View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_18 (Length: 500)
Name: NF2652_low_18
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_18 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 16 - 490
Target Start/End: Complemental strand, 26191152 - 26190671
Alignment:
| Q |
16 |
aattgaccaggataatggaatacatgttgtagaaactagaaagcttttaatgcaatcattagggatttagatcttccaaatgtgaagtgtgggtgcactt |
115 |
Q |
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| T |
26191152 |
aattgaccaggataatggaatacatgttgtagaaactagaaagcttttaatgcaatcattagggatttagatcttccaaatgtgaagtgtgggtgcactt |
26191053 |
T |
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| Q |
116 |
tatatcagtctcgagttgcaagatcggcggagtggtttcttata-------actatataggtacttgtaagattaaaaatattaaccaatgatttttggt |
208 |
Q |
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| T |
26191052 |
tatatcagtctcgagttgtaagatcggcggagtggtttcttatatcaattaactatataggtacttgtaagattaaaaatattaaccattgatttttggt |
26190953 |
T |
|
| Q |
209 |
gaagacattaatgaaaatgctattgttctgtttctttcagtcgatcagttctttaagattatttcttacaatgttgtcataaaacaaaaatttgtgaaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26190952 |
gaagacattaatgaaaatgctattgttctgtttctttcagtcgatcagttctttaagattatttcttacaatgttgtcgtaaaacaaaaatttgtgaaat |
26190853 |
T |
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| Q |
309 |
taatagatatatgtcactgacctatgcgttgctagtgaaataaaatctgtccatatcatttgacagaaaagttgatggatgatgaagttgaaaaggtaaa |
408 |
Q |
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| T |
26190852 |
taatagatatatgtcactgacctatgcgttgctagtgaaataaaatctgtccatatcatttgacagaaaagttgatggatgatgaagttgaaaaggtaaa |
26190753 |
T |
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| Q |
409 |
aggctttctagtcgatacaattgcaccgttccgagaacggttgaaaatactaggccttgttggcaatatagaagaccttcat |
490 |
Q |
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| T |
26190752 |
aggctttctggtcgatacaattgcaccgttacgagaacggttgaaaatactagtccgcgttggcaatatagaagaccttcat |
26190671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 8e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 222 - 490
Target Start/End: Original strand, 16298793 - 16299059
Alignment:
| Q |
222 |
aaaatgctattgttctgtttctttcagtcgatcagttctttaagattatttcttacaatgttgtcataaaacaaaaatttgtgaaattaatagatatatg |
321 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
16298793 |
aaaatgctattgttctgtttctttcagtcaataagttctttaagattatttcttacaatgttgtcattaaacaaaaatttgtgaaattaatagatacatg |
16298892 |
T |
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| Q |
322 |
tcactgacctatgcgttgctagtgaaataaaatctgtccatatcatttgacagaaaagttgatggatgatgaagttgaaaaggtaaaaggctttctagtc |
421 |
Q |
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| T |
16298893 |
tcaccgacttatgtgttgctaatgaaataaaatatgtccatgtcgttcgacag--aagttgatggatgatgaagttgaaaaggtaaagggctttccggtt |
16298990 |
T |
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| Q |
422 |
gatacaattgcaccgttccgagaacggttgaaaatactaggccttgttggcaatatagaagaccttcat |
490 |
Q |
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| T |
16298991 |
gatacaattgctccgtttcgagaacgattgaaaatactaggccgtgttggcaatatagaagaccttcat |
16299059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 93737 - 93805
Alignment:
| Q |
72 |
cattagggatttagatcttccaaatgtgaagtgtgggtgcactttatatcagtctcgagttgcaagatc |
140 |
Q |
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| T |
93737 |
catttgggatttagatctttcaaatgtgaagtgtaggtgcactttatttcagtcttgagtagtaagatc |
93805 |
T |
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