View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_15 (Length: 529)
Name: NF2652_low_15
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 31382028 - 31381645
Alignment:
| Q |
19 |
atcattcactcatctaattaattaatgatatgctacagggactgctgagagtaacaagagaaaaagagattgaagtacttgtgactgagattgatggctt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31382028 |
atcattcactcatctaattaattaatgatatgctacagggactgctgagagtaacaagagaaaaagagattgaagtacttgtgactgagattgatggctt |
31381929 |
T |
|
| Q |
119 |
aaaattcaaagtaatagatggggttgatgtagcacatgatggtactatttatttcacggaagcttcatccaaatactcatacaaggattctgtcctagat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31381928 |
aaaattcaaagtaatagatggggttgatgtagcacatgatggtactatttatttcacggaagcttcatccaaatactcatacaaggattctgtcctagat |
31381829 |
T |
|
| Q |
219 |
atattagaaggaaaccctaatggtaggttttttagttataatccagcaacaaaaaagacaaccctactacttagagacctctacattgctaatggagttg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
31381828 |
atattagaaggaaaccctaatggtaggttttttagttataatccagcaacaaaaaagacaaccctactagtcagagacctctacattgctaatggagttg |
31381729 |
T |
|
| Q |
319 |
cagtctcaccagatcaaaattttgtggtcttttgtgaaacttcgatgtaagttgttcatcaccttcttagtattagtacaagta |
402 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
31381728 |
cagtctcaccagatcagaattttgtggtcttttgtgaaacttccatgtaagttgttcatgaccttcttagtattagtacaagta |
31381645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 33 - 381
Target Start/End: Complemental strand, 31404025 - 31403677
Alignment:
| Q |
33 |
taattaattaatgatatgctacagggactgctgagagtaacaagagaaaaagagattgaagtacttgtgactgagattgatggcttaaaattcaaagtaa |
132 |
Q |
| |
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||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31404025 |
taattaattaatggtatgattcagggattgctgagagtaacaagagaaaaagagattgaagtacttgtgactgagattgatggcttaaaattcaaattaa |
31403926 |
T |
|
| Q |
133 |
tagatggggttgatgtagcacatgatggtactatttatttcacggaagcttcatccaaatactcatacaaggattctgtcctagatatattagaaggaaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31403925 |
cagatggggttgatgtagcacatgatggtactatttatttcaccgacgcttcatcaaaatactcaatcaaggattctgtcctagatatattagaaggaaa |
31403826 |
T |
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| Q |
233 |
ccctaatggtaggttttttagttataatccagcaacaaaaaagacaaccctactacttagagacctctacattgctaatggagttgcagtctcaccagat |
332 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||||||||| || |||||||||||||||||||||| ||| |
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| T |
31403825 |
acctaatggtaggtttttgagttataatccagcaacaaaaaagacaacactactagttagtgacctctactttcctaatggagttgcagtctcacctgat |
31403726 |
T |
|
| Q |
333 |
caaaattttgtggtcttttgtgaaacttcgatgtaagttgttcatcacc |
381 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||| || |||||| |
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|
| T |
31403725 |
caaaattttgtggtcttttgtgaaacctccatgtaagttatttatcacc |
31403677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 31369817 - 31369477
Alignment:
| Q |
19 |
atcattcactcatctaattaattaatgatatgctacagggactgctgagagtaacaagagaaaaagagattgaagtacttgtgactgagattgatggctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
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| T |
31369817 |
atcattcactcatctaattaattaataatatgatacagggactgctgagagtaacaagagaaaaggagattgaagttcttgtgactgagattgacggctt |
31369718 |
T |
|
| Q |
119 |
aaaattcaaagtaatagatggggttgatgtagcacatgatggtactatttatttcacggaagcttcatccaaatactcatacaaggattctgtcctagat |
218 |
Q |
| |
|
| |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||| || ||||||| | |||||||| |
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|
| T |
31369717 |
acaattcaaattaacagatggggttgatgtcgcacatgatggtactatttatttcaccgacgcttcatcaaaatactcgtataaggattatctcctagat |
31369618 |
T |
|
| Q |
219 |
atattagaaggaaaccctaatggtaggttttttagttataatccagcaacaaaaaagacaaccctactacttagagacctctacattgctaatggagttg |
318 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | || ||||||||| || |||||||||||| |
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|
| T |
31369617 |
gtattcgaaggcaaccctaatggtaggtttttgagttataatccagcaacaaaaaagacaacactactagtcagtgacctctactttcctaatggagttg |
31369518 |
T |
|
| Q |
319 |
cagtctcaccagatcaaaattttgtggtcttttgtgaaact |
359 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||||||| |
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| T |
31369517 |
cagtctcacctgatcaaaaatttgtggtcttttgtgaaact |
31369477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 31420319 - 31420235
Alignment:
| Q |
110 |
tgatggcttaaaattcaaagtaatagatggggttgatgtagcacatgatggtactatttatttcacggaagcttcatccaaatac |
194 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||||||||||| | |||||||| ||||||||||| ||||| ||| ||||||| |
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|
| T |
31420319 |
tgatggattaaaattcaagttaacagatggggttgatgtaggtgaagatggtacaatttatttcacagaagcaacatacaaatac |
31420235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 31381580 - 31381552
Alignment:
| Q |
466 |
ccttgttacttgcatacttctacgactca |
494 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
31381580 |
ccttgttacttgcatacttctacgactca |
31381552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 33 - 381
Target Start/End: Complemental strand, 33621004 - 33620657
Alignment:
| Q |
33 |
taattaattaatgatatgctacagggactgctgagagtaacaagagaaaaagagattgaagtacttgtgactgagattgatggcttaaaattcaaagtaa |
132 |
Q |
| |
|
||||||||||||| |||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33621004 |
taattaattaatggtatgattcagggattgctgagagtaacaagagaaaaagagattgaagtacttgtgactgagattgatggcttaaaattcaaattaa |
33620905 |
T |
|
| Q |
133 |
tagatggggttgatgtagcacatgatggtactatttatttcacggaagcttcatccaaatactcatacaaggattctgtcctagatatattagaaggaaa |
232 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
33620904 |
cagatggg-ttgatgttgcacatgatggtactatttatttcaccgacgcttcatcaaaatactcaatcaaggattctgtcctagatatattagaaggaaa |
33620806 |
T |
|
| Q |
233 |
ccctaatggtaggttttttagttataatccagcaacaaaaaagacaaccctactacttagagacctctacattgctaatggagttgcagtctcaccagat |
332 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | || ||||||||| || |||||||||||||||||||||| ||| |
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| T |
33620805 |
acctaatggtaggtttttgagttataatccagcaacaaaaaagacaaccctgctagtcagtgacctctactttcctaatggagttgcagtctcacctgat |
33620706 |
T |
|
| Q |
333 |
caaaattttgtggtcttttgtgaaacttcgatgtaagttgttcatcacc |
381 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||| || |||||| |
|
|
| T |
33620705 |
caaaattttgtggtcttttgtgaaacctccatgtaagttatttatcacc |
33620657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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