View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2652_low_2 (Length: 890)
Name: NF2652_low_2
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 646
Target Start/End: Complemental strand, 49298488 - 49297857
Alignment:
| Q |
9 |
gagatgaagtgaatgtgagctatggtatagtgatggagatatagatgtgatcatatctttctgtttagaaacttttttgttaccgatatcattgtatatg |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
49298488 |
gagatgaagtgaatatgagctatggtatagtgatggagatatagatgttatcatatctttctgtttagaaacttttttgttatcga-atcattgtatatg |
49298390 |
T |
|
| Q |
109 |
tnnnnnnnnnnnnntgtcgtcaatatttgaacgagtgtaaactctaatgactattttgaccctgtgaataatgttattgaaatgactctcttaaccgcgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
49298389 |
gaggggggcacc---gtcgtcaatatttgaacgagtgtaaactctaatgactattttgaccctgtgaat---gtaattgaaatgactctcttaaccgcgt |
49298296 |
T |
|
| Q |
209 |
gaggatcatgatcaaaaacgaaaaaggtattaacttgatttcccgcccaaaccagggaagttttgcacggaataaggaagaaattcaatggcttggtata |
308 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49298295 |
gaggatcatgatcgaaaacgaaaaaggtattaacttgatttcccgcccaaaacagggaagttttgcacggaataaggaagaaattcaatgtcttggtata |
49298196 |
T |
|
| Q |
309 |
tctctataaacggcaacggcaatccatgtgattannnnnnnn-cttaattattacttttaagttttagcttctttaataaaacaaactcatatcttttgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49298195 |
tctctataaacggcaacggcaatccatgtgattatttttttttcttaattattacttttaagttttagcttctttaataaaacacactcatatcttttgt |
49298096 |
T |
|
| Q |
408 |
ttccagatttgttaatgaagaaaggccggaacactaggtgtcatctagaaggaacatttggcaccgtatgtgggaagagaaagaatcttcccactaattt |
507 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
49298095 |
ttcctgatttgttaatgaagaaaggccggaacactaggtgtcatctagaaggaacatttggcaccgtatgtgggaagagaaagaatcttctcactgattt |
49297996 |
T |
|
| Q |
508 |
ctcatcatttgagaacatatgatacgatccacatctagtggcaaacgtggggaaaggatggcgatgattcaaatggcaagcaataagtttcctcgacaag |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49297995 |
ctcatcatttgagaacatatgatacgatccacatccagtggcaaacgtgaagaaaggatggcgatgattcaaatggcaagcaataagtttcctcgacaag |
49297896 |
T |
|
| Q |
608 |
tgcaaatacgtagaaacttcgttgagacacgctttcaac |
646 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49297895 |
tgcaaatacgtagaaacttcggtgagacacgctttcaac |
49297857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 643 - 873
Target Start/End: Complemental strand, 49297479 - 49297253
Alignment:
| Q |
643 |
caacctcattttgttagataatctacaagttctggaggaagtaagagatgcggctaacatcaagaagtatgccacaaagcttaaagcttccaaaaaa-ta |
741 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49297479 |
caacctcattttgttagataatctacaagttctggaggaagtaagagatgcggctaacatcaagaagtatgccacaaagcttaaagcttccaaaaaaata |
49297380 |
T |
|
| Q |
742 |
caactcaaagttaatgctgagaaggatgcaaaataatgatatggttttgaaaaggataactagaccatcacaaactagcaagttatacttgaaaattaaa |
841 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49297379 |
caactcaaagttaatgctgagaaggatgcaaaataatgatatggttttgaaaaggataactagaccatcacaaactagcaagttatacttga-----aaa |
49297285 |
T |
|
| Q |
842 |
ggaaaggcccgtatagctcatatcaggagcct |
873 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49297284 |
ggaaaggcccgtatagctcatatcaggagcct |
49297253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University