View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_42 (Length: 273)
Name: NF2652_low_42
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 16000966 - 16001141
Alignment:
| Q |
19 |
cttcggagagtgcatttagcacccagggaaggattttagacacatataggagctcattgagtctgaaaatggcggaagctttgatttgtactcagaattg |
118 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16000966 |
cttcggagagcgcatttagcacccggggaaggattttagacacatatagaagctcattgagtctggaaatggcggaagctttgatttgtactcagaattg |
16001065 |
T |
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| Q |
119 |
gctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttgggaaatgttgtggca |
194 |
Q |
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| T |
16001066 |
gctgaaaccatctttcgtcaacttcaaagatctaaatttgagtgaagagtatgagctgttggaaaatgttgtggca |
16001141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 17435863 - 17435826
Alignment:
| Q |
52 |
ttttagacacatataggagctcattgagtctgaaaatg |
89 |
Q |
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| T |
17435863 |
ttttagacacatataggagctcattgagttcgaaaatg |
17435826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 22598601 - 22598776
Alignment:
| Q |
19 |
cttcggagagtgcatttagcacccagggaaggattttagacacatataggagctcattgagtctgaaaatggcggaagctttgatttgtactcagaattg |
118 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
22598601 |
cttcggagagcgcatttagcaccggaggaaggattttagacacatataggagctcattgagtccggaaatggcggaagctttgatttgtactcagaattg |
22598700 |
T |
|
| Q |
119 |
gctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttgggaaatgttgtggca |
194 |
Q |
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| T |
22598701 |
gctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttggaaaatgttgtggca |
22598776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 6837843 - 6837668
Alignment:
| Q |
19 |
cttcggagagtgcatttagcacccagggaaggattttagacacatataggagctcattgagtctgaaaatggcggaagctttgatttgtactcagaattg |
118 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
6837843 |
cttcggagagcgcatttagcaccggaggaaggattttagacacatataggagctcattgagtccggaaatggcggaagctttgatttgtactcagaattg |
6837744 |
T |
|
| Q |
119 |
gctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttgggaaatgttgtggca |
194 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
6837743 |
gctgaaaccatcttttgtcgacttcaaagatctaaatttgagtgaagagtatgagttgttggaaaatgttgtggca |
6837668 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 22348047 - 22348216
Alignment:
| Q |
25 |
agagtgcatttagcacccagggaaggattttagacacatataggagctcattgagtctgaaaatggcggaagctttgatttgtactcagaattggctgaa |
124 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| ||||||||||| |
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| T |
22348047 |
agagcgcatttagcactgggggaaggattttagacacatatagaagctcattgagtccggaaatggcggaagctttgatttgtactcaaaattggctgaa |
22348146 |
T |
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| Q |
125 |
accatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttgggaaatgttgtggca |
194 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
22348147 |
accatctttcgtcgacttcaaagatctaaatttgagtgaagagtgtgagctgttggaaaatgttgtggca |
22348216 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 306650 - 306491
Alignment:
| Q |
19 |
cttcggagagtgcatttagcacccagggaaggattttagacacatataggagctcattgagtctgaaaatggcggaagctttgatttgtactcagaattg |
118 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||| | ||| ||||||||||||||| |
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| T |
306650 |
cttcggagagcgcatttagcaccgggggaaggattttagacccatataggagcccattgagttcggaaa----------------ttgtactcagaattg |
306567 |
T |
|
| Q |
119 |
gctgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaagagtatgagctgttgggaaatgttgtggca |
194 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
306566 |
gttgaaaccatctttcgtcgacttcaaagatctaaatttgagtgaaaagtatgagctgttgaaaaatgttgtggca |
306491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 13308429 - 13308547
Alignment:
| Q |
52 |
ttttagacacatataggagctcattgagtctgaaaatggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcgacttcaaagatct |
151 |
Q |
| |
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|||||||||||||||||||||| |||| || || |||||| ||||||||||| ||| ||| |||||||| ||||| |||||| | |||||||||||||| |
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| T |
13308429 |
ttttagacacatataggagctccttgaatccgacaatggctgaagctttgatatgttgtcaaaattggctaaaaccttctttcattgacttcaaagatct |
13308528 |
T |
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| Q |
152 |
aaatttgagtgaagagtat |
170 |
Q |
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|||||||||||||||||| |
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| T |
13308529 |
taatttgagtgaagagtat |
13308547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 14593140 - 14593017
Alignment:
| Q |
52 |
ttttagacacatataggagctcattgagtctgaaaatggcggaagctttgatttgtactcagaattggctgaaaccatctttcgtcgacttcaaagatct |
151 |
Q |
| |
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||||||||||||||||||| || ||||||| || |||||| ||||||||||| ||| ||| ||||| || ||||| | |||| | |||||||||||||| |
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| T |
14593140 |
ttttagacacatataggagttccttgagtccgacaatggctgaagctttgatatgttgtcaaaattgactaaaaccttttttcattgacttcaaagatct |
14593041 |
T |
|
| Q |
152 |
aaatttgagtgaagagtatgagct |
175 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
14593040 |
taatttgagtgaagagtatcagct |
14593017 |
T |
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