View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2652_low_57 (Length: 217)
Name: NF2652_low_57
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_57 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 47473380 - 47473176
Alignment:
| Q |
1 |
atagtcctcgtgtgcgtggtttctttgttggcagaggagttacggaaaatgtgcctactgttagctccctggtatag---catttcagaacttaaattat |
97 |
Q |
| |
|
||||||||| || ||||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47473380 |
atagtcctcttggtcgtggtttctttggtggcaaaggggttacggaaaatgtgcctgctgttagctccctggtatagtagcatttcagaacttaaattat |
47473281 |
T |
|
| Q |
98 |
atgtctgtttccgttgctttccatggaatggaactattactaagacatgctaatttatgtaattgatcaaatcttaatcatgtattaaatattggttggt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47473280 |
atgtctgtttccgttgctttccatggaattgaactattactaagacatgctaatttatgtaattgatcaaatcttaatcatgtattaaatattggttggt |
47473181 |
T |
|
| Q |
198 |
ttgtt |
202 |
Q |
| |
|
||||| |
|
|
| T |
47473180 |
ttgtt |
47473176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 47486094 - 47485994
Alignment:
| Q |
1 |
atagtcctcgtgtgcgtggtttctttgttggcagaggagttacggaaaatgtgcctactgttagctccctggtatagcatttcagaacttaaattatatg |
100 |
Q |
| |
|
||||||||| || ||||||||||||| ||||| |||||||||||||||||| | | ||||||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
47486094 |
atagtcctcttggtcgtggtttctttggtggcaaaggagttacggaaaatgtttcagcagttagctccctggtaaagcattttagcacttaaattatatg |
47485995 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
47485994 |
t |
47485994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 47485966 - 47485930
Alignment:
| Q |
159 |
attgatcaaatcttaatcatgtattaaatattggttg |
195 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47485966 |
attgatcaaatcttaatcatgaattaaatattggttg |
47485930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 24802576 - 24802533
Alignment:
| Q |
159 |
attgatcaaatcttaatcatgtattaaatattggttggtttgtt |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
24802576 |
attgatcaaatcttaatcatgaattaaatattgattgctttgtt |
24802533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 47476473 - 47476430
Alignment:
| Q |
159 |
attgatcaaatcttaatcatgtattaaatattggttggtttgtt |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
47476473 |
attgatcaaatcttaatcatgaattaaatattgattgctttgtt |
47476430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University