View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2652_low_5 (Length: 709)
Name: NF2652_low_5
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_5 |
 | |
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| [»] scaffold0642 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 260 - 688
Target Start/End: Original strand, 2303825 - 2304263
Alignment:
| Q |
260 |
aatcttttactggttttagattagagtgaatgaaggattgcaattatgcacctatatgattcaaatcggcatgtaatactcctatatatgattcaaattt |
359 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
2303825 |
aatcttttgctggttttagattagaatgaatgaaggattgcaattatgcacctatatgattcaaatcggcatgtaatactc--atatatgattcaaattt |
2303922 |
T |
|
| Q |
360 |
aaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaactttgaataatgacatccacttttactctgtttt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2303923 |
aaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaactttgaataatgacatccacttttactctgtttt |
2304022 |
T |
|
| Q |
460 |
atataatagttggtgggaagagaaaatatgtttgagttgtgatacttcatg----tcctattaagtcaaatgtgattatgagggattaaactctcgacct |
555 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2304023 |
atataatagttggtgggaagagaaaatatatttgagttgtgatacttcatgttaatcctattaagtcaaatgtgattatgagggactaaactctcgacct |
2304122 |
T |
|
| Q |
556 |
tcttcttaaactcatttaatgcctcaactctttaacgattggattacaccgttagagatagaatctttatttaacatgtgttgatttataa--------t |
647 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
2304123 |
ccttcttaaactcattcaatgcctcaactcattaacaattggattacaccgttagagatagaatctttatttaacatgtgttgatttataaatagtaatt |
2304222 |
T |
|
| Q |
648 |
tactcaacctccttcttatgctgattttttaaattccattt |
688 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2304223 |
tacttgacctccttcttatgctgattttttaaattccattt |
2304263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 2303464 - 2303573
Alignment:
| Q |
154 |
catccactgctaagagtcctaaaatgccatgtatcaagattgaagattcaaagtgattatggagcatgatttgacaatatcacttattatttcctgtctt |
253 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2303464 |
catccactactaagagtcctaaaatgccatttatcaagattgaagattcaaagtgattatggagcatgatttggcaatatcacttattattttctgtctt |
2303563 |
T |
|
| Q |
254 |
aaatggaatc |
263 |
Q |
| |
|
||||||||| |
|
|
| T |
2303564 |
caatggaatc |
2303573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 2303386 - 2303432
Alignment:
| Q |
113 |
caagaagtaaattagtgagaaaaagatctgccgaaagtttacatcca |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2303386 |
caagaagtaaattagtgagaaaaagatctgccgaaagtttgcatcca |
2303432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 327 - 552
Target Start/End: Complemental strand, 20911372 - 20911143
Alignment:
| Q |
327 |
ggcatgtaatactcctatatatgattcaaatttaaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaac |
426 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20911372 |
ggcatgtaatactcctgtat--gattcaaatttaaagatattacacaatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaac |
20911275 |
T |
|
| Q |
427 |
tttgaataatgacatccacttttactctgttttatataatagttg--gtgggaagagaaaatatgtttgagttgtgatacttcatg----tcctattaag |
520 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||| |||||||||||||| |||| | || ||||||| |
|
|
| T |
20911274 |
ttttaataatgacatccacttttactccgttatatataatagttggtgtgggaagagaaattatatttgagttgtgatatttcaagttaatcatattaag |
20911175 |
T |
|
| Q |
521 |
tcaaatgtgattatgagggattaaactctcga |
552 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
20911174 |
tcaaatgtgattaagagggattaaactctcga |
20911143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 327 - 552
Target Start/End: Complemental strand, 20925820 - 20925591
Alignment:
| Q |
327 |
ggcatgtaatactcctatatatgattcaaatttaaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaac |
426 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20925820 |
ggcatgtaatactcctgtat--gattcaaatttaaagatattacacaatagaaatatatatgacttatattatgttgatttaaatatcttggttcttaac |
20925723 |
T |
|
| Q |
427 |
tttgaataatgacatccacttttactctgttttatataatagttg--gtgggaagagaaaatatgtttgagttgtgatacttcatg----tcctattaag |
520 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||| |||||||||||||| |||| | || ||||||| |
|
|
| T |
20925722 |
ttttaataatgacatccacttttactccgttatatataatagttggtgtgggaagagaaattatatttgagttgtgatatttcaagttaatcatattaag |
20925623 |
T |
|
| Q |
521 |
tcaaatgtgattatgagggattaaactctcga |
552 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
20925622 |
tcaaatgtgattaagagggattaaactctcga |
20925591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 20913987 - 20913941
Alignment:
| Q |
267 |
tactggttttagattagagtgaatgaaggattgcaattatgcaccta |
313 |
Q |
| |
|
||||||||||| |||||| |||| |||||||| |||||||||||||| |
|
|
| T |
20913987 |
tactggttttatattagaatgaacgaaggattacaattatgcaccta |
20913941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 7e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 325 - 495
Target Start/End: Original strand, 6701586 - 6701752
Alignment:
| Q |
325 |
tcggcatgtaatactcctatatatgattcaaatttaaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttctta |
424 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6701586 |
tcggcatgtaatactcctata--tgattcaaatttaaagatattatatactagaaatatatatgacttatattatgttgatttaaatatgttggttctta |
6701683 |
T |
|
| Q |
425 |
actttgaataatgacatccacttttactctgttttatataatagttggtgggaagagaaaatatgtttgag |
495 |
Q |
| |
|
||||| ||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
6701684 |
acttttaataatgacatccacctttactccg--ttatataatagttggcaggaagagaaaatatatttgag |
6701752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 6699960 - 6700006
Alignment:
| Q |
267 |
tactggttttagattagagtgaatgaaggattgcaattatgcaccta |
313 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6699960 |
tactggttttagattagaatgaatgaaggcttgcaattatgcaccta |
6700006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 646
Target Start/End: Original strand, 8170714 - 8170821
Alignment:
| Q |
539 |
gattaaactctcgaccttcttcttaaactcatttaatgcctcaactctttaacgattggattacaccgttagagatagaatctttatttaacatgtgttg |
638 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||||||||||||| |||||| |||||||||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
8170714 |
gattaaactctggacctccttcttaaattcatttaatgcctcaaccctttaataattggattacgcagtcagagatagaatctttatttaacatgtgttg |
8170813 |
T |
|
| Q |
639 |
atttataa |
646 |
Q |
| |
|
|||||||| |
|
|
| T |
8170814 |
atttataa |
8170821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 8170525 - 8170575
Alignment:
| Q |
461 |
tataatagttggtgggaagagaaaatatgtttgagttgtgatacttcatgt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
8170525 |
tataatagttggtgggaagagaaaatatatttgagttttgatacttcatgt |
8170575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 30112114 - 30112061
Alignment:
| Q |
154 |
catccactgctaagagtcctaaaatgccatgtatcaagattgaagattcaaagt |
207 |
Q |
| |
|
|||||||| | |||||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
30112114 |
catccactccaaagagttctaaaatgtcatgcatcaagattgaagattcaaagt |
30112061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 6975 - 7047
Alignment:
| Q |
154 |
catccactgctaagagtcctaaaatgccatgtatcaagattgaagattcaaagtgattatggagcatgatttg |
226 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||| ||||||||||||||||| || | ||||||| ||||| |
|
|
| T |
6975 |
catccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttg |
7047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 16888 - 16960
Alignment:
| Q |
154 |
catccactgctaagagtcctaaaatgccatgtatcaagattgaagattcaaagtgattatggagcatgatttg |
226 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||| ||||||||||||||||| || | ||||||| ||||| |
|
|
| T |
16888 |
catccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttg |
16960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 22094 - 22022
Alignment:
| Q |
154 |
catccactgctaagagtcctaaaatgccatgtatcaagattgaagattcaaagtgattatggagcatgatttg |
226 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||| ||||||||||||||||| || | ||||||| ||||| |
|
|
| T |
22094 |
catccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttg |
22022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 50976 - 50904
Alignment:
| Q |
154 |
catccactgctaagagtcctaaaatgccatgtatcaagattgaagattcaaagtgattatggagcatgatttg |
226 |
Q |
| |
|
||||||| || |||| ||||||||||||||| |||| ||||||||||||||||| || | ||||||| ||||| |
|
|
| T |
50976 |
catccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttg |
50904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 44498592 - 44498664
Alignment:
| Q |
154 |
catccactgctaagagtcctaaaatgccatgtatcaagattgaagattcaaagtgattatggagcatgatttg |
226 |
Q |
| |
|
||||||| || |||| ||||||||||||||| |||| ||||||||||||||||| || | ||||||| ||||| |
|
|
| T |
44498592 |
catccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttg |
44498664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 1143562 - 1143635
Alignment:
| Q |
346 |
tatgattcaaatttaaagatattacataatagaaatatatatgacttatattatgttgatttaaatatcttggttc |
421 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | | ||| ||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
1143562 |
tatgattcaaatttgaagatattacataatagaa--acacatgtcttatcttatgatgattcaaatttcttggttc |
1143635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 3381204 - 3381257
Alignment:
| Q |
167 |
gagtcctaaaatgccatgtatcaagattgaagattcaaagtgattatggagcat |
220 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||| || | ||||||| |
|
|
| T |
3381204 |
gagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcat |
3381257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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