View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_52 (Length: 239)
Name: NF2652_low_52
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 42463120 - 42463276
Alignment:
| Q |
65 |
tggcttctatggctactacaggtgttatcaaagtaccacgctgttcttcttcatcatcaaatataagaaacaaagccattcaaagaagtctttcattctc |
164 |
Q |
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| T |
42463120 |
tggcttctatggctactacaggtgttatcaaagtaccacgttgttcttcttcatcatcaaatataagaaacaaagccattcaaagaagtctttcattctc |
42463219 |
T |
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| Q |
165 |
atcatcacaactctctggagacaagattgttacagtttctggtggtgcaggaagagg |
221 |
Q |
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| T |
42463220 |
atcatcacaactctctggagacaagattgttacagtttctggtggtgcaggaagagg |
42463276 |
T |
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