View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2652_low_22 (Length: 446)

Name: NF2652_low_22
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2652_low_22
NF2652_low_22
[»] chr8 (10 HSPs)
chr8 (1-194)||(3423913-3424113)
chr8 (223-434)||(3423669-3423881)
chr8 (236-381)||(34653276-34653420)
chr8 (267-357)||(13636244-13636334)
chr8 (267-357)||(13736657-13736747)
chr8 (242-348)||(24334458-24334564)
chr8 (223-317)||(22488845-22488939)
chr8 (245-358)||(41086819-41086932)
chr8 (276-347)||(3670555-3670626)
chr8 (258-347)||(44167176-44167265)
[»] chr2 (12 HSPs)
chr2 (223-359)||(16209793-16209929)
chr2 (256-358)||(4818743-4818843)
chr2 (264-369)||(29140163-29140269)
chr2 (277-359)||(38373365-38373447)
chr2 (287-348)||(19028478-19028539)
chr2 (258-359)||(30554532-30554638)
chr2 (245-335)||(14818824-14818914)
chr2 (270-343)||(4604675-4604747)
chr2 (223-319)||(8793850-8793946)
chr2 (302-365)||(18967757-18967820)
chr2 (242-358)||(34466981-34467096)
chr2 (287-359)||(35005222-35005294)
[»] chr7 (9 HSPs)
chr7 (234-359)||(45411265-45411390)
chr7 (247-347)||(46288819-46288919)
chr7 (261-351)||(40024192-40024282)
chr7 (303-364)||(21946151-21946212)
chr7 (228-348)||(2256404-2256523)
chr7 (223-357)||(23070195-23070329)
chr7 (245-316)||(23705039-23705110)
chr7 (280-351)||(31245262-31245333)
chr7 (281-346)||(12139824-12139887)
[»] chr1 (10 HSPs)
chr1 (243-376)||(30264067-30264205)
chr1 (243-351)||(30350735-30350843)
chr1 (223-342)||(9552818-9552937)
chr1 (233-357)||(46536653-46536777)
chr1 (286-357)||(26768708-26768778)
chr1 (259-356)||(12188639-12188736)
chr1 (264-319)||(50014189-50014244)
chr1 (281-359)||(8772434-8772512)
chr1 (286-318)||(52426245-52426277)
chr1 (297-358)||(16632750-16632811)
[»] chr5 (9 HSPs)
chr5 (228-369)||(30251934-30252075)
chr5 (234-350)||(1637963-1638079)
chr5 (259-351)||(26402019-26402111)
chr5 (281-357)||(10418601-10418677)
chr5 (223-275)||(20429799-20429851)
chr5 (296-359)||(25731219-25731282)
chr5 (243-359)||(12487100-12487217)
chr5 (223-311)||(34596489-34596578)
chr5 (258-359)||(42641116-42641217)
[»] chr3 (11 HSPs)
chr3 (224-357)||(35744679-35744814)
chr3 (263-384)||(20137590-20137709)
chr3 (230-328)||(40394905-40395003)
chr3 (259-357)||(47510750-47510848)
chr3 (258-346)||(29398268-29398356)
chr3 (263-384)||(23278016-23278135)
chr3 (290-362)||(41632026-41632098)
chr3 (243-318)||(11529304-11529379)
chr3 (277-319)||(42426246-42426288)
chr3 (223-359)||(4195306-4195442)
chr3 (273-357)||(44765299-44765383)
[»] chr4 (11 HSPs)
chr4 (223-359)||(16502389-16502524)
chr4 (259-359)||(14124203-14124303)
chr4 (267-351)||(51088916-51089000)
chr4 (259-319)||(2392597-2392657)
chr4 (223-275)||(5324605-5324657)
chr4 (264-384)||(34341398-34341518)
chr4 (287-318)||(32906156-32906187)
chr4 (228-362)||(41259984-41260118)
chr4 (245-321)||(53650078-53650155)
chr4 (245-357)||(33027147-33027258)
chr4 (290-326)||(42009690-42009726)
[»] chr6 (3 HSPs)
chr6 (231-350)||(2223669-2223788)
chr6 (259-369)||(23131454-23131564)
chr6 (277-359)||(29694306-29694388)
[»] scaffold0007 (1 HSPs)
scaffold0007 (281-358)||(246547-246624)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 3424113 - 3423913
Alignment:
Q  1 gctattccaaactagtgctcaaagttagaac-------atacgtactttatttccacaaaatattgtcctcctaacagttatatagcactatacattgtc 93  Q
    |||||||||||||||||||||||||||||||       |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3424113 gctattccaaactagtgctcaaagttagaacttagaacatacgtccttcatttccacaaaatattgtcctcctaacagttatatagcactatacattgtc 3424014  T
Q  94 tagataagcaatcatgtggctaacaatagcaagacatagaacttgttgattgggagaaaacaagcattatttgtgaaattatgggtcttaattataccgc 193  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3424013 tagttaagcaatcatgtggctaacaatagcaagacatagaacttgttgaatgggagaaaacaagcattatttgtgaaattgtgggtcttaattataccgc 3423914  T
Q  194 a 194  Q
    |    
T  3423913 a 3423913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 223 - 434
Target Start/End: Complemental strand, 3423881 - 3423669
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 322  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  3423881 ctaatcagtgccttaagggtaatggttaagaaattcattagtagaaattatgttttagaaatgcaagtttttatttttgtcttagcaataattacacaag 3423782  T
Q  323 ttttagttacaaagttacttattttagtattttaaccgatacctcaacgacactagttagca-nnnnnnnnnnngaacaaaatttgagatattatcccga 421  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  3423781 ttttagttacaaaattacttattttagtactttaaccgatacctcaacgacactagttagcatttttttttttggaacaaaatttgagatattatcccga 3423682  T
Q  422 tttacttgatatt 434  Q
    ||||| |||||||    
T  3423681 tttacgtgatatt 3423669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 34653276 - 34653420
Alignment:
Q  236 taagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 335  Q
    |||||| |||||||||  ||| |||||||||||||||||| ||| ||| ||||||||||| ||||||||| ||||||||||||||| |||| ||   ||     
T  34653276 taagggcaatggttaaggaatctattagtagaaattatgtcttgaaaacgcaagtttttacttttgtctt-gcaataattacacaactttttgtagtaat 34653374  T
Q  336 gttacttattttagtattttaaccgatacctcaacgacactagtta 381  Q
    |||||||||||||||| ||||| | || |||||| | |||||||||    
T  34653375 gttacttattttagtactttaatcaatgcctcaagggcactagtta 34653420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 13636334 - 13636244
Alignment:
Q  267 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 357  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13636334 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13636244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 13736747 - 13736657
Alignment:
Q  267 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 357  Q
    ||||| ||| ||||||||||| ||||||| |||||||||| |||||| ||||||| |||| ||||||||||||||||||||| || |||||    
T  13736747 aaattttgtcttggaaatgcatgtttttacttttgtcttaacaataactacacaactttttgttacaaagttacttattttaatactttaa 13736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 348
Target Start/End: Complemental strand, 24334564 - 24334458
Alignment:
Q  242 taatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttact 341  Q
    ||||||||||  |||| ||||||||||||| ||||||  |||| |||||||||| |||| |||| | ||||||||||||| ||||  || |||| || ||    
T  24334564 taatggttaaggaattcattagtagaaattttgttttaaaaatacaagtttttacttttctcttggtaataattacacaactttttattgcaaaattgct 24334465  T
Q  342 tatttta 348  Q
    |||||||    
T  24334464 tatttta 24334458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 22488939 - 22488845
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattac 317  Q
    |||| ||||||| ||||||||||||||||  | |  |||| |||||| | |||||||||||| |||||||| | |||| ||||||||||| ||||    
T  22488939 ctaaccagtgccctaagggtaatggttaaggattccattaatagaaactttgttttggaaatacaagttttcacttttttcttagcaatagttac 22488845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 41086819 - 41086932
Alignment:
Q  245 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttactta 343  Q
    |||||||| ||| |||| ||||||| | ||| |||||||| ||| |||||| |||| |||| | ||||||||||||| |||||| ||| ||| |||||||    
T  41086819 tggttaaagaatctatttgtagaaactttgtcttggaaatacaaatttttacttttatcttggtaataattacacaacatttta-ttaaaaaattactta 41086917  T
Q  344 ttttagtattttaac 358  Q
    |||| ||| ||||||    
T  41086918 ttttggtactttaac 41086932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 3670626 - 3670555
Alignment:
Q  276 tttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 347  Q
    ||||||||| |||||||||| |||||| ||| |||||||||||||| ||||   || ||| |||||||||||    
T  3670626 tttggaaatacaagtttttaattttgttttaacaataattacacaactttttaataaaaacttacttatttt 3670555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 347
Target Start/End: Original strand, 44167176 - 44167265
Alignment:
Q  258 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttt 347  Q
    ||||| |||||| | ||| |||||||| ||| | |||| |||| |||||||||| ||||||||| |||| | | |||| |||||||||||    
T  44167176 tattaatagaaactttgtcttggaaatacaaatctttacttttttcttagcaatgattacacaacttttcgatgcaaacttacttatttt 44167265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 223 - 359
Target Start/End: Original strand, 16209793 - 16209929
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 322  Q
    |||||||||| |||||||| ||||||||| ||||  | ||||||||| | |||||||||||| ||||| |||| |||||||||||||||| ||||||||     
T  16209793 ctaatcagtgtcttaagggcaatggttaagaaatccaatagtagaaactttgttttggaaatacaagtgtttacttttgtcttagcaatagttacacaac 16209892  T
Q  323 ttttagttacaaagttacttattttagtattttaacc 359  Q
    |||| |||  ||||||||||||||||||| |||||||    
T  16209893 tttttgttttaaagttacttattttagtactttaacc 16209929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 358
Target Start/End: Original strand, 4818743 - 4818843
Alignment:
Q  256 tttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttt 355  Q
    |||||||||||||||| || || |||||| |||||||||| |||| |||||  ||||||||||||| ||||| || |||||||||||||||||||| |||    
T  4818743 tttattagtagaaattttgctt-ggaaattcaagtttttacttttatcttaataataattacacaattttta-tttcaaagttacttattttagtacttt 4818840  T
Q  356 aac 358  Q
    |||    
T  4818841 aac 4818843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 29140269 - 29140163
Alignment:
Q  264 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaaccgat 362  Q
    |||||||| |||  || |||| |||||||||||||||  |||||||||||||||||||  |||| ||| |||| ||||||||||||||| ||||||| ||    
T  29140269 tagaaattttgtcctgaaaatacaagtttttattttttccttagcaataattacacaatttttttgtttcaaaattacttattttagtactttaaccaat 29140170  T
Q  363 acctcaa 369  Q
    | |||||    
T  29140169 atctcaa 29140163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 38373365 - 38373447
Alignment:
Q  277 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 359  Q
    |||||||| |||||||||| |||| |||||||||||||||||| | |||| | | |||| |||||||||||| ||||||||||    
T  38373365 ttggaaatacaagtttttacttttatcttagcaataattacaccatttttcgatgcaaatttacttattttaatattttaacc 38373447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 19028478 - 19028539
Alignment:
Q  287 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttatttta 348  Q
    ||||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||||||||||    
T  19028478 aagtttttacttttgtcttagtaataattacacaactttttgttgcaaagttacttatttta 19028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 30554638 - 30554532
Alignment:
Q  258 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac-----aaagttacttattttagtat 352  Q
    |||||||||||||||||| ||| |||||||  |||||| |||||||||| || ||||||||||| |||| ||| |     ||||| |||||||||| |||    
T  30554638 tattagtagaaattatgtcttgaaaatgcacatttttacttttgtcttaacattaattacacaattttttgttgcaaattaaagtaacttattttaatat 30554539  T
Q  353 tttaacc 359  Q
    |||||||    
T  30554538 tttaacc 30554532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 335
Target Start/End: Complemental strand, 14818914 - 14818824
Alignment:
Q  245 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaa 335  Q
    |||||||| ||| |||||| ||||| |  |||||| |||||||| |||||| |||||| ||||||||||||| |||| |||| | ||||||    
T  14818914 tggttaaagaatctattagaagaaacttggttttgaaaatgcaaatttttacttttgttttagcaataattatacaattttttgatacaaa 14818824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 4604747 - 4604675
Alignment:
Q  270 ttatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactta 343  Q
    |||||| ||||||||||||||||| |||| |||||||||| ||||||||||| |||| ||| |  |||||||||    
T  4604747 ttatgtcttggaaatgcaagtttt-atttctgtcttagcagtaattacacaactttttgttgcttagttactta 4604675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 8793946 - 8793850
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 319  Q
    |||| ||||||| |||||| | |||||||  ||| || || |||||| | ||| ||||||||  ||||||||||||||||||| |||||||| ||||    
T  8793946 ctaaccagtgccctaagggcattggttaaggaatctactaatagaaactttgtcttggaaatataagtttttatttttgtcttggcaataatcacac 8793850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 18967757 - 18967820
Alignment:
Q  302 tcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatacc 365  Q
    ||||| |||||||||||||| |||| ||| |||| |||| ||||||| |||||||||| |||||    
T  18967757 tcttaacaataattacacaacttttcgttgcaaacttacgtattttaatattttaaccaatacc 18967820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 358
Target Start/End: Original strand, 34466981 - 34467096
Alignment:
Q  242 taatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttact 341  Q
    |||| ||||| ||||| ||||||| ||| | ||||||| ||||| || |||||| |||  | |||||||||||||||||| |||   ||| ||| |||||    
T  34466981 taatagttaagaaattcattagtaaaaaatttgttttgaaaatgtaaatttttagttta-tgttagcaataattacacaactttatattataaatttact 34467079  T
Q  342 tattttagtattttaac 358  Q
    ||||||| || ||||||    
T  34467080 tattttaatactttaac 34467096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 359
Target Start/End: Complemental strand, 35005294 - 35005222
Alignment:
Q  287 aagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 359  Q
    |||| |||| |||| |||||||||| ||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  35005294 aagtctttacttttttcttagcaatgattacaccacttttcgatgcaaacttacttattttagtactttaacc 35005222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 234 - 359
Target Start/End: Complemental strand, 45411390 - 45411265
Alignment:
Q  234 cttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttaca 333  Q
    |||||| | |||||||||| |||| |||  ||||||||||||||| |||||||||||||||| |||| ||| | ||||||||||| || |||| |||| |    
T  45411390 cttaagagcaatggttaaagaattcatttatagaaattatgttttagaaatgcaagtttttacttttatctcaacaataattacataactttttgttata 45411291  T
Q  334 aagttacttattttagtattttaacc 359  Q
    |||||||||||||||||| |||||||    
T  45411290 aagttacttattttagtactttaacc 45411265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 46288819 - 46288919
Alignment:
Q  247 gttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 346  Q
    ||||||||||||||||||||||||| ||| ||  |||||||||||||| ||||||||||||||||||||||| || ||||  || |||| || |||||||    
T  46288819 gttaaaaaatttattagtagaaattttgtcttaaaaatgcaagtttttgtttttgtcttagcaataattacataattttttattgcaaaattgcttattt 46288918  T
Q  347 t 347  Q
    |    
T  46288919 t 46288919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 40024192 - 40024282
Alignment:
Q  261 tagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 351  Q
    ||||| ||||||||||||| ||||||||||||||| |||| | |||||||||||||||||| ||||  || ||||||||||||| ||||||    
T  40024192 tagtataaattatgttttgcaaatgcaagtttttacttttattttagcaataattacacaactttttattgcaaagttacttatgttagta 40024282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 21946212 - 21946151
Alignment:
Q  303 cttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgatac 364  Q
    ||||| ||||||||||||| ||||  || |||||||||||||||||||||||||||| ||||    
T  21946212 cttagtaataattacacaactttttattgcaaagttacttattttagtattttaaccaatac 21946151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 2256404 - 2256523
Alignment:
Q  228 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 327  Q
    ||||||||||||||||||| ||||  | |  |||| |||||| ||||| || ||||||||||| ||||||||| |||||| ||| ||||||| | ||||     
T  2256404 cagtgccttaagggtaatgattaaggattccattaatagaaactatgtcttagaaatgcaagtatttattttt-tcttaggaatgattacaccacttttc 2256502  T
Q  328 gttacaaagttacttatttta 348  Q
    | | |||| ||||||||||||    
T  2256503 gatgcaaacttacttatttta 2256523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 357
Target Start/End: Original strand, 23070195 - 23070329
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 322  Q
    |||| ||||||| |||||  ||||||||| || |  |||| |||||| | ||| |||||||| ||||| |||| |||| |||||||||| ||||||| |     
T  23070195 ctaaccagtgccctaaggacaatggttaagaattccattaatagaaactttgtcttggaaatacaagtctttacttttttcttagcaatgattacaccac 23070294  T
Q  323 ttttagttacaaagttacttattttagtattttaa 357  Q
    |||| | | |||| |||||||||||| || |||||    
T  23070295 ttttcgatgcaaatttacttattttaatactttaa 23070329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 23705110 - 23705039
Alignment:
Q  245 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataatta 316  Q
    |||||||| ||| ||||||| |||||| ||| ||||||||||| ||||||| ||||  |||| |||||||||    
T  23705110 tggttaaagaatctattagttgaaattttgtcttggaaatgcatgtttttactttttccttaacaataatta 23705039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 351
Target Start/End: Original strand, 31245262 - 31245333
Alignment:
Q  280 gaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 351  Q
    ||||| ||||| || | ||||||||||||||||||||||| | |||| | | |||| |||||||||||||||    
T  31245262 gaaatacaagtcttcacttttgtcttagcaataattacaccatttttcgatgcaaacttacttattttagta 31245333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 12139824 - 12139887
Alignment:
Q  281 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 346  Q
    |||| |||||||||||||  |||| |||||||||||||||| ||||  || |||||||||||||||    
T  12139824 aaatacaagtttttattt--gtctcagcaataattacacaactttttatttcaaagttacttattt 12139887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 376
Target Start/End: Original strand, 30264067 - 30264205
Alignment:
Q  243 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaa-----taattacacaaattttagttacaaagt 337  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||| |||     ||||||||||| |||| |||  |||||    
T  30264067 aatggttaagaaatttattagtagaaattttgttttgaaaatgtaagtttttacttttgtcttatcaataatttaattacacaattttttgttgtaaagt 30264166  T
Q  338 tacttattttagtattttaaccgatacctcaacgacact 376  Q
    ||||||||||| || ||||||  ||| ||||| ||||||    
T  30264167 tacttattttaataatttaacaaatatctcaatgacact 30264205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 243 - 351
Target Start/End: Complemental strand, 30350843 - 30350735
Alignment:
Q  243 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttactt 342  Q
    |||||||||  ||| ||||||||| |||||||| ||||||||||||| ||||  |||| |||||||||| ||||||||| | ||  || |||||||||||    
T  30350843 aatggttaaggaatctattagtaggaattatgtcttggaaatgcaagcttttgcttttatcttagcaatgattacacaattgtttattgcaaagttactt 30350744  T
Q  343 attttagta 351  Q
    |||||||||    
T  30350743 attttagta 30350735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 342
Target Start/End: Complemental strand, 9552937 - 9552818
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 322  Q
    |||| ||||| |||||||| |||| ||||| ||| ||||| || |||||   |||||||||||||||| |||| |||||||||| |||||||||||||      
T  9552937 ctaaccagtgtcttaagggcaatgattaaagaatctattaataaaaatttcattttggaaatgcaagtatttacttttgtcttatcaataattacacacc 9552838  T
Q  323 ttttagttacaaagttactt 342  Q
    |||| |||  ||||||||||    
T  9552837 tttttgttgtaaagttactt 9552818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 357
Target Start/End: Complemental strand, 46536777 - 46536653
Alignment:
Q  233 ccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttac 332  Q
    ||||||||  ||| ||||||||||| || |||| ||||| | ||||| |||| |||||||||| |||||||||| |||||| ||||||| |||   || |    
T  46536777 ccttaaggacaattgttaaaaaattcatcagtacaaattctattttgaaaatacaagtttttacttttgtcttatcaataactacacaactttgtattgc 46536678  T
Q  333 aaagttacttattttagtattttaa 357  Q
    ||| |||||||||||| || |||||    
T  46536677 aaaattacttattttaatactttaa 46536653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 26768778 - 26768708
Alignment:
Q  286 caagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 357  Q
    ||||||||||||||||||||| | ||||| ||||||||||| | |||||| ||||||||||||||| |||||    
T  26768778 caagtttttatttttgtcttatctataatcacacaaatttt-gatacaaatttacttattttagtaatttaa 26768708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 356
Target Start/End: Complemental strand, 12188736 - 12188639
Alignment:
Q  259 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtatttta 356  Q
    |||| |||||| | ||| |||||||| ||| |||||| |||| |||||||||||||||||| | ||||   |||||| ||||||||||||||| ||||    
T  12188736 attaatagaaactttgtcttggaaatacaaatttttacttttttcttagcaataattacaccatttttcaatacaaaattacttattttagtacttta 12188639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 50014189 - 50014244
Alignment:
Q  264 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 319  Q
    |||||| | |||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  50014189 tagaaactttgtttttgaaatacaaatttttatttttgtcttagcaataattacac 50014244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 8772434 - 8772512
Alignment:
Q  281 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 359  Q
    |||| ||||| |||| ||||||||| ||||||||||||| | |||| | | |||| ||||||||||||||| |||||||    
T  8772434 aaatacaagtctttacttttgtcttggcaataattacaccacttttcgatgcaaatttacttattttagtactttaacc 8772512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 52426277 - 52426245
Alignment:
Q  286 caagtttttatttttgtcttagcaataattaca 318  Q
    |||||||||||||||||||||||||||||||||    
T  52426277 caagtttttatttttgtcttagcaataattaca 52426245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 16632750 - 16632811
Alignment:
Q  297 ttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 358  Q
    ||||||||| | ||||||||||||| ||||  |||||||||| ||||||||| || ||||||    
T  16632750 ttttgtcttggtaataattacacaattttttattacaaagttgcttattttaatactttaac 16632811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 369
Target Start/End: Original strand, 30251934 - 30252075
Alignment:
Q  228 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 327  Q
    ||||||| |||||| |||||||||  | |  |||| |||||||| ||| |||||||| ||||| |||| |||| |||||||||||||||||| | ||||     
T  30251934 cagtgccctaagggcaatggttaaggattccattaatagaaattttgtcttggaaatacaagtctttacttttttcttagcaataattacaccacttttc 30252033  T
Q  328 gttacaaagttacttattttagtattttaaccgatacctcaa 369  Q
    | ||||||  || ||||||||||| ||||||| |||||||||    
T  30252034 gatacaaatatatttattttagtactttaaccaatacctcaa 30252075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 350
Target Start/End: Original strand, 1637963 - 1638079
Alignment:
Q  234 cttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttaca 333  Q
    |||||||| |||||||||  | | ||||| || ||||| ||| |||||||| ||| |||||| |||| |||||||||||||||||||| |||| | | ||    
T  1637963 cttaagggcaatggttaatgattctattaatataaattttgtcttggaaatacaaatttttacttttttcttagcaataattacacaactttttgatgca 1638062  T
Q  334 aagttacttattttagt 350  Q
    || ||| ||||||||||    
T  1638063 aacttatttattttagt 1638079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 26402019 - 26402111
Alignment:
Q  259 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 351  Q
    ||||||||||||| ||| ||||||||||||| ||| | |||||||||| |||| ||||||||| ||||  ||  ||| |||||||||||||||    
T  26402019 attagtagaaattttgtattggaaatgcaagctttcacttttgtcttaacaatgattacacaactttttattgaaaaattacttattttagta 26402111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 10418677 - 10418601
Alignment:
Q  281 aaatgcaagtttttatttttgtcttagcaataattacacaa-attttagttacaaagttacttattttagtattttaa 357  Q
    |||| ||||||||||||||||| ||| |||||||||||||| |||||| || ||||||||||||||||| || |||||    
T  10418677 aaatacaagtttttatttttgttttaacaataattacacaacattttattt-caaagttacttattttaatactttaa 10418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 20429851 - 20429799
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgt 275  Q
    |||| ||||| | ||| ||||||||||||| ||||||||||||||||||||||    
T  20429851 ctaaccagtgtcctaaaggtaatggttaaagaatttattagtagaaattatgt 20429799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 25731282 - 25731219
Alignment:
Q  296 tttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 359  Q
    ||||| |||||||||||||||||||| ||||   | |||| ||||||||||||||| |||||||    
T  25731282 tttttttcttagcaataattacacaacttttctatgcaaacttacttattttagtactttaacc 25731219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 359
Target Start/End: Original strand, 12487100 - 12487217
Alignment:
Q  243 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtct-tagcaataattacacaaattttagttacaaagttact 341  Q
    |||||||||  ||| |||||||||||||| ||| ||| |||| ||| |||||| ||||||||   | ||||||||||||| | || |||  |||||||||    
T  12487100 aatggttaaggaatctattagtagaaattttgtcttgaaaatacaaatttttacttttgtctcgggtaataattacacaactcttcgttgtaaagttact 12487199  T
Q  342 tattttagtattttaacc 359  Q
    | ||||| || |||||||    
T  12487200 tgttttaatactttaacc 12487217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 34596489 - 34596578
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagt-ttttatttttgtcttagcaat 311  Q
    |||| ||||||  ||| ||||||||||| ||| |||||||||| ||||| | | |||| ||| ||||| |||||||||| ||||||||||    
T  34596489 ctaaccagtgctctaaaggtaatggttataaattttattagtaaaaattttatcttgggaatacaagtattttatttttttcttagcaat 34596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 359
Target Start/End: Complemental strand, 42641217 - 42641116
Alignment:
Q  258 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 357  Q
    ||||| |||||| | ||| ||| |||| ||||| |||| |||| ||||| |||| ||||||| | |||| | | |||| ||||||||||||||| |||||    
T  42641217 tattaatagaaactttgtcttgaaaatacaagtctttacttttttcttatcaatgattacaccatttttcgatgcaaacttacttattttagtactttaa 42641118  T
Q  358 cc 359  Q
    ||    
T  42641117 cc 42641116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 357
Target Start/End: Original strand, 35744679 - 35744814
Alignment:
Q  224 taatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaat 323  Q
    ||||||||||  || | ||| ||||||| ||||  |||||||||||| |||| |||||| |||||||||||| |||||||||| ||||||||||||| ||    
T  35744679 taatcagtgcactatgagtattggttaagaaatccattagtagaaatcatgtattggaa-tgcaagtttttacttttgtcttaccaataattacacatat 35744777  T
Q  324 t---ttagttacaaagttacttattttagtattttaa 357  Q
    |   || |||||||| |||||||||||| || |||||    
T  35744778 ttaatttgttacaaaattacttattttaatactttaa 35744814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 263 - 384
Target Start/End: Original strand, 20137590 - 20137709
Alignment:
Q  263 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 362  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||||||||||||||| | ||||| ||    
T  20137590 gtagaaattttgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttacttattttagtactctaaccaat 20137687  T
Q  363 acctcaacgacactagttagca 384  Q
      | ||| | ||||||||||||    
T  20137688 gtcccaagggcactagttagca 20137709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 40395003 - 40394905
Alignment:
Q  230 gtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttag 328  Q
    ||||| ||||| ||||| ||||  |||||||||||||||||| | | ||  ||||| |||||||||||||| | |||| ||||||||||||| ||||||    
T  40395003 gtgccataaggataatgattaaggaatttattagtagaaattttatcttaaaaatgtaagtttttatttttattttagtaataattacacaacttttag 40394905  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 357
Target Start/End: Complemental strand, 47510848 - 47510750
Alignment:
Q  259 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 357  Q
    |||| |||||| ||||| |||||||| ||| | ||| ||||| ||||| |||||||||||| | |||| | |||||| ||||||||||||||| |||||    
T  47510848 attaatagaaactatgtcttggaaatacaaatctttgtttttttcttaacaataattacaccatttttcgatacaaacttacttattttagtactttaa 47510750  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 29398268 - 29398356
Alignment:
Q  258 tattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattt 346  Q
    |||||||||||||| | |||||||||||||| ||||||| | | |  |||||||| |||||||| |||| |||  ||||||||||||||    
T  29398268 tattagtagaaattttattttggaaatgcaaatttttatctctctaatagcaatagttacacaactttttgttgtaaagttacttattt 29398356  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 384
Target Start/End: Complemental strand, 23278135 - 23278016
Alignment:
Q  263 gtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 362  Q
    ||||||||| ||| ||||||||| || |||||| |||||||||  ||||||||||   |||||| ||| |||||||  ||||||||||| | ||||| ||    
T  23278135 gtagaaattctgtcttggaaatgaaattttttacttttgtcttgacaataattacc--aatttttgttgcaaagttgtttattttagtactctaaccaat 23278038  T
Q  363 acctcaacgacactagttagca 384  Q
      ||||| | ||||||||||||    
T  23278037 gtctcaagggcactagttagca 23278016  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 41632026 - 41632098
Alignment:
Q  290 tttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgat 362  Q
    |||||||||||||||||| ||||||||||| | ||||  || |||| || |||||||||| ||||||| ||||    
T  41632026 tttttatttttgtcttagtaataattacactattttttattgcaaacttgcttattttagaattttaatcgat 41632098  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 11529304 - 11529379
Alignment:
Q  243 aatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattaca 318  Q
    |||||||||| |||  |||||||||| || ||| ||||| ||||||||||||| |||| |||| | ||||||||||    
T  11529304 aatggttaaagaatccattagtagaagttttgtcttggagatgcaagtttttacttttatcttggtaataattaca 11529379  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 42426288 - 42426246
Alignment:
Q  277 ttggaaatgcaagtttttatttttgtcttagcaataattacac 319  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  42426288 ttggaaatataagtttttatttttgtcttaacaataattacac 42426246  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 359
Target Start/End: Original strand, 4195306 - 4195442
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagttttta-tttttgtcttagcaataattacacaa 321  Q
    |||| |||||||||||||| |||||||||  | |  |||| ||| |||| |||||||||||| ||| | |||| ||||  ||||||||| |||||||| |    
T  4195306 ctaaccagtgccttaagggcaatggttaaggattccattaatagtaattttgttttggaaatacaattctttacttttcttcttagcaa-aattacacca 4195404  T
Q  322 attttagttacaaagttacttattttagtattttaacc 359  Q
     ||||   | |||| ||||||||||||||| |||||||    
T  4195405 tttttttatgcaaacttacttattttagtactttaacc 4195442  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 357
Target Start/End: Original strand, 44765299 - 44765383
Alignment:
Q  273 tgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaa 357  Q
    |||||||||||| ||||| |||| || | |||||||||||||||||| | ||||   | |||| |||||||||||| || |||||    
T  44765299 tgttttggaaatacaagtctttacttatttcttagcaataattacaccacttttcaatgcaaacttacttattttaatactttaa 44765383  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 359
Target Start/End: Original strand, 16502389 - 16502524
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaa 322  Q
    |||| ||||||| |||||| |||||||||  |||  ||||||||||| | ||| |||||||| ||| |||||| |||| |||| |||||| ||||||||     
T  16502389 ctaaccagtgccctaagggcaatggttaaggaatccattagtagaaactttgtcttggaaatacaaattttta-ttttctcttggcaatatttacacaac 16502487  T
Q  323 ttttagttacaaagttacttattttagtattttaacc 359  Q
    |||| |||  | ||||||||||||||||| |||||||    
T  16502488 tttttgttttagagttacttattttagtactttaacc 16502524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 14124303 - 14124203
Alignment:
Q  259 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 358  Q
    |||| |||||| | ||||||||||||  ||||||||| |||| ||||||||| |||||||| | |||| | | |||| |||||||||||| || ||||||    
T  14124303 attaatagaaactttgttttggaaatataagtttttacttttttcttagcaaaaattacaccatttttcgatgcaaatttacttattttaatactttaac 14124204  T
Q  359 c 359  Q
    |    
T  14124203 c 14124203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 51089000 - 51088916
Alignment:
Q  267 aaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagta 351  Q
    ||||||| | ||| ||||| || |||||| |||| |||||  ||||||||||||| ||||  |||||||||||||||||||||||    
T  51089000 aaattatatgttgaaaatgtaaatttttacttttatcttacaaataattacacaattttttattacaaagttacttattttagta 51088916  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 2392597 - 2392657
Alignment:
Q  259 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacac 319  Q
    ||||||||||| | ||| ||| ||||||||||||||| ||||||||| ||||||| |||||    
T  2392597 attagtagaaactttgtcttgtaaatgcaagtttttacttttgtcttggcaataactacac 2392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 5324657 - 5324605
Alignment:
Q  223 ctaatcagtgccttaagggtaatggttaaaaaatttattagtagaaattatgt 275  Q
    |||| ||||| | ||| ||||||||||||| ||||||||||||||||||||||    
T  5324657 ctaaccagtgtcctaaaggtaatggttaaagaatttattagtagaaattatgt 5324605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 384
Target Start/End: Complemental strand, 34341518 - 34341398
Alignment:
Q  264 tagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaaccgata 363  Q
    |||||||| |||| |  |||| |||| ||||| ||||||||||||||||||||||||| ||||   |||||| |||| ||||| || | ||||||| ||     
T  34341518 tagaaattttgttgtaaaaatacaagattttacttttgtcttagcaataattacacaactttttaatacaaacttacatatttgagaactttaaccaatg 34341419  T
Q  364 cctcaacgacactagttagca 384  Q
     |||||  ||||| |||||||    
T  34341418 tctcaagaacactcgttagca 34341398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 318
Target Start/End: Original strand, 32906156 - 32906187
Alignment:
Q  287 aagtttttatttttgtcttagcaataattaca 318  Q
    ||||||||||||||||||||||||||||||||    
T  32906156 aagtttttatttttgtcttagcaataattaca 32906187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 362
Target Start/End: Original strand, 41259984 - 41260118
Alignment:
Q  228 cagtgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaatttta 327  Q
    ||||||| |||||| |||||||||  | |  |||| |||||| | ||| ||| |||| ||||| ||||||||| | ||| |||| ||||||| | ||||     
T  41259984 cagtgccctaagggcaatggttaaggattccattaatagaaactttgtcttgaaaatacaagtctttattttttttttatcaatgattacaccacttttc 41260083  T
Q  328 gttacaaagttacttattttagtattttaaccgat 362  Q
    | | |||| |||||||||||| || ||||||||||    
T  41260084 gatgcaaacttacttattttaatactttaaccgat 41260118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 53650155 - 53650078
Alignment:
Q  245 tggttaaaaaatttattagtagaaattatgttttggaaatgcaag-tttttatttttgtcttagcaataattacacaa 321  Q
    |||||||  |||| ||||||||||||| ||||||| ||||  ||  |||||| ||||||||||||||||| |||||||    
T  53650155 tggttaaggaattcattagtagaaattttgttttgaaaatataaaatttttacttttgtcttagcaataaatacacaa 53650078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 357
Target Start/End: Original strand, 33027147 - 33027258
Alignment:
Q  245 tggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttat 344  Q
    ||||||| ||||| ||||||| ||||| ||||||| |||| |||  ||||||| || | |||| |||||||| ||   |||| | |||||| ||||||||    
T  33027147 tggttaagaaattcattagtaaaaattttgttttg-aaatacaaaattttattcttattttagaaataattatactgctttttgatacaaacttacttat 33027245  T
Q  345 tttagtattttaa 357  Q
    |||| ||||||||    
T  33027246 tttaatattttaa 33027258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 42009726 - 42009690
Alignment:
Q  290 tttttatttttgtcttagcaataattacacaaatttt 326  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  42009726 tttttatttttgtcttagtaataattacacaactttt 42009690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 350
Target Start/End: Complemental strand, 2223788 - 2223669
Alignment:
Q  231 tgccttaagggtaatggttaaaaaatttattagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagtt 330  Q
    ||||||||| |||||| ||||  ||| |||||||| ||||| ||||||  |||| ||| |||||| || |||||||  |||||||||| || |||| |||    
T  2223788 tgccttaagagtaatgattaaggaatctattagtaaaaattctgttttaaaaatacaaatttttacttctgtcttaataataattacataattttttgtt 2223689  T
Q  331 acaaagttacttattttagt 350  Q
     ||| |||||||||||||||    
T  2223688 gcaatgttacttattttagt 2223669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 369
Target Start/End: Original strand, 23131454 - 23131564
Alignment:
Q  259 attagtagaaattatgttttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 358  Q
    ||||||||||| | ||| ||| ||||  || |||||| |||||| |||||||||||||| ||| ||||  || |||| ||||||||||||||| ||||||    
T  23131454 attagtagaaactttgtcttgaaaatataaatttttacttttgttttagcaataattacgcaactttttattgcaaaattacttattttagtactttaac 23131553  T
Q  359 cgatacctcaa 369  Q
    | ||| |||||    
T  23131554 caataactcaa 23131564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 359
Target Start/End: Complemental strand, 29694388 - 29694306
Alignment:
Q  277 ttggaaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaacc 359  Q
    |||||||| ||||||||||||||||||||| |||||||||||  | ||||   | |||| ||||||||||||||| |||||||    
T  29694388 ttggaaatacaagtttttatttttgtcttaacaataattacatcacttttcaatgcaaacttacttattttagtactttaacc 29694306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 358
Target Start/End: Original strand, 246547 - 246624
Alignment:
Q  281 aaatgcaagtttttatttttgtcttagcaataattacacaaattttagttacaaagttacttattttagtattttaac 358  Q
    |||| |||||||||| |||| ||| |||||||||||||| | |||| | | |||| ||||||||||||||| ||||||    
T  246547 aaatacaagtttttacttttttctgagcaataattacaccacttttcgatgcaaacttacttattttagtactttaac 246624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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