View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2652_low_4 (Length: 716)
Name: NF2652_low_4
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 10 - 697
Target Start/End: Original strand, 12579763 - 12580452
Alignment:
| Q |
10 |
aagaaaatcattgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttg |
109 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
12579763 |
aagaaaatcattaacacttgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagggtctatgcggttg |
12579862 |
T |
|
| Q |
110 |
atcaacatgggtgtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatc |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
12579863 |
atcaatatgggtgtggttgatagtttgtgaacctctcccgtatccaaacttaagccaagtaaaaaggtgatggaagagtaaattaaacaggatatatatc |
12579962 |
T |
|
| Q |
210 |
atcaccaacaagatattttgacagannnnnnn--cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttct |
307 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
12579963 |
atcaccaacaagatattttgacagatttttttttcttaaataatgttaaatccttatttatgctagccaaaacaattgccaccaaagaaattggatttct |
12580062 |
T |
|
| Q |
308 |
tctagcaagattaacaacaacagaaaacaaacaacttgtcaccattttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatctt |
407 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
12580063 |
tctagcaagattaacaccaacagaaaacaaacaacttgtcaccattttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcctcatgtt |
12580162 |
T |
|
| Q |
408 |
caattccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccataatgaatgaacaatcattggaagataacatcatggaggt |
507 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12580163 |
caattccatcatattttcttgtcaaagattatagtcttctaatgcttagtctcatacccataatgaatgaacaatcattggaagataacatcatggaggt |
12580262 |
T |
|
| Q |
508 |
gatggaatatttcatgctctcagcaactagtgatagtgaaccaaatcttataacaaccaatttactcaaacctattgcaaattccattgatgaaccaact |
607 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12580263 |
gatggaagatttcatgctctcagcaactagtgataatgaaccaactcttagaacaaccaatttactcaaacctattgcaaattccattgatgaaccaact |
12580362 |
T |
|
| Q |
608 |
cttgaaagaaagcaaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgtt |
697 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12580363 |
cttgaaagatagcaaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgtt |
12580452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 10 - 697
Target Start/End: Original strand, 12519468 - 12520163
Alignment:
| Q |
10 |
aagaaaatcattgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgt----- |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | |
|
|
| T |
12519468 |
aagaaaatcattgacacttgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagagtctatatcatta |
12519567 |
T |
|
| Q |
105 |
----ggttgatcaacatgggtgtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaagg |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| || |
|
|
| T |
12519568 |
ccatgggtgatcaacatgggtgtggttgatagtttgt-aacctctcccgtatccaaacttaacccaaataaaaaggtgatagaagagtaaattaaacaga |
12519666 |
T |
|
| Q |
201 |
atatatatcatcaccaacaagatattttgacagannnnnnncttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattg |
300 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12519667 |
atatatatcattacctacaagatattttgacagatttttttcttaaataaagttaagtccttatttatgctagccaaaacaactgccaccaaagcaattg |
12519766 |
T |
|
| Q |
301 |
gatttcttctagcaagattaacaacaacagaaaacaaacaacttgtcaccattttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggct |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12519767 |
gatttcttctagcaagattaacaccaacagaaaacaaacaatttgtcaccattttttatgaggaaaaacaaaaattgacaaccaagttaaaaggaaggct |
12519866 |
T |
|
| Q |
401 |
tcatcttcaattccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccataatgaatgaacaatcattggaagataacatca |
500 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
12519867 |
tcatgttcaattccatcatattttcttgtcaaagattatagtcttctaatgcttagtctcatacccataatgaaaaaacaatcattagaagataacatca |
12519966 |
T |
|
| Q |
501 |
tggaggtgatggaatatttcatgctctcagcaactagtgatagtgaaccaaatcttataacaaccaatttactcaaacctattgcaaattccattgatga |
600 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12519967 |
tggaggtgatggaagatttcatgctctcaacaaccagtgatagtgaaccaaatcttagaacaaccaatttactcaaacctattgcaaattccattgatga |
12520066 |
T |
|
| Q |
601 |
accaactcttgaaagaaagcaaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgtt |
697 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12520067 |
accaactcttgaaagatagcaaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgtt |
12520163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 369 - 697
Target Start/End: Original strand, 12495970 - 12496298
Alignment:
| Q |
369 |
caaaaattgacaaccaagtaaaaaggaaggcttcatcttcaattccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccat |
468 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12495970 |
caaagattgacaaccaagtaaaaaggaaggcttcatcttcaattccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccat |
12496069 |
T |
|
| Q |
469 |
aatgaatgaacaatcattggaagataacatcatggaggtgatggaatatttcatgctctcagcaactagtgatagtgaaccaaatcttataacaaccaat |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12496070 |
aatgaatgaacaatcattggaagataacatcatggaggtgatggaatatttcatgctctcagcaactagtgatagtgaaccaaatcttataacaaccaat |
12496169 |
T |
|
| Q |
569 |
ttactcaaacctattgcaaattccattgatgaaccaactcttgaaagaaagcaaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcac |
668 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12496170 |
ttactcaaacctattgcaaatttcattgatgaaccaactcttaaaagaaagcaaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcac |
12496269 |
T |
|
| Q |
669 |
acttacccatcattatggatggatatgtt |
697 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12496270 |
acttacccatcattatggatggatatgtt |
12496298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 697
Target Start/End: Complemental strand, 12497651 - 12496956
Alignment:
| Q |
10 |
aagaaaatcattgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttg |
109 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||| ||||||| |||||| ||||||| ||||||||| | |||| | |||||| | |||||||||||| |
|
|
| T |
12497651 |
aagaaaatcattgacagttgagcctaatgcacacttaacattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttg |
12497552 |
T |
|
| Q |
110 |
atcaacatgggt-gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatat |
208 |
Q |
| |
|
||||||||| || ||||||| |||||| || |||||||| | |||||| | | |||| ||||||||||| | || |||||||| || || | |||||| |
|
|
| T |
12497551 |
atcaacatgagttgtggttgcaagtttgcgagcctctccca-acccaaacatgaaccaagtaaaaaggtgagagaaaagtaaattcaacagaaaatatat |
12497453 |
T |
|
| Q |
209 |
catcaccaacaagatattttgacagannnnnnn-------cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattgg |
301 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| | ||||| |||| | |
|
|
| T |
12497452 |
tatcaccaataagatgttttgacagatcaataattgttttcttaaataaagttaaatcgttatttatgctagccaaaacagctggcggcaaagtaatttg |
12497353 |
T |
|
| Q |
302 |
atttcttctagcaagattaacaacaacagaaaacaaacaacttgtcaccattttt-tatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggct |
400 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
12497352 |
atttcttctagcaagattaatagcaatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggct |
12497253 |
T |
|
| Q |
401 |
tcatcttcaattccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccataatgaatgaacaatcattggaagataacatca |
500 |
Q |
| |
|
|||| ||||||||| |||| ||||| |||||||||| |||||| | |||| || |||||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
12497252 |
tcatgttcaattccatcatggtttctcgtcaaagattatagccttttcatgcataatctcatacccatgatgaataaacaagcattggaagataacatca |
12497153 |
T |
|
| Q |
501 |
tggaggtgatggaatatttcatgctctcagcaactagtgatagtgaaccaaatcttataacaaccaatttactcaaacctattgcaaattccattgatga |
600 |
Q |
| |
|
||||||||| |||||||| |||||| ||| | | ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12497152 |
tggaggtgaaggaatattgcatgctttcaactgttggtgatagtgaaccaactcttaaaacaacccatttactcaaacctattgcaaattccattgatga |
12497053 |
T |
|
| Q |
601 |
accaactcttgaaagaaagcaaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgtt |
697 |
Q |
| |
|
| ||| |||| |||||||||||| |||||||| ||||| |||| |||||||| |||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
12497052 |
aacaattcttaaaagaaagcaaactgatccttcaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgtt |
12496956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 697
Target Start/End: Complemental strand, 12521516 - 12520821
Alignment:
| Q |
10 |
aagaaaatcattgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttg |
109 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||| ||||||| |||||| ||||||| ||||||||| | |||| | |||||| | |||||||||||| |
|
|
| T |
12521516 |
aagaaaatcattgacagttgagcctaatgcacacttaacattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttg |
12521417 |
T |
|
| Q |
110 |
atcaacatgggt-gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatat |
208 |
Q |
| |
|
||||||||| || ||||||| |||||| || |||||||| | |||||| | | |||| ||||||||||| | || |||||||| || || | |||||| |
|
|
| T |
12521416 |
atcaacatgagttgtggttgcaagtttgcgagcctctccca-acccaaacatgaaccaagtaaaaaggtgagagaaaagtaaattcaacagaaaatatat |
12521318 |
T |
|
| Q |
209 |
catcaccaacaagatattttgacagannnnnnn-------cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattgg |
301 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| | ||||| |||| | |
|
|
| T |
12521317 |
tatcaccaataagatgttttgacagatcaataattgttttcttaaataaagttaaatcgttatttatgctagccaaaacagctggcggcaaagtaatttg |
12521218 |
T |
|
| Q |
302 |
atttcttctagcaagattaacaacaacagaaaacaaacaacttgtcaccattttt-tatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggct |
400 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
12521217 |
atttcttctagcaagattaatagcaatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggct |
12521118 |
T |
|
| Q |
401 |
tcatcttcaattccgtcatattttcttgtcaaagattgcagccttctaatgcttagtctcatacccataatgaatgaacaatcattggaagataacatca |
500 |
Q |
| |
|
|||| ||||||||| |||| ||||| |||||||||| |||||| | |||| || |||||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
12521117 |
tcatgttcaattccatcatggtttctcgtcaaagattatagccttttcatgcataatctcatacccatgatgaataaacaagcattggaagataacatca |
12521018 |
T |
|
| Q |
501 |
tggaggtgatggaatatttcatgctctcagcaactagtgatagtgaaccaaatcttataacaaccaatttactcaaacctattgcaaattccattgatga |
600 |
Q |
| |
|
||||||||| |||||||| |||||| ||| | | ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12521017 |
tggaggtgaaggaatattgcatgctttcaactgttggtgatagtgaaccaactcttaaaacaacccatttactcaaacctattgcaaattccattgatga |
12520918 |
T |
|
| Q |
601 |
accaactcttgaaagaaagcaaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgtt |
697 |
Q |
| |
|
| ||| |||| |||||||||||| |||||||| ||||| |||| |||||||| |||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
12520917 |
aacaattcttaaaagaaagcaaactgatccttcaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgtt |
12520821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 12495667 - 12495972
Alignment:
| Q |
10 |
aagaaaatcattgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12495667 |
aagaaaatcattgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagggtctatgtggttg |
12495766 |
T |
|
| Q |
110 |
atcaacatgggtgtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatc |
209 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12495767 |
atgaacatgggtgtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaataggatatatatc |
12495866 |
T |
|
| Q |
210 |
atcaccaacaagatattttgacagannnnnnncttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttc |
309 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12495867 |
atcaccaacaagatattttgacagatttttttattaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttc |
12495966 |
T |
|
| Q |
310 |
tagcaa |
315 |
Q |
| |
|
|||||| |
|
|
| T |
12495967 |
tagcaa |
12495972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 242 - 697
Target Start/End: Complemental strand, 12581595 - 12581139
Alignment:
| Q |
242 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | | ||||| |||| ||||||||||||||||||||| | ||| |||||||||| || |
|
|
| T |
12581595 |
cttaaataaagttaaatccttatttatgctagccaaaacagtttgcggcaaagtaattcgatttcttctagcaagattaatagcaatagaaaacaaataa |
12581496 |
T |
|
| Q |
342 |
cttgtcaccattttt-tatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaattccgtcatattttcttgtcaaagattgca |
440 |
Q |
| |
|
||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||| ||||||||| | |
|
|
| T |
12581495 |
cttttcaccatttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttcatgttcaattccatcatggtttctcatcaaagattata |
12581396 |
T |
|
| Q |
441 |
gccttctaatgcttagtctcatacccataatgaatgaacaatcattggaagataacatcatggaggtgatggaatatttcatgctctcagcaactagtga |
540 |
Q |
| |
|
||||| | |||| ||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||| ||| | | |||| |
|
|
| T |
12581395 |
gccttttcatgcatagtctcatacccatgatgaataaacaagcattggaagataacatcatggaggtgaaggaaaatttcatgctttcaactgttggtga |
12581296 |
T |
|
| Q |
541 |
tagtgaaccaaatcttataacaaccaatttactcaaacctattgcaaattccattgatgaaccaactcttgaaagaaagcaaattgatccttgaaagagg |
640 |
Q |
| |
|
||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
12581295 |
tagtgaaccaactcttaaaacagcccatttactcaaacctattgcaaattccattgatgaaacaattcttaaaagaaagcaaattgatccttgaaagaaa |
12581196 |
T |
|
| Q |
641 |
tcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgtt |
697 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
12581195 |
gcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgtt |
12581139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 12581766 - 12581655
Alignment:
| Q |
10 |
aagaaaatcattgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttg |
109 |
Q |
| |
|
||||||||||||| || ||||| |||||||| ||| ||||||| ||||| ||||||| ||||||||| | |||| | |||| | | | |||||||||| |
|
|
| T |
12581766 |
aagaaaatcattggcagttgagcctaatgcacacttaacattgctaattttcaaggccagaaccttatgccacctcaacaatatatgttatatgtggttg |
12581667 |
T |
|
| Q |
110 |
atcaacatgggt |
121 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12581666 |
atcaacatgggt |
12581655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 10 - 412
Target Start/End: Complemental strand, 20046566 - 20046155
Alignment:
| Q |
10 |
aagaaaatcattgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttg |
109 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||| |||||| ||||||| ||| || |||||||||| | |||||| ||||||||||| || | ||| |
|
|
| T |
20046566 |
aagaaaatcatcgacagttgagtctaatgccaacttaacattatcaattttcaatgcgtgaaccttatgccacctaaacaataaagggtcgctgggattg |
20046467 |
T |
|
| Q |
110 |
atcaacatgggt-gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatat |
208 |
Q |
| |
|
|||||||||||| ||||| | | |||| ||||||||||| | |||||||| | |||||||||| ||||||| || |||||||| || |||| || ||| |
|
|
| T |
20046466 |
atcaacatgggttgtggtggtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggtgatagaatagtaaattcaacaggaaatctat |
20046367 |
T |
|
| Q |
209 |
catcaccaacaagatattttgacagannnnnnn-------cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattgg |
301 |
Q |
| |
|
|| ||||||| |||||||| ||||| |||||||||| |||||||||||| ||||||| |||||||| | | ||||||||||||| |
|
|
| T |
20046366 |
caccaccaaccggatattttaacagatcaataattgtgttcttaaataaacttaaatccttatatatgctacccaaaacagcaggtgccaaagcaattgg |
20046267 |
T |
|
| Q |
302 |
atttcttctagcaagattaacaacaacagaaaacaaacaacttgtcaccat-tttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggct |
400 |
Q |
| |
|
||||| |||||||||||||| | ||| ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20046266 |
atttcctctagcaagattaatagcaatagaaaacaaacaatttttcaccatatttttatgaggaaaaacaaaaattgacaaccaagtagtaaggaaggct |
20046167 |
T |
|
| Q |
401 |
tcatcttcaatt |
412 |
Q |
| |
|
|| | ||||||| |
|
|
| T |
20046166 |
tcgtgttcaatt |
20046155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 242 - 412
Target Start/End: Complemental strand, 26647207 - 26647036
Alignment:
| Q |
242 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
341 |
Q |
| |
|
|||||| ||| |||||||||||| || |||||| |||||| | | |||||||||||||||| | ||||||||||| |||| ||| || |||||||||| |
|
|
| T |
26647207 |
cttaaacaaacttaaatccttatataagctagctaaaacagccggtgccaaagcaattggattccctctagcaagatgaacagcaataggaaacaaacaa |
26647108 |
T |
|
| Q |
342 |
cttgtcaccatttttt-atgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
||| |||||| ||| ||||||||||||| ||| ||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
26647107 |
cttttcaccaaatttagatgaggaaaaacataaactgacaaccaagtagaaaggaatgcttcatgttcaatt |
26647036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 243 - 412
Target Start/End: Complemental strand, 19951326 - 19951156
Alignment:
| Q |
243 |
ttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaac |
342 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||||| ||| |||||||||| ||||||| ||||||||||| || | ||| || | | || ||| |
|
|
| T |
19951326 |
ttaaacaaagttaaatccttatatatgctagctaaaacagctggagccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataac |
19951227 |
T |
|
| Q |
343 |
ttgtcaccatttt-ttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
| |||||| ||| |||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
19951226 |
tcctcaccaatttattattaggaaaaacaaaaagtgacaaccaagtaacaaggaaggcttcatgttcaatt |
19951156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 249 - 412
Target Start/End: Complemental strand, 19956283 - 19956116
Alignment:
| Q |
249 |
aaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaacttgtca |
348 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||| |||||||||| ||||||| ||||||||||| |||||||| || ||||||| ||||| ||| |
|
|
| T |
19956283 |
aaagttaaatccttatatatgctagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacaacaataggaaacaaataacttttca |
19956184 |
T |
|
| Q |
349 |
c----cattttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
| | | ||||||||| |||||||||||||||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
19956183 |
cggaagaatatttatgagggaaaacaaaaattgacaaccaagtagcaagaaaagcttcatgttcaatt |
19956116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 456 - 612
Target Start/End: Original strand, 20045530 - 20045686
Alignment:
| Q |
456 |
gtctcatacccataatgaatgaacaatcattggaagataacatcatggaggtgatggaatatttcatgctctcagcaactagtgatagtgaaccaaatct |
555 |
Q |
| |
|
|||||| ||||| ||||| |||||| |||| ||||||| ||| |||||||||| |||| |||| ||||| ||| | | | ||||||||||||||| ||| |
|
|
| T |
20045530 |
gtctcaaacccaggatgaacgaacaaacattagaagataccattatggaggtgaaggaagattttatgctttcacctaatggtgatagtgaaccaactct |
20045629 |
T |
|
| Q |
556 |
tataacaaccaatttactcaaacctattgcaaattccattgatgaaccaactcttga |
612 |
Q |
| |
|
|| ||| | | ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20045630 |
tagaacggctcacttactcaaacctattgcaaattcaattgatgaaccaactcttga |
20045686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 242 - 386
Target Start/End: Complemental strand, 26653355 - 26653210
Alignment:
| Q |
242 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
341 |
Q |
| |
|
|||||| ||||| || ||||||| ||| ||||| |||||| ||| |||||||||| ||||||| ||||||||||| |||| ||| |||||||||| || |
|
|
| T |
26653355 |
cttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacagcaatagaaaacaaagaa |
26653256 |
T |
|
| Q |
342 |
cttgtcac-cattttttatgaggaaaaacaaaaattgacaaccaag |
386 |
Q |
| |
|
||| |||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
26653255 |
cttttcactaattctatatgaggaaaaacaaaaattgacaaccaag |
26653210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 412
Target Start/End: Original strand, 20015891 - 20016287
Alignment:
| Q |
28 |
tgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatggg-tgtggt |
126 |
Q |
| |
|
|||||||||||| | | |||||||||||||| ||| ||||||||||||| | |||||| |||||||||||| || |||||||||||||| |||||| |
|
|
| T |
20015891 |
tgagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagggtcttcatgattgatcaacatgggttgtggt |
20015990 |
T |
|
| Q |
127 |
tgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaagatatt |
226 |
Q |
| |
|
|| | || |||||||||||| | ||||| || | ||||||||| |||||| ||| |||| || |||||||| ||||| |||| ||| |||||| |
|
|
| T |
20015991 |
tgtaaaattttgaacctctcccacacccaaatttgaaccaaataaatgggtgattgaagtgtaacttctaaaggatacctatcaccacccacatgatatt |
20016090 |
T |
|
| Q |
227 |
ttgaca-------gannnnnnncttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagatt |
319 |
Q |
| |
|
|||||| | |||||| ||| ||||||| |||| |||||||||||| ||| ||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
20016091 |
ttgacaaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaataggatttcgtctagcaagatg |
20016190 |
T |
|
| Q |
320 |
aacaacaacagaaaacaaacaacttgtcac----cattttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
|| | ||| | ||||||||||||| |||| | | ||||||||| |||||||||||||||| ||||||| ||| || ||||||| ||||||| |
|
|
| T |
20016191 |
aatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagcaagaaatgcttcatgttcaatt |
20016287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 242 - 412
Target Start/End: Complemental strand, 19818760 - 19818589
Alignment:
| Q |
242 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
341 |
Q |
| |
|
|||||| ||| ||||||| |||| ||| ||||||||||| | | |||||||||| ||||| | |||||||||||||||| |||||| ||||| | || |
|
|
| T |
19818760 |
cttaaacaaacttaaatctttataaatgttagccaaaacagccggtgccaaagcaataggattccctctagcaagattaacagcaacaggaaacagataa |
19818661 |
T |
|
| Q |
342 |
cttgtcaccatttt-ttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
|| |||||| || ||||||||||||||||||||||| ||||||||| ||| || ||||||| ||||||| |
|
|
| T |
19818660 |
tttttcaccaaattcttatgaggaaaaacaaaaattgataaccaagtagcaagaaaagcttcatgttcaatt |
19818589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 29 - 412
Target Start/End: Complemental strand, 19849423 - 19849022
Alignment:
| Q |
29 |
gagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt------- |
121 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||||||||||||||| | | |||| |||||||| || |||||| ||||||||| | |
|
|
| T |
19849423 |
gagtctaatgccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggatccccatggttggtcaacatggtttgtggct |
19849324 |
T |
|
| Q |
122 |
gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaag |
221 |
Q |
| |
|
||||||| | ||| |||||||||||| | ||||| || | |||||||||| |||||| ||||||||| | || ||| || ||||| |||||||| | |
|
|
| T |
19849323 |
gtggttgcaaatttttgaacctctcccacacccaaatttgaaccaaataaaagggtgatttaagagtaatctccaagggaaatctatcaccaccaacatg |
19849224 |
T |
|
| Q |
222 |
atattttgaca-------gannnnnnncttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagca |
314 |
Q |
| |
|
| ||||||||| || |||||| |||||||||||||||| || ||||| |||||| | | | |||||||| |||||| ||||||| |
|
|
| T |
19849223 |
acattttgacaaatcagtgattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagca |
19849124 |
T |
|
| Q |
315 |
agattaacaacaacagaaaacaaacaacttgtcaccat----tttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaa |
410 |
Q |
| |
|
|||| ||| ||| || ||||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||| ||| || ||||||| ||||| |
|
|
| T |
19849123 |
agatatacagcaataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaa |
19849024 |
T |
|
| Q |
411 |
tt |
412 |
Q |
| |
|
|| |
|
|
| T |
19849023 |
tt |
19849022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 242 - 412
Target Start/End: Original strand, 20036515 - 20036689
Alignment:
| Q |
242 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
341 |
Q |
| |
|
|||||| |||||||||||||||| || ||||| |||||| | | | |||||||| |||||| ||||||||||| ||| ||| || ||||||| || |
|
|
| T |
20036515 |
cttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaa |
20036614 |
T |
|
| Q |
342 |
cttgtcaccat----tttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| ||||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
20036615 |
cttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagcaagaaatgcttcatgttcaatt |
20036689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 17115159 - 17115011
Alignment:
| Q |
10 |
aagaaaatcattgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttg |
109 |
Q |
| |
|
||||||||||| |||| | |||||||||| | || |||||||||||||| || |||||||||| ||| | |||||| |||||||||||| |||||| |
|
|
| T |
17115159 |
aagaaaatcatcgacagctaagtctaatgctagcttaacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagggtctccatggttg |
17115060 |
T |
|
| Q |
110 |
atcaacatgg-gtgtggttgatagtttgtgaacctctcccgtatccaaa |
157 |
Q |
| |
|
|||||||||| |||||||| | ||| |||||||||||| ||||||| |
|
|
| T |
17115059 |
atcaacatggattgtggttgtaaatttttgaacctctcccacatccaaa |
17115011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 249 - 388
Target Start/End: Complemental strand, 19838592 - 19838449
Alignment:
| Q |
249 |
aaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaacttgtca |
348 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||| ||| |||||||||| | ||||| ||||||||||| |||||||| | ||||||| | ||| ||| |
|
|
| T |
19838592 |
aaagttaaatcattatatatgctagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaacaacaattggaaacaaaaagcttttca |
19838493 |
T |
|
| Q |
349 |
c----cattttttatgaggaaaaacaaaaattgacaaccaagta |
388 |
Q |
| |
|
| | | || || |||||||||||||||||||||||||||| |
|
|
| T |
19838492 |
cgcaagagtgttgattaggaaaaacaaaaattgacaaccaagta |
19838449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 19812369 - 19812312
Alignment:
| Q |
355 |
tttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
19812369 |
tttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaatt |
19812312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 19858496 - 19858404
Alignment:
| Q |
29 |
gagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt |
121 |
Q |
| |
|
||||||||||| |||| ||||||||||| || |||||||| |||||||| | |||||| |||||||| ||| || ||||||||||||||| |
|
|
| T |
19858496 |
gagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaaggttctccatgcttgatcaacatgggt |
19858404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Complemental strand, 30914728 - 30914675
Alignment:
| Q |
359 |
tgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
30914728 |
tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt |
30914675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 19853599 - 19853544
Alignment:
| Q |
357 |
tatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
19853599 |
tatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatt |
19853544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 523
Target Start/End: Original strand, 19943133 - 19943192
Alignment:
| Q |
464 |
cccataatgaatgaacaatcattggaagataacatcatggaggtgatggaatatttcatg |
523 |
Q |
| |
|
||||| |||||||||||| ||||| |||||| |||||||||| ||| |||| |||||||| |
|
|
| T |
19943133 |
cccatgatgaatgaacaaccattgaaagatagcatcatggagatgagggaagatttcatg |
19943192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 388
Target Start/End: Original strand, 24839897 - 24840036
Alignment:
| Q |
253 |
ttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaacttgtcaccat |
352 |
Q |
| |
|
||||||| |||| || ||||||||||||| | | |||||| ||| ||||| | |||||| |||| |||| |||||| ||||||| ||| | |||| | |
|
|
| T |
24839897 |
ttaaatcgttatataagctagccaaaacagcaggtgccaaagaaataggattccctctagctagatgaacagcaacaggaaacaaagaacatttcactag |
24839996 |
T |
|
| Q |
353 |
----tttttatgaggaaaaacaaaaattgacaaccaagta |
388 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
24839997 |
agagtatttatgagggaaaacaaaaattgacaaccaagta |
24840036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 19951437 - 19951344
Alignment:
| Q |
139 |
aacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaacaagatattttgaca |
232 |
Q |
| |
|
|||||||||| ||||||| || | |||| ||||| |||||| |||||||| || ||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
19951437 |
aacctctcccaaatccaaatttgaaccaagtaaaagggtgattgaagagtaagttctaaaggatatctatcaccacccacatgatattttgaca |
19951344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 514
Target Start/End: Original strand, 26646422 - 26646475
Alignment:
| Q |
461 |
atacccataatgaatgaacaatcattggaagataacatcatggaggtgatggaa |
514 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| || |||||||||| |||| |
|
|
| T |
26646422 |
atacccatgatgaatgaacaaacattggaagatactattatggaggtgaaggaa |
26646475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 10 - 412
Target Start/End: Original strand, 6397411 - 6397824
Alignment:
| Q |
10 |
aagaaaatcattgacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttg |
109 |
Q |
| |
|
|||||||| || |||| |||||||| |||| |||| || ||||||||||| |||||||||||||||| | |||||| |||||||||||||||||| | |
|
|
| T |
6397411 |
aagaaaattatcgacagttgagtctcatgccaacttaatattgtcaattttaaaggcctgaaccttataccacctaaaaaataaagggtctatgtgggta |
6397510 |
T |
|
| Q |
110 |
atcaacatgggt-gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatat |
208 |
Q |
| |
|
|||||||| ||| ||| | | | ||||||||||| || |||||||| | |||| ||||||||||||| ||||||||||| || | || || ||| |
|
|
| T |
6397511 |
atcaacataggttgtgaacgcaaatgtgtgaacctcttccacgcccaaacttgaaccaagtaaaaaggtgatagaagagtaaattcaacatgaaatttat |
6397610 |
T |
|
| Q |
209 |
catcaccaacaagatattttgacagannnnnnn-------cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattgg |
301 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||| ||||||||||| |||| ||||||||||| || ||||||||||||| |
|
|
| T |
6397611 |
catcaccaacaagatatttcgacaaatcaataattgttttcttaaataaagataaatccttatatatgatagccaaaacagatggtgccaaagcaattgg |
6397710 |
T |
|
| Q |
302 |
atttcttctagcaagattaacaacaacagaaaacaaacaa--cttgtcaccatttttt-atgaggaaaaacaaaaattgacaaccaagtaaaaaggaagg |
398 |
Q |
| |
|
|||| |||||||||||||||| || ||||| ||||||| ||| |||||||||||| | |||||||| || ||||||||||||| ||| |||||||| |
|
|
| T |
6397711 |
attttctctagcaagattaacattaatagaaagcaaacaaaacttttcaccatttttttaggaggaaaagcacaaattgacaaccaggtagcaaggaagg |
6397810 |
T |
|
| Q |
399 |
cttcatcttcaatt |
412 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
6397811 |
cttcatgttcaatt |
6397824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 89 - 412
Target Start/End: Complemental strand, 6398628 - 6398293
Alignment:
| Q |
89 |
aataaagggtctatgtggttgatcaacatgggt-gtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagag |
187 |
Q |
| |
|
||||||| || | ||| ||||||||||||| || ||||||| |||||||||||||||||| | | |||||| | ||| ||||||||||| | |||| |
|
|
| T |
6398628 |
aataaagagtgtctgttgttgatcaacatgagttgtggttgcaagtttgtgaacctctcccacacctaaacttgaaccacgtaaaaaggtgacaacagag |
6398529 |
T |
|
| Q |
188 |
taaattaaaaaggatatatatcatcaccaacaagatattttgacagannnnnnn--------cttaaataaagttaaatccttatttat--gctagccaa |
277 |
Q |
| |
|
|||||| || |||| || |||||||| ||||| |||||||||||| | ||||||||||||||||||||||| ||| |||||| || |
|
|
| T |
6398528 |
taaattcaacaggaaatctatcatcatcaacatgatattttgacatatcaataattttttttcttaaataaagttaaatccttatatatatgctagctaa |
6398429 |
T |
|
| Q |
278 |
aacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaacttgtcaccatt-ttttatgaggaaaaacaaaaatt |
376 |
Q |
| |
|
|||| ||| ||||| | |||||||||| |||||| ||||||||| ||| |||||||||||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
6398428 |
aacagctggtgccaaaccgattggatttcctctagcgagattaacagcaatagaaaacaaacaacttttcaccattgttttactaggaaaaacaaaaatt |
6398329 |
T |
|
| Q |
377 |
gacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||| |
|
|
| T |
6398328 |
aacaaccaattagcaaggaaggcttcatgttcaatt |
6398293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 621 - 697
Target Start/End: Complemental strand, 6397919 - 6397843
Alignment:
| Q |
621 |
aaattgatccttgaaagaggtcaacctacaaataagaatgaaggtcacacttacccatcattatggatggatatgtt |
697 |
Q |
| |
|
||||||||||| |||||| |||| |||||||| |||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
6397919 |
aaattgatcctagaaagaaagcaacttacaaataggaatgaaggtcatgcttacatatcattatggatggatatgtt |
6397843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 242 - 349
Target Start/End: Original strand, 22651805 - 22651912
Alignment:
| Q |
242 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
341 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| ||| | |||||||| ||||||| ||||||||||| |||| ||| || |||||||||| |
|
|
| T |
22651805 |
cttaaacaaagttaaatccttatacatgctagccaaaacagctggtgcaaaagcaataggatttcctctagcaagatgaacagcaataggaaacaaacaa |
22651904 |
T |
|
| Q |
342 |
cttgtcac |
349 |
Q |
| |
|
||| |||| |
|
|
| T |
22651905 |
cttttcac |
22651912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 242 - 410
Target Start/End: Original strand, 22689567 - 22689739
Alignment:
| Q |
242 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
341 |
Q |
| |
|
|||||| ||| | |||||||||| |||||||||||||||| | | |||||||||| | ||| | |||||| |||| || | || || ||||||| || |
|
|
| T |
22689567 |
cttaaacaaactcaaatccttatatatgctagccaaaacagcaggtgccaaagcaatagtattgcctctagccagatgaatagaaatagtaaacaaagaa |
22689666 |
T |
|
| Q |
342 |
cttgtcacc---at-tttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaa |
410 |
Q |
| |
|
||| | ||| || |||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||| |
|
|
| T |
22689667 |
cttttgaccgacatatttttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaa |
22689739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 22652119 - 22652174
Alignment:
| Q |
357 |
tatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
22652119 |
tatgagcaaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatt |
22652174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 9815461 - 9815270
Alignment:
| Q |
29 |
gagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatggg-tgtggtt |
127 |
Q |
| |
|
||||||||||| | || |||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||| | ||| | |
|
|
| T |
9815461 |
gagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagggtctccgtgattgatcaacatgggttctggct |
9815362 |
T |
|
| Q |
128 |
gatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaaca |
219 |
Q |
| |
|
| | ||| ||||||||||| | ||||| || | |||| ||||| |||||| |||||||| || ||||||||| ||||| |||||||| |
|
|
| T |
9815361 |
gtaaattttggaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatctatcaccaccaaca |
9815270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 26354635 - 26354809
Alignment:
| Q |
46 |
aacattgtcaatttgcaaggcctgaaccttattcaacctaagtaataaagggtctatgtggttgatcaacatgggt-gtggttgatagtttgtgaacctc |
144 |
Q |
| |
|
|||||||||||||| |||||| || ||| ||| | | |||| |||||||||||| ||||||||||||||||| | ||||| | ||| |||||||| |
|
|
| T |
26354635 |
aacattgtcaattttcaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttgtaattttttgaacctc |
26354734 |
T |
|
| Q |
145 |
tcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaaaaggatatatatcatcaccaaca |
219 |
Q |
| |
|
|||| | ||||| || | |||| ||||| |||||| |||||||| || ||||||||| ||||| |||||||| |
|
|
| T |
26354735 |
tcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaaca |
26354809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 384
Target Start/End: Complemental strand, 9815240 - 9815097
Alignment:
| Q |
242 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
341 |
Q |
| |
|
|||||| ||| ||||||| |||| || ||||| |||||| ||| |||||||||| | ||||| ||||||||||| || | ||| |||||||||| || |
|
|
| T |
9815240 |
cttaaacaaacttaaatcgttataaatactagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaatagcaatagaaaacaaagaa |
9815141 |
T |
|
| Q |
342 |
cttgtcaccattt-tttatgaggaaaaacaaaaattgacaacca |
384 |
Q |
| |
|
||| |||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
9815140 |
cttttcaccaaagatttatgagttaaaacaaagattgacaacca |
9815097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 26354850 - 26354948
Alignment:
| Q |
253 |
ttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaacttgtcacca |
351 |
Q |
| |
|
|||||||||||| ||||||||| |||||| | | |||||||||| | ||||| ||||||||||| || | ||| || ||||||| ||||| |||||| |
|
|
| T |
26354850 |
ttaaatccttatatatgctagctaaaacagccggtgccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcacca |
26354948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 242 - 412
Target Start/End: Complemental strand, 1717417 - 1717246
Alignment:
| Q |
242 |
cttaaataaagttaaatccttatttatgctagccaaaacaactgccaccaaagcaattggatttcttctagcaagattaacaacaacagaaaacaaacaa |
341 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||||| | | |||||||||| ||||||| ||||||||||| |||| ||| || ||||||| | |
|
|
| T |
1717417 |
cttaaacaaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaataggatttcctctagcaagatgaacagcaataggaaacaaagat |
1717318 |
T |
|
| Q |
342 |
cttgtcacc-attttttatgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcttcatcttcaatt |
412 |
Q |
| |
|
|| ||||| | |||||||||||||||| ||| |||||||||||| ||| || ||||||| ||||||| |
|
|
| T |
1717317 |
tttttcaccaaagctttatgaggaaaaacataaaccgacaaccaagtagcaagaaatgcttcatgttcaatt |
1717246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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