View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_33 (Length: 342)
Name: NF2652_low_33
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 10 - 323
Target Start/End: Complemental strand, 763175 - 762863
Alignment:
| Q |
10 |
gaagcataggttttgaaacaagctttagggtacattttatcatgagacaaccaacaatgttgctaacttaccagctcgagggacattgtcatatgctagt |
109 |
Q |
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| T |
763175 |
gaagcatgggttttgaaacaagctttagggtacattttatcatgagacaaccaacaatgttgctaacttactagctcgagggacattgtcatatgctagt |
763076 |
T |
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| Q |
110 |
tgctaagtgtttgattatattttatcatgtattttgaccactttgatagatgaaatgagttatttttgtgaccgtnnnnnnngtctattttaatttcatt |
209 |
Q |
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| T |
763075 |
tgctaagtgtttgattatattttgtcatgtattttgaccactttgataaatgaaatgagttatttttgtg-ctgtaaaaaaagtctattttaatttcatt |
762977 |
T |
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| Q |
210 |
agcaagtttgttttaggagcatgttgagacaattattaaacacgatgaatattatttttcgtcaatcatcgggttcttaggggaaggggtacatgataat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
762976 |
agcaagtttgttttaggagcatgttgagacaattattaaacacgatgaatattatttttcgttaatcatcgggttctcaggggaaggggtacatgataaa |
762877 |
T |
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| Q |
310 |
ctagagcttggtct |
323 |
Q |
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| T |
762876 |
ctagagcttggtct |
762863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 26408060 - 26408208
Alignment:
| Q |
35 |
tagggtacattttatcatgagacaa-ccaacaatgttgctaacttaccagctcgagggacattgtcatatgctagttgctaagtgtttgattatatttta |
133 |
Q |
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| T |
26408060 |
taggatacgttttattatgagacaaaccaaaaatgtagctcatttactagtttgagcggcattgtcatatgttagtcgttaagtgtttgattatatttca |
26408159 |
T |
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| Q |
134 |
tcatgtattttgaccactttgatagatgaaatgagttatttttgtgacc |
182 |
Q |
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| T |
26408160 |
tcctatattatgattactttgataaataaattgagttaattttgtgacc |
26408208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 52010947 - 52011029
Alignment:
| Q |
60 |
ccaacaatgttgctaacttaccagctcgagggacattgtcatatgctagttgctaagtgtttgattatattttatcatgtatt |
142 |
Q |
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| T |
52010947 |
ccaacaacgtagctcacttactagctcgagcggcattatcatatcctagtcgttaagtatttgattatattttatcctgtatt |
52011029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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