View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_3 (Length: 859)
Name: NF2652_low_3
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 740; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 11 - 843
Target Start/End: Complemental strand, 41777209 - 41776361
Alignment:
| Q |
11 |
agtagcatagggaatggggaacctcttgagcaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacc |
110 |
Q |
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| T |
41777209 |
agtaccatagggaatggggaacctcttgagtaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacc |
41777110 |
T |
|
| Q |
111 |
tgcaatcaaaatccttgtaagttaaattgcttaagtttttagcttaaaatcaaactgtgtcatgcatgtgaagggatttgggaaacagatttgggttgtg |
210 |
Q |
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| T |
41777109 |
tgcaatcaaaatccttgtaagttaaattgcttaagtttttagcttaaaatcaaactgtgtcatgcatgtgaagggatttgggaaacagatttgggttgtg |
41777010 |
T |
|
| Q |
211 |
tgtaggcataatctaatgcagtcacgcagtcagccacatcagtggcaattggttaagatcgaacagtccagataaaataccaagcttgacgtccattctt |
310 |
Q |
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| T |
41777009 |
tgtaggcataatctaatgcagtcacgcagtcagccacattggtggcaattggttaagatcgaacagtccagataaaataccaagcttgacgtccattctt |
41776910 |
T |
|
| Q |
311 |
gattcaatggccaccgatgtagataggtgcgtgactg----------------cacaaaatccaatccgcatgtgaaagggtatgtctatatgtactgta |
394 |
Q |
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| T |
41776909 |
gattcaatggccaccaatgtagctaggtgcgtgactgtatgggactgtgactgcacaaaatccaatccacatgtgaaagggtatgtctatatatactgta |
41776810 |
T |
|
| Q |
395 |
cctgagggatgacaccgatctcaatgagaagagggcccagaatgaatccacctccagaaccaagtagccctccaacggtcccacctaagattccacagag |
494 |
Q |
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| T |
41776809 |
cttgagggatgacaccgatctcaatgagaagagggcccagaatgaatccacctccagaaccaagtagccctccaacggtcccacctaagattccacagag |
41776710 |
T |
|
| Q |
495 |
cgcacaaaacacaatgtgcaacacagtccattcaattgaagcttcacatatacattccaggtttcctgtattcatcctcttcttgtaatccttgtacaat |
594 |
Q |
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| T |
41776709 |
cgcacaaaacacaatgtgcaacacagtccattcaattgaagcttcacatatacattccaggtttcctgtattcatcctcttcttgtaatccttgtacaat |
41776610 |
T |
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| Q |
595 |
ttcattgcttcataccaaaataccactagtgcaataggaaactgaaacagaaagaaaaacatgcatggtaataagctagtattcttttaaaaaaggtcct |
694 |
Q |
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| T |
41776609 |
ttcattgcttcataccaaaataccactagtgcaataggaaactgaaacagaaagaaatacatgcatggtaataagctagtattcttttaaaaaaggtcct |
41776510 |
T |
|
| Q |
695 |
tgatcgcatgacttagaacgcgacatcatggtttctgttgtttccgcgaccacaacacaatggcaaattggcaattgaggccacacaagcccaaatcatt |
794 |
Q |
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| T |
41776509 |
tgatcgcacgacttagaacgcgacatcatggtttctgatgtttccgcgaccacaagacaagggcaaattggcaattgaggccacacaagcccaaatcatt |
41776410 |
T |
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| Q |
795 |
acatgataagttaagcaacaaattgtacttatgaaattggtgttattat |
843 |
Q |
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| T |
41776409 |
acatgataagttaagcaacaaattgtacttatgaaattggtgttattat |
41776361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 41308348 - 41308303
Alignment:
| Q |
206 |
ttgtgtgtaggcataatctaatgcagtcacgcagtcagccacatca |
251 |
Q |
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| T |
41308348 |
ttgtatgtagtcacaatctgatgcagtcacgcagtcagccacatca |
41308303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 26956953 - 26957042
Alignment:
| Q |
27 |
gggaacctcttgagcaggtagaattcaaccacagacaatgatgatgaaaacatcatcacaaatgtcgctgttgcactagcaacctgcaat |
116 |
Q |
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| T |
26956953 |
gggaacctcttgagaatgtagaactcaaaaacagacaaagatgatgaaaacatcatcacaaatgttgctgttgcactagcaacctacaat |
26957042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 26957512 - 26957584
Alignment:
| Q |
398 |
gagggatgacaccgatctcaatgagaagagggcccagaatgaatccacctccagaaccaagtagccctccaac |
470 |
Q |
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| T |
26957512 |
gagggatgacacctatctcaaggagaagaggccccaaaataaatccacctccagaaccaagtaagcctccaac |
26957584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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