View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2652_low_26 (Length: 397)
Name: NF2652_low_26
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 14527273 - 14526884
Alignment:
| Q |
1 |
tcgctgctgcttgaaaacccgagctcttcttagttgtgttcccacacacagttctatcttcttttcctgtatactcactnnnnnnnctatagttcgcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
14527273 |
tcgctgctgcttgaaaacccgagctcttcttagttgtgttcccacacacagttctatcttcttttcctgtatactcactaaaaaaactatagttcacaga |
14527174 |
T |
|
| Q |
101 |
cctcgtgaagcaaccatcaaggtaaatgtgaccggagttataagggaagcactgaggaagaaccgtgcgcgcctcagcataacacaacacacagtcaagt |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14527173 |
cctcatgaagcaaccatcaaggtaaatgcgaccggagttataagggaagcactgaggaagaaccgtgcgcgcctcagcataacacaacacacagtcaagt |
14527074 |
T |
|
| Q |
201 |
aatgaaagatctccatagcattgtgctaggccatagttatcatcaggtcctgtccctgtaactgctgtgccgaagccggtactgcgcatctgctcgctaa |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14527073 |
aatgaaagatatccatagcattgtgctaggccatagttatcatcaggtcctgtccctgtaactgctgtgccgaagccggtactgcgcatctgctcgctaa |
14526974 |
T |
|
| Q |
301 |
tcttctccatagtcgcaacaaaattcggaacaaagatgcttgtgttatgctctacttgatggccacatgttatcataactgtctctgctc |
390 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14526973 |
tcttctccatagttgcaacaaaattcggaacaaagatgcttgtgttatgctctacttgatggccacatgttatcataactgtctttgctc |
14526884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University