View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_32 (Length: 344)
Name: NF2652_low_32
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 5 - 326
Target Start/End: Complemental strand, 29999240 - 29998918
Alignment:
| Q |
5 |
cagaggtcaagacataactatactagacaaatataatatattttatgttgaaaattaaaaagagtattttgatatcttcgatagtatatattttgggcaa |
104 |
Q |
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| T |
29999240 |
cagaggtcaagacataactatactaaacaaatataatattgtttatgttgaaaattaaaaagagtattttgatatctttgatagtatatattttgggcaa |
29999141 |
T |
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| Q |
105 |
aaagtcacttgagttagtgatggacaagaatttcannnnnnngttgagtctcttgttacttgttctgttttgtttcatgaccagtttctaagtcaaattg |
204 |
Q |
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| T |
29999140 |
aaagtcacttgagttagtgatggacaagaatttcatttttttgtcgagtctcttgttacttgttctgtttaatctcatgaccagtttctaagtcaaattg |
29999041 |
T |
|
| Q |
205 |
gatac-nnnnnnngttactaagtccaatccttatttttaacgtgtacataagctcaatatcatacaatgtcacatgccatccaaaaatgaaaacacttat |
303 |
Q |
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| T |
29999040 |
gatacaaaaaaaagttattaagtccaatccttatttttaacgtgtacataagctcaatatcatacaatgtcacatgccatccaaaaatgaaaacacttaa |
29998941 |
T |
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| Q |
304 |
gctcgatgttccaatgatggttc |
326 |
Q |
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| T |
29998940 |
gctcgatgttccaatgatggttc |
29998918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 39772099 - 39772029
Alignment:
| Q |
39 |
aatatattttatgttgaaaattaaaaagagtattttgatatcttcgatagtatatattttgggcaaaaagt |
109 |
Q |
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| T |
39772099 |
aatatattttatgttggaaaataaaaagggtattttggtatttttgatagtctatatgtcggacaaaaagt |
39772029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 25434327 - 25434275
Alignment:
| Q |
37 |
ataatatattttatgttgaaaattaaaaagagtattttgatatcttcgatagt |
89 |
Q |
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| T |
25434327 |
ataatatattttatgttaaaaaaataaaagagtattttgatatttttgatagt |
25434275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 42250216 - 42250260
Alignment:
| Q |
45 |
ttttatgttgaaaattaaaaagagtattttgatatcttcgatagt |
89 |
Q |
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| T |
42250216 |
ttttatgttggaaaataaaaagggtattttgatatattcgatagt |
42250260 |
T |
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