View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_25 (Length: 399)
Name: NF2652_low_25
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 72 - 303
Target Start/End: Complemental strand, 2702068 - 2701837
Alignment:
| Q |
72 |
atatttcagcttttgccagaggaagttggggaagcgttgaaagaagcagctgtgatatctatgggaactgaaattggtgaactagatttggcaaatatca |
171 |
Q |
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| T |
2702068 |
atatttcagattttgacagaggaagttgaagcagagttgaaagaagcagctgtgatatctatgggaactgaaattggtgaactagatttggcaaatatca |
2701969 |
T |
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| Q |
172 |
aagagctatgtgaccagattttatctctttcggaatatagagctcgactctatgattatctcaagagtaggatgaacaccattgaacccaatttgactgc |
271 |
Q |
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| T |
2701968 |
gagagctatgtgaccaggttctgtctctttcagaatacagagctcagctctatgattatctaaagagtaggatgaataccattgcacccaatttgactgc |
2701869 |
T |
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| Q |
272 |
tatgaccggggagcttgttggtgctcgcctca |
303 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
2701868 |
tatggttggggagcttgttggtgctcgcctca |
2701837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 286 - 385
Target Start/End: Complemental strand, 2708535 - 2708436
Alignment:
| Q |
286 |
ttgttggtgctcgcctcactgctcacgaactcgacttgttaaatattacatagttgcctgacagtactatgcagattctttgtgctgaagactaaatatg |
385 |
Q |
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| T |
2708535 |
ttgttggtgctcgcctcactgctcacgaactcgacttgttaaatattacatagttgcctgacagtactgtgcagattctttgtgctgaagactaaatatg |
2708436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 74 - 303
Target Start/End: Original strand, 26715327 - 26715556
Alignment:
| Q |
74 |
atttcagcttttgccagaggaagttggggaagcgttgaaagaagcagctgtgatatctatgggaactgaaattggtgaactagatttggcaaatatcaaa |
173 |
Q |
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||||||| ||||| ||||||| |||| || || | |||| ||||| | |||||||| |||||||||||||||||||| || |||||| ||||||| | | |
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| T |
26715327 |
atttcagattttgtcagaggaggttgaggcagaggtgaaggaagcttcagtgatatcaatgggaactgaaattggtgagcttgatttgtcaaatattaga |
26715426 |
T |
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| Q |
174 |
gagctatgtgaccagattttatctctttcggaatatagagctcgactctatgattatctcaagagtaggatgaacaccattgaacccaatttgactgcta |
273 |
Q |
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||||| ||||| ||| |||| ||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26715427 |
gagctctgtgatcaggttttgtctctatcagaatacagagctcaactctatgattatctcaagagtaggatgaacaccattgcacccaatttgactgcta |
26715526 |
T |
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| Q |
274 |
tgaccggggagcttgttggtgctcgcctca |
303 |
Q |
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|| |||||||||||||||||||| |||| |
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| T |
26715527 |
tggttggggagcttgttggtgctcgactca |
26715556 |
T |
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