View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_6 (Length: 680)
Name: NF2652_low_6
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 48650692 - 48650345
Alignment:
| Q |
19 |
tagacaggagcagggtggtggtacatgattggcatcgcacccacaatagcctgcctcggcggcgggtacacgtagcccccacccattccatagctcagtt |
118 |
Q |
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| T |
48650692 |
tagacaggagcagggtggtggtacatgattggcatcgcacccacaatagcctgcctcggcggcgggtacacgtagcccccacccattccatagctcagtt |
48650593 |
T |
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| Q |
119 |
tctgctgcatttgtccaacaattttttcaaattaaaataaaaatattatttcttgttattgaattgggcatgcaatacgtaataaccacctgacctacct |
218 |
Q |
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| T |
48650592 |
tctgctgcattcgtccaacaattttttcaaataaaaataaaaatattatttcttgttattgaattgggcatgcaatacgtaataaccaccagacctacct |
48650493 |
T |
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| Q |
219 |
gattgtaattgtaattcatatgatctgttgcaatgtaggtgggcgtgtacctgaatgaatgagagaaagagattcattaaatcacattatatgcctcaac |
318 |
Q |
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| T |
48650492 |
gattgtaattgtaattcatatgatctgttgcaatgtaggtgggcgtgtacctgaatgaatgagagaaagagattcactaaatcacattatatgccaaaac |
48650393 |
T |
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| Q |
319 |
tcaacgcctattttttagaacaaaaagcaagaataaaatataatatat |
366 |
Q |
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| T |
48650392 |
tcaacgcctattttttagaacaaaaagcaagaataaaatataatatat |
48650345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 347 - 670
Target Start/End: Complemental strand, 48650269 - 48649946
Alignment:
| Q |
347 |
aagaataaaatataatatatatacccgtagaaaggaatggcgtgatgatgatggaatattgaggaaggaggggtaggtgttaccaccggataataccatt |
446 |
Q |
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| T |
48650269 |
aagaataaaatataatatatatacccgtagaaaggaagggcatgatgatgatggaatattgaggaaggaggtgtaggtgttaccaccggataataccatt |
48650170 |
T |
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| Q |
447 |
gaacctgctgctggtttctacggtggatattctttgttcctccttgtgtgtatggaannnnnnnnnnnnnnnnnnnnnnnntgatgggagaagaccttgg |
546 |
Q |
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| T |
48650169 |
gaacctgctgctgatttctacggtggatattctttgttcctccttgtgtgtatggaagaggaggaggagaaggaggaggagtgatgggagaagaccttgg |
48650070 |
T |
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| Q |
547 |
acgacgagcaccaagagaagcgatattgcagttggctcgtcgaccattgatgatcacagttggttcctcgcaagccttctttgcagcctctgcatctttg |
646 |
Q |
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| T |
48650069 |
acgacgagcaccaagagaagcgatattgcagttggctcgtcgaccattgatgatcacagttggttcctcgcaagccttctttgcagaatctgcatctttg |
48649970 |
T |
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| Q |
647 |
aatgttacaaatccataccctttg |
670 |
Q |
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| T |
48649969 |
aatgttacaaatccataccctttg |
48649946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 650
Target Start/End: Original strand, 41290736 - 41290796
Alignment:
| Q |
590 |
ccattgatgatcacagttggttcctcgcaagccttctttgcagcctctgcatctttgaatg |
650 |
Q |
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| T |
41290736 |
ccattgatgttcacacttggttcctcgcaagccttatttgctgcctctgcttccttgaatg |
41290796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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