View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_60 (Length: 214)
Name: NF2652_low_60
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 30325854 - 30325660
Alignment:
| Q |
1 |
tgttctagagatggaggaaaaggggaaagagagaggttaatggggttttctgggttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaag |
100 |
Q |
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| T |
30325854 |
tgttctagagatggagggaaaggggaaagagagaggttaatggggttttctgggttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaag |
30325755 |
T |
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| Q |
101 |
gggtgaagagaagtgggttgagagtggcattatgggaagaacatggtagtagggttggtctttcatcaaaaacgtagttgccaaagtgaagttgt |
195 |
Q |
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| T |
30325754 |
gggtgaagagaagtgggttgagagtggcattatgggaagaacatggtagtagggttggtctttcatcaaaaacgtagttgccaaagtgaagttgt |
30325660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 30337439 - 30337385
Alignment:
| Q |
53 |
ggttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaaggggtgaa |
107 |
Q |
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| T |
30337439 |
ggttgttgaagcattcacggaagatgagttttccaaggtagttgaaaggggtgaa |
30337385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 30333040 - 30332972
Alignment:
| Q |
54 |
gttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaaggggtgaagagaagtgggttgag |
122 |
Q |
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| T |
30333040 |
gttgttgaagcatttgtggaatgtgagtttgcggaggtagttgaaaggggttaagagtattgggttgag |
30332972 |
T |
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