View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2652_low_34 (Length: 342)
Name: NF2652_low_34
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_34 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 7344566 - 7344358
Alignment:
| Q |
8 |
tgtaaattaaactatagaagaaaaagatatataaaattttagagaatattgaaagttgatcatcaaaacaagatccagattccagaatagtacattgcca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7344566 |
tgtaaattaaactatagaagaaaaagatatataaaattttagagaatattgaaagttgatcatcaaaacaagatccagattccagaatagtacattgcca |
7344467 |
T |
|
| Q |
108 |
ggagaaggttcatgaacattccaaaacacgtaagtatcaataacatctaaccctccatcttttgctttctgaatcagatcctcccacatctacacacatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7344466 |
ggagaaggttcatgaacattccaaaacacataagtatcaataacatctaaccctccatcttttgctttttgaatcagatcctcccacatctacacacatt |
7344367 |
T |
|
| Q |
208 |
tcaaatttc |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
7344366 |
tcaaatttc |
7344358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 7344302 - 7344232
Alignment:
| Q |
272 |
tagtatagtatatacttcaggggtgcttcttggataatgaatggaaccagagatgaggattctcctttggc |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7344302 |
tagtatagtatatacttcaggggtgcttcttggataatgaatggaaccagagatgaggattctcctttggc |
7344232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 8142408 - 8142510
Alignment:
| Q |
96 |
agtacattgccaggagaaggttcatgaacattccaaaacacgtaagtatcaataacatctaaccctccatcttttgctttctgaatcagatcctcccaca |
195 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| || || ||||| ||||| || ||||| ||||| ||||| | ||||||||| ||||||| |
|
|
| T |
8142408 |
agtacatttccaggagaaggttcatgaacattccaaaacacataggtttcaattacatccaaacctccttctttagctttgtaaatcagatcttcccaca |
8142507 |
T |
|
| Q |
196 |
tct |
198 |
Q |
| |
|
||| |
|
|
| T |
8142508 |
tct |
8142510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 8142618 - 8142669
Alignment:
| Q |
291 |
ggggtgcttcttggataatgaatggaaccagagatgaggattctcctttggc |
342 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
8142618 |
ggggtgcttctaggataatgtatggaaccagaaaaaaggattctcctttggc |
8142669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 52645445 - 52645386
Alignment:
| Q |
283 |
atacttcaggggtgcttcttggataatgaatggaaccagagatgaggattctcctttggc |
342 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| || |||||||| ||||||| |
|
|
| T |
52645445 |
atacttcaggggtgcttctaggatagtgaatggaaccagaaattaggattcttctttggc |
52645386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 52645627 - 52645526
Alignment:
| Q |
98 |
tacattgccaggagaaggttcatgaacattccaaaacacgtaagtatcaataacatctaaccctccatcttttgctttctgaatcagatcctcccacatc |
197 |
Q |
| |
|
|||||||| |||||| ||||||||||||| ||| || || ||||| || |||||||| | || |||| ||| |||||| ||| ||||| ||||||||| |
|
|
| T |
52645627 |
tacattgctaggagatggttcatgaacatcccagaagacataagtgtctataacatcaagaccaccatgtttggctttcctaattagatcttcccacatc |
52645528 |
T |
|
| Q |
198 |
ta |
199 |
Q |
| |
|
|| |
|
|
| T |
52645527 |
ta |
52645526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 42990391 - 42990437
Alignment:
| Q |
294 |
gtgcttcttggataatgaatggaaccagagatgaggattctcctttg |
340 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| || ||||| |
|
|
| T |
42990391 |
gtgcttcttggataatgaatggatccagaaatgaggatcctactttg |
42990437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University