataaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53086514 tttctttgatccaatacttgcctatatttttctcatccataaccgacaaatcacaatgcatctctccatgtattacttgagcgttatcttgtacataaat 53086415  T
Q  216 attccttgaagaaaggtcaaagccaattcaagctccttgttttatagattaaattcattgctaattgtgctttcatcaaagttcttgtaggcaactaatt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  53086414 attccttgaagaaaggtcaaagccaattcaagctccttgttttatcgattaaattcattgctaattgtgctttcagtaaagttattgtaggcaactaatt 53086315  T
Q  316 ataatggataacaattatttatacttggatttctttttggatttcttttatgttgcatatttgttttataatgactgatttgccttattttactattaat 415  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53086314 ataatggataacaatcatttatacttggatttctttttggatttattttatgttgcatatttgttttataatgactgatttgccttattttactattaat 53086215  T
Q  416 tataatgttgaattcaacaatttattaattatcttgttgttactataaatttattttccggctattctcttatgataaaagcaacatag 504  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53086214 tataatgttgaattcgacaatttgttaattatcttattgttactataaatttattttccggctattcttttatgataaaagcaacatag 53086126  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 33370023 - 33369908
Alignment:
Q  1 gatggtgacaaaataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaacaaacatccttttcc 100  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||| | | ||||||| ||| ||| ||    
T  33370023 gatggttacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaacattaactttcccatggtgggaaacaaatatcatttccc 33369924  T
Q  101 atgctaaatcccacct 116  Q
    ||||||||||||||||    
T  33369923 atgctaaatcccacct 33369908  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 33370820 - 33370925
Alignment:
Q  12 aataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaacaaacatccttttccatgctaaatcc 111  Q
    |||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||| | | ||||||  ||||||| |||||||||| ||    
T  33370820 aataatctagtgttgagggtgtataattctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatcctttcccatgctaaaccc 33370919  T
Q  112 cacctt 117  Q
    ||||||    
T  33370920 cacctt 33370925  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 32315736 - 32315796
Alignment:
Q  393 atttgccttattttactattaattataatgttgaattcaacaatttattaattatcttgtt 453  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  32315736 atttgccttatttttctattaattataatgttgaattcgacaatttgttaattatcttgtt 32315796  T

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Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 252 - 450
Target Start/End: Original strand, 12095099 - 12095297
Alignment:
Q  252 ttgttttatagattaaattcattgctaattgtgctttcatcaaagttcttgtaggcaactaattataatggataacaattatttatacttggatttcttt 351  Q
    ||||||||| |||||| ||||||  |||||||| ||||||||||||| |||||||||   ||||||||||||||||| |||||||| ||| |||||||||    
T  12095099 ttgttttattgattaacttcattaataattgtgttttcatcaaagttattgtaggcagtaaattataatggataacagttatttattctttgatttcttt 12095198  T
Q  352 ttggatttcttttatgttgcatatttgttttataatgactgatttgccttattttactattaattataatgttgaattcaacaatttattaattatctt 450  Q
    |||| ||| |||||||||||| |||||||||||| ||   ||||||||||||||| ||||||||||||||||||||||| | ||||| |||| ||||||    
T  12095199 ttgggtttattttatgttgcagatttgttttatattggtggatttgccttatttttctattaattataatgttgaattcgagaatttgttaactatctt 12095297  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 32943631 - 32943516
Alignment:
Q  1 gatggtgacaaaataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaacaaacatccttttcc 100  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||| | | ||||||| ||||||| ||    
T  32943631 gatggttacaaaataatctagtgttgagggtgtatagttctctacctgatctaatggctaacattaactttcccatggtgggaaacaaatatcctttccc 32943532  T
Q  101 atgctaaatcccacct 116  Q
    ||||||||||||||||    
T  32943531 atgctaaatcccacct 32943516  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 32944429 - 32944532
Alignment:
Q  12 aataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaacaaacatccttttccatgctaaatcc 111  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| | ||| | | ||||||  ||| ||| |||||||||| ||    
T  32944429 aataatctagtgttgagggtgtatagttctctacttaatctaatggctaacattaacttttccatggtgggaaacaagtatcatttcccatgctaaaccc 32944528  T
Q  112 cacc 115  Q
    ||||    
T  32944529 cacc 32944532  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 471
Target Start/End: Complemental strand, 22393631 - 22393560
Alignment:
Q  400 ttattttactattaattataatgttgaattcaacaatttattaattatcttgttgttactataaatttattt 471  Q
    |||||||  |||||| ||| ||||||| ||| |||| ||||||||||||||||| |||| | ||||||||||    
T  22393631 ttattttgttattaagtatgatgttgagttcgacaacttattaattatcttgtttttacgacaaatttattt 22393560  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 32547817 - 32547710
Alignment:
Q  1 gatggtgacaaaataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaacaaacatccttttcc 100  Q
    |||| |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| | ||||||||  ||||||| ||    
T  32547817 gatgatgacaaaataatctagtgttgagggtctatagttctctatttgatctaatggctaacattaactttcctatggtggaaaacaagaatcctttccc 32547718  T
Q  101 atgctaaa 108  Q
    ||||||||    
T  32547717 atgctaaa 32547710  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 32548611 - 32548721
Alignment:
Q  5 gtgacaaaataatctagtgttgagggtatatagttctctacttgatctaatagctaacattaactttcctatgatagaaaacaaacatccttttccatgc 104  Q
    ||||||||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | | ||||||  ||| ||| |||| |    
T  32548611 gtgacaaaataatataatgttgagggtgtatagttctctacttgatctaatggctaacattaactttcccatggtgggaaacaagtatcatttcccatac 32548710  T
Q  105 taaatcccacc 115  Q
    |||| ||||||    
T  32548711 taaaccccacc 32548721  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 3697370 - 3697314
Alignment:
Q  393 atttgccttattttactattaattataatgttgaattcaacaatttattaattatct 449  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||  |||||||||    
T  3697370 atttgccttattttgctattagttatgatgttgaattcaacaatttgataattatct 3697314  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 470
Target Start/End: Original strand, 35457342 - 35457422
Alignment:
Q  392 gatttgccttattttactattaattata--atgttgaattcaacaatttattaattatcttgttgttactataaatttatt 470  Q
    ||||| |||| |||| ||||||||||||  ||||||| ||||||||||| |||||||| ||||| |||| | |||||||||    
T  35457342 gattttcctttttttgctattaattatatgatgttgagttcaacaatttgttaattatattgtttttaccacaaatttatt 35457422  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 471
Target Start/End: Original strand, 18480089 - 18480186
Alignment:
Q  374 atttgttttataatgactgatttgccttattttactattaattataatgttgaattcaacaatttattaattatcttgttgttactataaatttattt 471  Q
    ||||||||||| | ||| ||||| |||||| || ||||||| ||| ||||||| |||||||||||||||||||||||||| |||| | ||||||||||    
T  18480089 atttgttttatgacgacagattttccttatattgctattaaatatgatgttgagttcaacaatttattaattatcttgtttttaccacaaatttattt 18480186  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 471
Target Start/End: Original strand, 32504903 - 32504973
Alignment:
Q  401 tattttactattaattataatgttgaattcaacaatttattaattatcttgttgttactataaatttattt 471  Q
    |||||| ||||||| ||| ||||||| ||  |||||||||||||||||||||| |||| | ||||||||||    
T  32504903 tattttgctattaaatatgatgttgagtttgacaatttattaattatcttgtttttacaacaaatttattt 32504973  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 453
Target Start/End: Original strand, 40873545 - 40873603
Alignment:
Q  395 ttgccttattttactattaattataatgttgaattcaacaatttattaattatcttgtt 453  Q
    |||||||||||| |||||| |||| ||||||||||| |||||||  |||||||||||||    
T  40873545 ttgccttattttgctattagttatgatgttgaattcgacaatttgataattatcttgtt 40873603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 471
Target Start/End: Complemental strand, 44207570 - 44207491
Alignment:
Q  392 gatttgccttattttactattaattataatgttgaattcaacaatttattaattatcttgttgttactataaatttattt 471  Q
    ||||| ||||||||| ||||||| ||| | ||| | ||| |||||||||||||||||||||| |||| |  |||||||||    
T  44207570 gattttccttattttgctattaagtatgacgtttagttcgacaatttattaattatcttgtttttaccacgaatttattt 44207491  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 488
Target Start/End: Original strand, 9645584 - 9645717
Alignment:
Q  355 gatttcttttatgttgcatatttgttttataatgactgatttgccttattttactattaattataatgttgaattcaacaatttattaattatcttgttg 454  Q
    ||||| |||| ||||||| |||||||||||  || | ||||| |||| |||| ||||||| |||||| || | ||| ||||||| ||||||||||||||     
T  9645584 gatttattttttgttgcaaatttgttttatgttggcggattttccttcttttgctattaagtataattttaagttcgacaatttgttaattatcttgttt 9645683  T
Q  455 ttactataaatttattttccggctattctcttat 488  Q
    |||| | ||||||||||  || ||||||| ||||    
T  9645684 ttaccacaaatttatttgtcgcctattcttttat 9645717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 488
Target Start/End: Original strand, 9651601 - 9651734
Alignment:
Q  355 gatttcttttatgttgcatatttgttttataatgactgatttgccttattttactattaattataatgttgaattcaacaatttattaattatcttgttg 454  Q
    ||||| |||| ||||||| |||||||||||  || | ||||| |||| |||| ||||||| |||||| || | ||| ||||||| ||||||||||||||     
T  9651601 gatttattttttgttgcaaatttgttttatgttggcggattttccttcttttgctattaagtataattttaagttcgacaatttgttaattatcttgttt 9651700  T
Q  455 ttactataaatttattttccggctattctcttat 488  Q
    |||| | ||||||||||  || ||||||| ||||    
T  9651701 ttaccacaaatttatttgtcgcctattcttttat 9651734  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 4608915 - 4608846
Alignment:
Q  120 tttgatccaatacttgcctatatttttc-tcatccataaccgacaaatcacaatgcatctctccatgtat 188  Q
    |||||| |||||||||||| |||||||| |||||| ||||  | ||||||||||| ||||||||||||||    
T  4608915 tttgatacaatacttgcctctatttttcctcatccgtaactcataaatcacaatgtatctctccatgtat 4608846  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 453
Target Start/End: Complemental strand, 4608694 - 4608593
Alignment:
Q  352 ttggatttcttttatgttgcatatttgttttataatgactgatttgccttattttactattaattataatgttgaattcaacaatttattaattatcttg 451  Q
    |||||||| |||||||||| | |||| |||||   ||  |||||| ||||||| |  |||||||||| ||||||||||||  | ||| ||||||||||||    
T  4608694 ttggatttattttatgttgtagatttattttaatttggttgatttaccttattatgttattaattatgatgttgaattcaggattttgttaattatcttg 4608595  T
Q  452 tt 453  Q
    ||    
T  4608594 tt 4608593  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 15368729 - 15368669
Alignment:
Q  393 atttgccttattttactattaattataatgttgaattcaacaatttattaattatcttgtt 453  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||  |||||||||||||    
T  15368729 atttgccttattttgctattagttatgatgttgaattcaacaatttgataattatcttgtt 15368669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 471
Target Start/End: Complemental strand, 42378059 - 42377932
Alignment:
Q  344 atttctttttggatttcttttatgttgcatatttgttttataatgactgatttgccttattttactattaattataatgttgaattcaacaatttattaa 443  Q
    |||| |||| |||||| |||||||||||| |||||||||||  ||   |||||  |||||||| ||||||| ||| | ||| | ||||||||||| ||||    
T  42378059 atttattttgggatttgttttatgttgcaaatttgttttatgttggtggatttttcttattttgctattaagtatgacgtttagttcaacaatttgttaa 42377960  T
Q  444 ttatcttgttgttactataaatttattt 471  Q
    |||||||||| |||  | ||||||||||    
T  42377959 ttatcttgtttttatcacaaatttattt 42377932  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 43088842 - 43088782
Alignment:
Q  393 atttgccttattttactattaattataatgttgaattcaacaatttattaattatcttgtt 453  Q
    |||||||||| ||| |||||| |||| ||||||||||| |||||||  |||||||||||||    
T  43088842 atttgccttaatttgctattagttatgatgttgaattcgacaatttgataattatcttgtt 43088782  T

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