View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_29 (Length: 359)
Name: NF2652_low_29
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 87 - 352
Target Start/End: Original strand, 32993026 - 32993290
Alignment:
| Q |
87 |
ttatgtattgagatttatcacgactttgatgaccacacgcgtcattgtttttgacctgcaccgtttgatatcaaaacaacaatcaagatcgttttaatct |
186 |
Q |
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| T |
32993026 |
ttatgtattcagatttatcacgactttgatgaccacacgcgtcatagtttttgacctccaccatttgatatcaaaacaacaatcaagatcgttttaatct |
32993125 |
T |
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| Q |
187 |
tgttttgttatcgtataatttggacagttggattccatattaacaaccatttcccatctacgtttaactgaatggnnnnnnnnactgcagtaaatcccgg |
286 |
Q |
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| T |
32993126 |
tgttttgttatcttgtaatttggaccgttggattccata-taacaaccatttcgcatctacgtttaactgaatggttttttttactgcagtaaatcccgg |
32993224 |
T |
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| Q |
287 |
tcccttttccttacaccatttttcctccatcttgaatcattatgttccttttccattattttcttc |
352 |
Q |
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| T |
32993225 |
tcccttttccatacaccatttttcctccatcttgaatcattatgttccttttccattattttcttc |
32993290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 32992934 - 32993000
Alignment:
| Q |
21 |
ctctggaattcgtaagtatgtgcgttcaactttcgttgtcaatataaagactttgttggtggataat |
87 |
Q |
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| T |
32992934 |
ctctggaattcgtaagtatgtgtgttcaactttcgttgtcaatgtaaagactttgttggtggataat |
32993000 |
T |
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