View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2652_low_41 (Length: 292)

Name: NF2652_low_41
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2652_low_41
NF2652_low_41
[»] chr1 (2 HSPs)
chr1 (18-144)||(16001215-16001341)
chr1 (233-282)||(16001429-16001478)
[»] chr7 (2 HSPs)
chr7 (18-144)||(22348290-22348416)
chr7 (233-282)||(22348504-22348553)
[»] chr8 (1 HSPs)
chr8 (18-122)||(306313-306417)
[»] chr5 (2 HSPs)
chr5 (18-139)||(6837464-6837594)
chr5 (233-280)||(6837322-6837369)
[»] chr3 (2 HSPs)
chr3 (18-139)||(22598850-22598980)
chr3 (233-280)||(22599075-22599122)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 16001215 - 16001341
Alignment:
Q  18 tttctcatatattattttccatgcattttagaaattggacaagtcttgagtggagtggatgttggtcctgctgctggtgttgcacccgcaactaggctct 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||    
T  16001215 tttctcatatattgttttccatgcattttagaaattggacaagtcttgagtggagtagatgttggtcctgctactggtgttgcaccagcaactgggctct 16001314  T
Q  118 aattccattttatggtaaaaaacatta 144  Q
    |||||||||||||||||||||||||||    
T  16001315 aattccattttatggtaaaaaacatta 16001341  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 16001429 - 16001478
Alignment:
Q  233 gggatattttggagtcaaatgtgacttgtactacacagcacatgcctatg 282  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16001429 gggatattttggagtcaaatgtgacttgtactacagagcacatgcctatg 16001478  T

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Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 22348290 - 22348416
Alignment:
Q  18 tttctcatatattattttccatgcattttagaaattggacaagtcttgagtggagtggatgttggtcctgctgctggtgttgcacccgcaactaggctct 117  Q
    ||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | ||||    
T  22348290 tttctcatatattgtttgccatgcattttagaaattcgacaagtcttgagtggagtagatgttggtcctgctgctggtgttgcaccagcaactggactct 22348389  T
Q  118 aattccattttatggtaaaaaacatta 144  Q
    |||||||||| ||||||||||||||||    
T  22348390 aattccatttaatggtaaaaaacatta 22348416  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 22348504 - 22348553
Alignment:
Q  233 gggatattttggagtcaaatgtgacttgtactacacagcacatgcctatg 282  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||||    
T  22348504 gggatattttggagtcaaatgtgccttgtactacacaacacatgtctatg 22348553  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 306417 - 306313
Alignment:
Q  18 tttctcatatattattttccatgcattttagaaattggacaagtcttgagtggagtggatgttggtcctgctgctggtgttgcacccgcaactaggctct 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||    
T  306417 tttctcatatattgttttccatgcattttagaaattggacaagtcttgagtggagtagatgttgctcctgctgctggtgttgcaccagcaactgggctct 306318  T
Q  118 aattc 122  Q
     ||||    
T  306317 cattc 306313  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 6837594 - 6837464
Alignment:
Q  18 tttctcatatattattttccatgcattttagaaattggacaagtcttgagtggagtggatgttg---------gtcctgctgctggtgttgcacccgcaa 108  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  ||||||         |||||||||||||||||| ||| ||||    
T  6837594 tttctcatatattgtttgccatgcattttagaaattggacaagtcttgagtggagtacatgttggccctgctagtcctgctgctggtgttggaccagcaa 6837495  T
Q  109 ctaggctctaattccattttatggtaaaaaa 139  Q
    || || ||||||||||||| |||||||||||    
T  6837494 ctggggtctaattccatttaatggtaaaaaa 6837464  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 6837369 - 6837322
Alignment:
Q  233 gggatattttggagtcaaatgtgacttgtactacacagcacatgccta 280  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6837369 gggatattttgaagtcaaatgtgacttgtactacacagcacatgccta 6837322  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 22598850 - 22598980
Alignment:
Q  18 tttctcatatattattttccatgcattttagaaattggacaagtcttgagtggagtggatgttg---------gtcctgctgctggtgttgcacccgcaa 108  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||  ||||||         ||||||||| |||||||| ||| ||||    
T  22598850 tttctcatatattgtttgccatgcattttaaaaattggacaagtcttgagtggagtacatgttggccctgctagtcctgctgttggtgttggaccagcaa 22598949  T
Q  109 ctaggctctaattccattttatggtaaaaaa 139  Q
    || |||||||||||||||| |||||||||||    
T  22598950 ctgggctctaattccatttaatggtaaaaaa 22598980  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 22599075 - 22599122
Alignment:
Q  233 gggatattttggagtcaaatgtgacttgtactacacagcacatgccta 280  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22599075 gggatattttgaagtcaaatgtgacttgtactacacagcacatgccta 22599122  T

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