View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_48 (Length: 247)
Name: NF2652_low_48
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_48 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 69 - 247
Target Start/End: Complemental strand, 10367500 - 10367322
Alignment:
| Q |
69 |
ttatttgaaggattctctcagtggtaaggaaggaacttcaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaa |
168 |
Q |
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| T |
10367500 |
ttatttgaaggattctctcagtggtaaggaaggaactccaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaa |
10367401 |
T |
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| Q |
169 |
ttcaagaatgtcatcaggaagaagaaagagtccagactctacttcaacgcattccttagtgtagatttcatgcactttt |
247 |
Q |
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| T |
10367400 |
ttcaagaatgtcatcaggaagaagaaagagtccagactctacttcaacgcattcctttgtgtagatttcatgcactttt |
10367322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 10379076 - 10378862
Alignment:
| Q |
18 |
gtatgagagcaccaaagacaaacaacaatagattttggcatctagtatcctttatttgaaggattctctcagtggtaaggaaggaacttcaattcttgca |
117 |
Q |
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| T |
10379076 |
gtatgagagcaccaaacacaaacaaccatagattttggcatctagtatcctttatttgaaggattctctcggtagtaaggaaggaactccaattcttgca |
10378977 |
T |
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| Q |
118 |
aacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaattcaagaatgtcatcaggaagaagaaagagtccagactctacttcaacg |
217 |
Q |
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| T |
10378976 |
agcaagcctaacattcttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaagatttcggactgtacttcaaca |
10378877 |
T |
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| Q |
218 |
cattccttagtgtag |
232 |
Q |
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| T |
10378876 |
cattccttagtgtag |
10378862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 43657687 - 43657570
Alignment:
| Q |
98 |
aaggaacttcaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaattcaagaatgtcatcaggaagaagaaaga |
197 |
Q |
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| T |
43657687 |
aaggaactccattttttgcacacaagcctagcattatcgagactttcgcatgcaacacgatccaaacacatttcaagaataccatcgggaagaagaaaga |
43657588 |
T |
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| Q |
198 |
gtccagactctacttcaa |
215 |
Q |
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| T |
43657587 |
tttcggactttacttcaa |
43657570 |
T |
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