View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2652_low_62 (Length: 204)

Name: NF2652_low_62
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2652_low_62
NF2652_low_62
[»] chr4 (57 HSPs)
chr4 (17-120)||(3253026-3253133)
chr4 (34-102)||(29005170-29005238)
chr4 (26-102)||(2832675-2832753)
chr4 (34-102)||(707601-707669)
chr4 (139-186)||(23095167-23095214)
chr4 (139-185)||(4440371-4440417)
chr4 (49-102)||(29005412-29005465)
chr4 (34-102)||(707356-707424)
chr4 (34-102)||(729191-729259)
chr4 (138-186)||(3252991-3253039)
chr4 (34-102)||(3732847-3732915)
chr4 (34-102)||(36310951-36311019)
chr4 (34-102)||(36325160-36325228)
chr4 (34-102)||(37065693-37065761)
chr4 (34-102)||(47526186-47526254)
chr4 (138-185)||(2832860-2832907)
chr4 (138-185)||(47526269-47526316)
chr4 (34-92)||(4439760-4439818)
chr4 (139-185)||(30260788-30260834)
chr4 (139-185)||(38054813-38054859)
chr4 (34-100)||(43319018-43319084)
chr4 (34-102)||(728947-729016)
chr4 (49-102)||(44519328-44519381)
chr4 (141-185)||(706935-706979)
chr4 (141-185)||(707188-707232)
chr4 (141-185)||(729385-729429)
chr4 (141-185)||(729638-729682)
chr4 (138-186)||(13861054-13861102)
chr4 (34-102)||(19730737-19730805)
chr4 (49-101)||(40695673-40695725)
chr4 (34-102)||(43318753-43318821)
chr4 (139-185)||(2832614-2832660)
chr4 (49-103)||(3729059-3729113)
chr4 (44-102)||(3735583-3735641)
chr4 (139-185)||(3735657-3735703)
chr4 (139-185)||(4440090-4440136)
chr4 (139-185)||(6201943-6201989)
chr4 (44-102)||(6202004-6202062)
chr4 (34-120)||(17260568-17260654)
chr4 (138-176)||(22630011-22630049)
chr4 (139-185)||(29005109-29005155)
chr4 (139-185)||(43318692-43318738)
chr4 (139-185)||(43318955-43319001)
chr4 (139-185)||(43456135-43456181)
chr4 (140-185)||(3729129-3729174)
chr4 (26-82)||(30260625-30260682)
chr4 (49-102)||(36311230-36311283)
chr4 (49-102)||(36311484-36311537)
chr4 (49-102)||(36325439-36325492)
chr4 (49-102)||(36325693-36325746)
chr4 (49-102)||(36898751-36898804)
chr4 (49-102)||(40959171-40959224)
chr4 (140-185)||(44519143-44519188)
chr4 (49-93)||(6202266-6202310)
chr4 (49-120)||(13860629-13860698)
chr4 (34-102)||(29004914-29004981)
chr4 (138-186)||(47526522-47526570)
[»] chr1 (39 HSPs)
chr1 (36-102)||(11932217-11932283)
chr1 (34-102)||(5943504-5943572)
chr1 (34-102)||(23730017-23730085)
chr1 (42-101)||(37691905-37691964)
chr1 (33-102)||(20581369-20581438)
chr1 (34-102)||(5297379-5297447)
chr1 (138-186)||(22867897-22867945)
chr1 (34-102)||(42736470-42736538)
chr1 (34-101)||(11931430-11931497)
chr1 (34-101)||(52348343-52348410)
chr1 (34-119)||(34609917-34610000)
chr1 (34-120)||(44949378-44949462)
chr1 (141-186)||(7846890-7846935)
chr1 (49-102)||(21443428-21443481)
chr1 (34-99)||(40374863-40374928)
chr1 (34-82)||(7112874-7112922)
chr1 (34-102)||(11931935-11932003)
chr1 (34-102)||(34748410-34748478)
chr1 (138-185)||(21443366-21443413)
chr1 (139-186)||(24228445-24228492)
chr1 (34-93)||(38143337-38143396)
chr1 (139-181)||(11931767-11931809)
chr1 (139-185)||(23730100-23730146)
chr1 (48-102)||(37692153-37692207)
chr1 (140-186)||(44949343-44949389)
chr1 (141-186)||(16166736-16166781)
chr1 (49-102)||(52348125-52348178)
chr1 (50-102)||(5297129-5297181)
chr1 (34-102)||(10787933-10788001)
chr1 (141-185)||(11932563-11932607)
chr1 (34-102)||(18146496-18146564)
chr1 (154-185)||(37691841-37691872)
chr1 (139-185)||(10788125-10788171)
chr1 (139-185)||(29019056-29019102)
chr1 (139-185)||(34748593-34748639)
chr1 (139-185)||(37692092-37692138)
chr1 (140-185)||(5297317-5297362)
chr1 (140-184)||(11922105-11922149)
chr1 (49-93)||(29068977-29069021)
[»] chr3 (41 HSPs)
chr3 (35-102)||(17475831-17475897)
chr3 (34-102)||(31731033-31731101)
chr3 (34-102)||(45878085-45878153)
chr3 (140-186)||(13844651-13844697)
chr3 (140-185)||(34947560-34947605)
chr3 (37-102)||(40319442-40319507)
chr3 (49-102)||(45878591-45878644)
chr3 (26-102)||(17663040-17663116)
chr3 (34-102)||(36632450-36632518)
chr3 (34-102)||(36661615-36661683)
chr3 (34-102)||(37041420-37041488)
chr3 (35-103)||(37041665-37041733)
chr3 (34-102)||(42934279-42934347)
chr3 (34-102)||(45698926-45698994)
chr3 (34-98)||(45877138-45877202)
chr3 (34-102)||(45878838-45878906)
chr3 (139-185)||(3696555-3696601)
chr3 (139-185)||(37041504-37041550)
chr3 (34-92)||(45876635-45876693)
chr3 (42-120)||(52106924-52107005)
chr3 (139-184)||(25704189-25704234)
chr3 (141-186)||(29557041-29557086)
chr3 (34-102)||(25704022-25704090)
chr3 (34-102)||(45877826-45877894)
chr3 (34-102)||(45878344-45878412)
chr3 (34-120)||(3696589-3696676)
chr3 (138-185)||(9588051-9588098)
chr3 (138-185)||(40319522-40319569)
chr3 (139-185)||(42934184-42934230)
chr3 (139-185)||(43512590-43512636)
chr3 (139-185)||(45876827-45876873)
chr3 (37-102)||(40319193-40319258)
chr3 (139-184)||(45878284-45878329)
chr3 (140-184)||(19242780-19242824)
chr3 (141-185)||(40319275-40319319)
chr3 (34-102)||(42934101-42934169)
chr3 (42-102)||(43512651-43512711)
chr3 (153-185)||(45877073-45877105)
chr3 (153-185)||(45877765-45877797)
chr3 (153-185)||(45878530-45878562)
chr3 (54-117)||(46483043-46483104)
[»] scaffold0004 (1 HSPs)
scaffold0004 (42-100)||(217249-217307)
[»] chr7 (31 HSPs)
chr7 (34-102)||(47396178-47396246)
chr7 (140-186)||(17076523-17076569)
chr7 (34-103)||(39778516-39778585)
chr7 (34-102)||(34951676-34951744)
chr7 (49-115)||(44155801-44155867)
chr7 (49-102)||(6496297-6496350)
chr7 (34-102)||(14102670-14102739)
chr7 (34-102)||(14412687-14412756)
chr7 (49-102)||(32984618-32984671)
chr7 (34-102)||(576696-576764)
chr7 (34-102)||(19924948-19925016)
chr7 (42-102)||(31580526-31580586)
chr7 (34-102)||(39012658-39012726)
chr7 (138-185)||(31580193-31580240)
chr7 (138-185)||(32984685-32984732)
chr7 (139-185)||(31580465-31580511)
chr7 (139-185)||(39580963-39581009)
chr7 (139-185)||(39957303-39957349)
chr7 (140-185)||(39957552-39957597)
chr7 (34-102)||(39957364-39957432)
chr7 (139-185)||(576890-576936)
chr7 (139-185)||(14102754-14102800)
chr7 (139-185)||(14412771-14412817)
chr7 (139-185)||(47396261-47396307)
chr7 (139-185)||(48104448-48104494)
chr7 (141-186)||(20420670-20420715)
chr7 (139-184)||(39778599-39778644)
chr7 (34-102)||(576951-577019)
chr7 (34-82)||(14104074-14104122)
chr7 (34-82)||(14414091-14414139)
chr7 (140-184)||(39012822-39012866)
[»] chr6 (9 HSPs)
chr6 (34-102)||(8888287-8888355)
chr6 (34-93)||(361987-362046)
chr6 (34-102)||(8888056-8888124)
chr6 (138-185)||(8888475-8888522)
chr6 (139-185)||(8887994-8888040)
chr6 (139-185)||(8888226-8888272)
chr6 (49-93)||(18085793-18085837)
chr6 (141-186)||(361914-361959)
chr6 (49-102)||(8888536-8888589)
[»] chr8 (19 HSPs)
chr8 (34-101)||(24982806-24982873)
chr8 (34-102)||(24982625-24982693)
chr8 (51-102)||(16680699-16680750)
chr8 (34-102)||(24983055-24983123)
chr8 (139-185)||(18308119-18308165)
chr8 (139-185)||(39028089-39028135)
chr8 (139-185)||(42708998-42709044)
chr8 (49-102)||(5423794-5423847)
chr8 (49-102)||(8388358-8388411)
chr8 (140-185)||(24982709-24982754)
chr8 (141-186)||(40940431-40940476)
chr8 (34-102)||(18308180-18308248)
chr8 (34-93)||(18307938-18307997)
chr8 (34-101)||(42704869-42704936)
chr8 (139-184)||(4018519-4018564)
chr8 (142-186)||(5423864-5423908)
chr8 (49-93)||(33021781-33021825)
chr8 (49-93)||(38072046-38072090)
chr8 (34-102)||(41529384-41529451)
[»] chr5 (40 HSPs)
chr5 (34-113)||(292930-293010)
chr5 (34-102)||(29240854-29240922)
chr5 (50-102)||(33052437-33052489)
chr5 (34-102)||(36245819-36245887)
chr5 (33-102)||(292657-292726)
chr5 (140-185)||(7783235-7783280)
chr5 (49-102)||(26591945-26591998)
chr5 (34-103)||(35169123-35169192)
chr5 (34-102)||(7783446-7783514)
chr5 (34-102)||(19263436-19263503)
chr5 (34-102)||(26592177-26592245)
chr5 (34-102)||(33052673-33052741)
chr5 (34-102)||(40415325-40415393)
chr5 (34-102)||(40506543-40506611)
chr5 (139-186)||(40415408-40415455)
chr5 (139-185)||(788644-788690)
chr5 (139-185)||(7782737-7782783)
chr5 (139-185)||(16467177-16467223)
chr5 (140-186)||(38184558-38184604)
chr5 (140-186)||(38213753-38213799)
chr5 (32-92)||(42800880-42800941)
chr5 (34-102)||(788561-788629)
chr5 (34-102)||(15387292-15387360)
chr5 (34-102)||(28610065-28610133)
chr5 (60-115)||(40506345-40506400)
chr5 (139-185)||(7783771-7783817)
chr5 (139-185)||(29240937-29240983)
chr5 (139-185)||(33052756-33052802)
chr5 (139-185)||(35168955-35169001)
chr5 (34-91)||(7782907-7782964)
chr5 (36-101)||(7783691-7783756)
chr5 (140-185)||(7784030-7784075)
chr5 (140-185)||(35169208-35169253)
chr5 (140-185)||(40506627-40506672)
chr5 (140-185)||(41482502-41482547)
chr5 (153-185)||(293019-293051)
chr5 (138-186)||(30627286-30627334)
chr5 (34-82)||(35168872-35168920)
chr5 (34-102)||(38184619-38184687)
chr5 (34-102)||(38213670-38213738)
[»] chr2 (10 HSPs)
chr2 (34-102)||(23865864-23865932)
chr2 (140-186)||(25853691-25853737)
chr2 (43-101)||(4232610-4232668)
chr2 (140-185)||(44719880-44719925)
chr2 (138-185)||(23865803-23865850)
chr2 (138-185)||(43842626-43842673)
chr2 (138-185)||(44196700-44196747)
chr2 (139-185)||(4232445-4232491)
chr2 (139-185)||(37200493-37200539)
chr2 (34-102)||(9261306-9261374)
[»] scaffold0006 (3 HSPs)
scaffold0006 (34-102)||(120584-120652)
scaffold0006 (139-185)||(120523-120569)
scaffold0006 (34-99)||(120842-120906)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 3253133 - 3253026
Alignment:
Q  17 attgctcacatcaatcaatatatata----gtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttttaaaatcaata 112  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3253133 attgctcacatcaatcaatatatatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttttaaaatcaata 3253034  T
Q  113 ttttattt 120  Q
    ||||||||    
T  3253033 ttttattt 3253026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 29005238 - 29005170
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  29005238 atatataaagtcagattttttatgtcacgtgtcactttcacgtttattcgcaatattttttttattttt 29005170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 2832753 - 2832675
Alignment:
Q  26 atcaatcaatatatata--gtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||||||||||||||  |||| |||||||||| |||||||||||| |||||||||||  ||||||||| ||||||||    
T  2832753 atcaatcaatatatataaagtaaaattttttatgccacgtatcacttccacgtttattcgcaatatttttattattttt 2832675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 707601 - 707669
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| |||||| |||||||||||  ||||||||| ||||||||    
T  707601 atatataaagtaaggttttttatgtcacgtgtcacttccacgtttattcgcaatatttttattattttt 707669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 23095167 - 23095214
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  23095167 caatattttatttggcataaatatctcaacaaacttttgatcttatcc 23095214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 4440371 - 4440417
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  4440371 caatattttatttggcataaatatctcaacaaacttttgatcttatc 4440417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 29005465 - 29005412
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||| ||||||||    
T  29005465 ttttttatgtcacgtgtcactttcacgttaattcataatatttttattattttt 29005412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 707356 - 707424
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||| ||||||||||||| | |||| |||||||||||  ||||||||| ||||||||    
T  707356 atatataaagtaagatcttttatgtcacgtgtaacttccacgtttattcgcaatatttttattattttt 707424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 729259 - 729191
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||| ||||||||||||| | |||| |||||||||||  ||||||||| ||||||||    
T  729259 atatataaagtaagatcttttatgtcacgtgtaacttccacgtttattcgcaatatttttattattttt 729191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 3253039 - 3252991
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  3253039 tcaatattttattttgtataaatatctcaacaaacttttaatcttatcc 3252991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 3732847 - 3732915
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||||||||||  ||||| |||||||||| |||||||  ||||||||| ||||||||    
T  3732847 atatataaagtaagattttttattgcacgtgtcactttcacctttattcgcaatatttttattattttt 3732915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 36310951 - 36311019
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| ||||| |  ||| |||||||||||||||||||||| ||||||||    
T  36310951 atatataaagtaaggttttttatgccacgtgttgcttccacgtttattcttaatatttttattattttt 36311019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 36325160 - 36325228
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| ||||| |  ||| |||||||||||||||||||||| ||||||||    
T  36325160 atatataaagtaaggttttttatgccacgtgttgcttccacgtttattcttaatatttttattattttt 36325228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 37065693 - 37065761
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||||||||||| ||| |||| |||  |||||||||||||||| |||| ||||||||    
T  37065693 atatataaagtaagattttttatgccacttatcgcttctacgtttattcttaataattttattattttt 37065761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 47526186 - 47526254
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| | |||||||||||||| ||||| |||||| |||||||||||  ||||||||| ||||||||    
T  47526186 atatataaaataagattttttatgccacgtgtcacttccacgtttattcgcaatatttttattattttt 47526254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 2832907 - 2832860
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  2832907 tcaatatttgatttggcataaatatctcaacaaacttttgatcttatc 2832860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 47526269 - 47526316
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  47526269 tcaatatttaatttggcataaatatctcaacaaacttttgatcttatc 47526316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 4439760 - 4439818
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttt 92  Q
    ||||||| |||||| ||||||||||||||| |||||| |||||||||||  ||||||||    
T  4439760 atatataaagtaaggttttttatgtcacgtgtcacttccacgtttattcgcaatatttt 4439818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 30260834 - 30260788
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  30260834 caatatttaatttggcataaatatctcaacaaacttttgatcttatc 30260788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 38054813 - 38054859
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  38054813 caatatttgatttggcataaatatctcaacaaacttttgatcttatc 38054859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 43319084 - 43319018
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattt 100  Q
    ||||||| |||||||||||||||| ||| | |||||||||||||||||   ||||||||| ||||||    
T  43319084 atatataaagtaagattttttatgacacatgtcactttcacgtttatttgcaatatttttattattt 43319018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 729016 - 728947
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattc-ttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| |||||| |||||||||||   ||||||||| ||||||||    
T  729016 atatataaagtaaggttttttatgtcacgtgtcacttccacgtttattcgcgaatatttttattattttt 728947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 44519328 - 44519381
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||||    
T  44519328 ttttttatgccacgtgtcactttcacgtttattcgcaatatttttattattttt 44519381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 706935 - 706979
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||| |||| ||||||||||||||| |||||||||||||||||    
T  706935 atatttgatttggcataaatatctcaacaaacttttgatcttatc 706979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 707188 - 707232
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||    
T  707188 atatttgattttgcataaacatctcaacaaacttttgatcttatc 707232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 729429 - 729385
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||    
T  729429 atatttgattttgcataaacatctcaacaaacttttgatcttatc 729385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 729682 - 729638
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||| |||| ||||||||||||||| |||||||||||||||||    
T  729682 atatttgatttggcataaatatctcaacaaacttttgatcttatc 729638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 13861054 - 13861102
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||||| ||| |||||| |||| ||||||||||||||||||    
T  13861054 tcaatattttatttggcaaaaatatttcaacaaacttttgatcttatcc 13861102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 19730805 - 19730737
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||||||||||| ||| | || ||| |||||||||| ||||||||||| ||| ||||    
T  19730805 atatataaagtaagattttttatgccacatgtcgcttccacgtttatttttaatatttttattactttt 19730737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 40695673 - 40695725
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttt 101  Q
    ||||||| | ||||| ||||||||||||||||||| ||||||||| |||||||    
T  40695673 ttttttaggccacgtgtcactttcacgtttattctcaatatttttattatttt 40695725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 43318821 - 43318753
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||  ||||||||||||||| |||||||||  |||||||  ||||||||| ||||||||    
T  43318821 atatataaagtaatgttttttatgtcacgtgtcactttcatatttattcgcaatatttttattattttt 43318753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 2832660 - 2832614
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| |||||||||||| || |||||||||||||||||    
T  2832660 caatatttgatttggcataaatatcttaacaaacttttgatcttatc 2832614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 3729059 - 3729113
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttta 103  Q
    ||||||||| || || ||||||||||||||||||  ||||||||| |||||||||    
T  3729059 ttttttatgccatgtgtcactttcacgtttattcgcaatatttttattattttta 3729113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 3735583 - 3735641
Alignment:
Q  44 taagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||| ||||||||| ||||| |||||| |||||||||||  ||||||||| ||||||||    
T  3735583 taaggttttttatgccacgtgtcacttccacgtttattcgcaatatttttattattttt 3735641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 3735657 - 3735703
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||    
T  3735657 caatatttaatttgacataaatatctcaacaaacttttgatcttatc 3735703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 4440090 - 4440136
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||    
T  4440090 caatatttgatttgacataaatatctcaacaaacttttgatcttatc 4440136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 6201989 - 6201943
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||    
T  6201989 caatatttaatttgacataaatatctcaacaaacttttgatcttatc 6201943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 6202062 - 6202004
Alignment:
Q  44 taagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||| ||||||||||||||| |||||||||| ||||||   ||||||||| ||||||||    
T  6202062 taaggttttttatgtcacgtgtcactttcacttttatttgcaatatttttcttattttt 6202004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 17260654 - 17260568
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttttaaaatcaatattttattt 120  Q
    ||||||| |||||| ||||||||||||| | ||  || ||  |||||||||||||||||| |  |||||||||  ||||||||||||    
T  17260654 atatataaagtaaggttttttatgtcacatgtcgtttccatatttattcttaatatttttttattttttaaaactaatattttattt 17260568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 22630011 - 22630049
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaactttt 176  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  22630011 tcaatattttatttggcataaatatctcaacaaactttt 22630049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 29005155 - 29005109
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||    
T  29005155 caatatttaatttgacataaatatctcaacaaacttttgatcttatc 29005109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 43318738 - 43318692
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| | || ||||||||||||||| |||||||||||||||||    
T  43318738 caatatttgaattggcataaatatctcaacaaacttttgatcttatc 43318692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 43319001 - 43318955
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| | || ||||||||||||||| |||||||||||||||||    
T  43319001 caatatttgaattggcataaatatctcaacaaacttttgatcttatc 43318955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 43456181 - 43456135
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||||||| | || |||||||||| |||||||||||||||||    
T  43456181 caatattttatttggaatgaatatctcaacaaacttttgatcttatc 43456135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 3729129 - 3729174
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||| |||| ||||||||||||||| |||| ||||||||||||    
T  3729129 aatatttgatttggcataaatatctcaacaaacatttgatcttatc 3729174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 30260682 - 30260625
Alignment:
Q  26 atcaatcaata-tatatagtaagattttttatgtcacgtatcactttcacgtttattc 82  Q
    ||||||||||| |||| |||||| ||||||||| ||||| |||||| |||||||||||    
T  30260682 atcaatcaatagtataaagtaaggttttttatgccacgtgtcacttccacgtttattc 30260625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 36311230 - 36311283
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||| ||||| |||||||||||| |||||  ||||||||| ||||||||    
T  36311230 ttttttatgccacgtgtcactttcacgtatattcgcaatatttttattattttt 36311283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 36311484 - 36311537
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||| || || ||||||||||||||||||  ||||||||| ||||||||    
T  36311484 ttttttatgccatgtgtcactttcacgtttattcgcaatatttttattattttt 36311537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 36325439 - 36325492
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||| ||||| |||||||||||| |||||  ||||||||| ||||||||    
T  36325439 ttttttatgccacgtgtcactttcacgtatattcgcaatatttttattattttt 36325492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 36325693 - 36325746
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||| || || ||||||||||||||||||  ||||||||| ||||||||    
T  36325693 ttttttatgccatgtgtcactttcacgtttattcgcaatatttttattattttt 36325746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 36898804 - 36898751
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||| ||||| ||| ||||||||||||||  ||||||||| ||||||||    
T  36898804 ttttttatgccacgtgtcattttcacgtttattcgcaatatttttattattttt 36898751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 40959224 - 40959171
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||| ||| | |||||| |||||||||||| ||||||||| ||||||||    
T  40959224 ttttttatgccacatgtcacttccacgtttattctcaatatttttattattttt 40959171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 44519143 - 44519188
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||| || |||||||||||| || |||||||||||||||||    
T  44519143 aatattttaattggcataaatatcttaacaaacttttgatcttatc 44519188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 6202310 - 6202266
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatattttt 93  Q
    ||||||||||||||| |||||| |||||||||||  |||||||||    
T  6202310 ttttttatgtcacgtgtcacttccacgtttattcgcaatattttt 6202266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 13860629 - 13860698
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttttaaaatcaatattttattt 120  Q
    ||||||||| ||| | |||||| ||| || ||||| ||||||||| ||  ||||||||||||||||||||||    
T  13860629 ttttttatgccacatgtcacttccacattcattctcaatatttttatt--ttttaaaatcaatattttattt 13860698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 29004981 - 29004914
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| |||||  || ||||||||||||||  ||||||||| ||||||||    
T  29004981 atatataaagtaaggttttttatgccacgtg-caatttcacgtttattcgcaatatttttattattttt 29004914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 47526522 - 47526570
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    ||||||||| |||| | ||||||| ||||| ||||||||||||||||||    
T  47526522 tcaatatttgatttggaataaataactcaacaaacttttgatcttatcc 47526570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 11932217 - 11932283
Alignment:
Q  36 atatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||    
T  11932217 atataaagtaagattttttatgtcacgtgtcactttcacgtttattcgtaatatttttattattttt 11932283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 5943572 - 5943504
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  5943572 atatataaagtaaggttttttatgtcacgtgtcactttcacgtttattcgcaatatttttattattttt 5943504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 23730017 - 23730085
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  23730017 atatataaagtaaggttttttatgtcacgtgtcactttcacgtttattcacaatatttttattattttt 23730085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 37691964 - 37691905
Alignment:
Q  42 agtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttt 101  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||    
T  37691964 agtaagattttttatgtcacgtgtcactttcacgtttattcgcaatatttttattatttt 37691905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 20581369 - 20581438
Alignment:
Q  33 aatatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||||| |||||| ||||||| ||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  20581369 aatatataaagtaaggttttttaagtcacgtgtcactttcacgtttattcgcaatatttttattattttt 20581438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 5297447 - 5297379
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| | |||| ||||||||||||||||||| ||||||||||||||  ||||||||| ||||||||    
T  5297447 atatataaattaaggttttttatgtcacgtatcaatttcacgtttattcgcaatatttttattattttt 5297379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 22867945 - 22867897
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  22867945 tcaatatttaatttggcataaatatctcaataaacttttgatcttatcc 22867897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 42736470 - 42736538
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||   ||||||||| ||||||||    
T  42736470 atatataaagtaaggttttttatgtcacgtgtcactttcacgtttatttgcaatatttttattattttt 42736538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 11931430 - 11931497
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttt 101  Q
    ||||||| |||||| |||||||||  |||| ||||||||||||||||||| ||||||||| |||||||    
T  11931430 atatataaagtaaggttttttatgctacgtgtcactttcacgtttattctcaatatttttattatttt 11931497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 52348343 - 52348410
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttt 101  Q
    ||||||| |||||| | ||||||||||||| |||||| ||||||||||| |||||||||| |||||||    
T  52348343 atatataaagtaaggtgttttatgtcacgtgtcacttccacgtttattcgtaatatttttattatttt 52348410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 34610000 - 34609917
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttttaaaatcaatattttatt 119  Q
    ||||||| | |||| ||||||||||||||| |||||| |||||||||||| ||||||||| |  ||||| |||||| |||||||||    
T  34610000 atatataaaataaggttttttatgtcacgtgtcacttccacgtttattctcaatatttttat--tttttcaaatcattattttatt 34609917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 44949462 - 44949378
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttttaaaatcaatattttattt 120  Q
    ||||||| |||||| ||||||||||||| | |||||| |||||||||||| ||||||||| ||| ||||||||  ||||||||||||    
T  44949462 atatataaagtaaggttttttatgtcacatgtcacttccacgtttattctcaatattttt-tta-ttttaaaactaatattttattt 44949378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 7846935 - 7846890
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  7846935 atattttatttgacataaatatctcaataaacttttgatcttatcc 7846890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 21443481 - 21443428
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  21443481 ttttttatgtcacgtgtcactttcacgtttattcgcaatatttttattattttt 21443428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 40374863 - 40374928
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatt 99  Q
    ||||||| | |||| ||||||||| ||||| |||||||||||||||||| |||||||||| |||||    
T  40374863 atatataaattaaggttttttatgccacgtgtcactttcacgtttattcgtaatatttttattatt 40374928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 7112922 - 7112874
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattc 82  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||||||||    
T  7112922 atatataaagtaagattttttatgtcacatatcacttttacgtttattc 7112874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 11931935 - 11932003
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| ||||| ||| ||||||||||||||  ||||||||| ||||||||    
T  11931935 atatataaagtaaggttttttatgacacgtgtcattttcacgtttattcacaatatttttattattttt 11932003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 34748478 - 34748410
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||| |||   ||||||||| ||||||||    
T  34748478 atatataaagtaaggttttttatgccacgtatcactttcacgttcatttgcaatatttttattattttt 34748410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 21443413 - 21443366
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  21443413 tcaatatttaatttggcataaatatctcaacaaacttttgatcttatc 21443366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 24228445 - 24228492
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||    
T  24228445 caatattttatttgacataaatatctcaacaaacttttgatcttatcc 24228492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 38143337 - 38143396
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatattttt 93  Q
    ||||||| |||||  ||||| ||||||||| |||||| ||||||||||||||||||||||    
T  38143337 atatataaagtaatgtttttgatgtcacgtgtcacttccacgtttattcttaatattttt 38143396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 11931767 - 11931809
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatct 181  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  11931767 caatattttatttggcataaatatctcaacaaacttttgatct 11931809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 23730100 - 23730146
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  23730100 caatatttgatttcgcataaatatctcaacaaacttttgatcttatc 23730146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 37692207 - 37692153
Alignment:
Q  48 attttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||||||||||||| ||| ||||||||||||||  ||||||||| ||||||||    
T  37692207 attttttatgtcacgtgtcagtttcacgtttattcgcaatatttttattattttt 37692153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 44949389 - 44949343
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  44949389 aatattttatttggcataaatatctcaacaaactattgatcttatcc 44949343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 16166781 - 16166736
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||    
T  16166781 atattttatttgacataaatatctcaacaaacttttgatcttatcc 16166736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 52348125 - 52348178
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||||||| |||||| |||||||||||  ||||||||| ||||||||    
T  52348125 ttttttatgtcacgtgtcacttccacgtttattcgcaatatttttattattttt 52348178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 5297181 - 5297129
Alignment:
Q  50 tttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||||| ||||| |||||||||||||||||| || ||||||| ||||||||    
T  5297181 tttttatgccacgtgtcactttcacgtttattcgtattatttttattattttt 5297129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 10788001 - 10787933
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| ||||| | |||||||||||||| |  ||||||||| ||||||||    
T  10788001 atatataaagtaaggttttttatgccacgtgtaactttcacgtttatacgcaatatttttattattttt 10787933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 11932563 - 11932607
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||| |||| ||||||||||||||| |||||||||||||||||    
T  11932563 atatttaatttggcataaatatctcaacaaacttttgatcttatc 11932607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 18146496 - 18146564
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||| | || |||  ||||||||||| ||||||||| ||||||||    
T  18146496 atatataaagtaaggttttttatgtcacatgtcgcttctacgtttattctcaatatttttattattttt 18146564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 185
Target Start/End: Complemental strand, 37691872 - 37691841
Alignment:
Q  154 cataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||||||||||||||||||||||||||    
T  37691872 cataaatatctcaataaacttttgatcttatc 37691841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 10788171 - 10788125
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||    
T  10788171 caatatttaatttgacataaatatctcaacaaacttttgatcttatc 10788125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 29019056 - 29019102
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||    
T  29019056 caatatttgatttgacataaatatctcaacaaacttttgatcttatc 29019102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 34748639 - 34748593
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| | || ||||||||||||||| |||||||||||||||||    
T  34748639 caatatttgaattggcataaatatctcaacaaacttttgatcttatc 34748593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 37692138 - 37692092
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| | |||||||||||||||||| ||||||||||| |||||    
T  37692138 caatatttaaatttgcataaatatctcaacaaacttttgattttatc 37692092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 5297362 - 5297317
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||| |||| |||||||||||| || |||||||||||||||||    
T  5297362 aatatttaatttagcataaatatcttaacaaacttttgatcttatc 5297317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 11922149 - 11922105
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttat 184  Q
    ||||||| ||||  |||||||||||||| ||||||||||||||||    
T  11922149 aatatttgatttgacataaatatctcaacaaacttttgatcttat 11922105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 29069021 - 29068977
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatattttt 93  Q
    ||||||||||||| |||| |||||| ||||||||| |||||||||    
T  29069021 ttttttatgtcacatatcgctttcatgtttattctcaatattttt 29068977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 17475831 - 17475897
Alignment:
Q  35 tatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  17475831 tatatatattaagattttttatgtcacgtatcactttcacgtttattcgcaatattttt-ttattttt 17475897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 31731033 - 31731101
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| ||||| ||||||||||||||||||  ||||||||| ||||||||    
T  31731033 atatataaagtaaggttttttatgccacgtgtcactttcacgtttattcgcaatatttttattattttt 31731101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 45878153 - 45878085
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| |||||||| |||||||||  ||||||||| ||||||||    
T  45878153 atatataaagtaaggttttttatgtcacgtgtcactttcgcgtttattcgcaatatttttattattttt 45878085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 13844651 - 13844697
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  13844651 aatattttatttcgcataaatatctcaacaaacttttgatcttatcc 13844697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 34947560 - 34947605
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||    
T  34947560 aatattttatttggcataaatatctcaataaactttttatcttatc 34947605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 40319442 - 40319507
Alignment:
Q  37 tatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||| |||||| ||||||||||||||| |||||||||||||||||   ||||||||| ||||||||    
T  40319442 tataaagtaaggttttttatgtcacgtgtcactttcacgtttatttgcaatatttttattattttt 40319507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 45878644 - 45878591
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  45878644 ttttttatgtcacgtgtcactttcacgtttattcgcaatatttttattattttt 45878591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 17663116 - 17663040
Alignment:
Q  26 atcaatcaatatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||||||||||||||||||| ||||||||| ||| | || ||| ||  |||||||| ||||||||| ||||||||    
T  17663116 atcaatcaatatatatagtaaggttttttatgccacatgtcgcttccatatttattctcaatatttttattattttt 17663040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 36632450 - 36632518
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| |||||| |||||||| |||||| |||||||||||  ||||||||| ||||||||    
T  36632450 atatataaagtaaggttttttgtgtcacgtgtcacttccacgtttattcgcaatatttttattattttt 36632518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 36661683 - 36661615
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||  ||||||||||||||| || |||||||||||||||| ||||||||  ||||||||    
T  36661683 atatataaagtaaagttttttatgtcacgtgtcgctttcacgtttattctaaatattttaattattttt 36661615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 37041420 - 37041488
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||||||||||| ||||| |||||| |||||||||||  ||||||||| || |||||    
T  37041420 atatataaagtaagattttttatgacacgtgtcacttccacgtttattcgcaatatttttatttttttt 37041488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 37041665 - 37041733
Alignment:
Q  35 tatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttta 103  Q
    ||||||||||||| ||| ||||| ||||| ||||||||| ||||||||  ||||||||| |||||||||    
T  37041665 tatatatagtaaggtttcttatgccacgtgtcactttcatgtttattcgcaatatttttattattttta 37041733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 42934279 - 42934347
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| |||||||||  |||| ||||||||||||||||||  ||||||||| ||||||||    
T  42934279 atatataaagtaaggttttttatgctacgtgtcactttcacgtttattcgcaatatttttattattttt 42934347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 45698994 - 45698926
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| ||||| ||||||||||||| ||||  ||||||||| ||||||||    
T  45698994 atatataaagtaaggttttttatgccacgtgtcactttcacgttcattcgcaatatttttattattttt 45698926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 45877202 - 45877138
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttat 98  Q
    ||||||| ||||| |||||||||| ||||| ||||||||||||||||||  ||||||||| ||||    
T  45877202 atatataaagtaatattttttatgccacgtgtcactttcacgtttattcgcaatatttttattat 45877138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 45878906 - 45878838
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| ||||||||  ||||||||  ||||||||| ||||||||    
T  45878906 atatataaagtaaggttttttatgtcacgtgtcactttcgtgtttattcgcaatatttttattattttt 45878838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 3696601 - 3696555
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  3696601 caatatttgatttggcataaatatctcaacaaacttttgatcttatc 3696555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 37041504 - 37041550
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  37041504 caatatttaatttggcataaatatctcaacaaacttttgatcttatc 37041550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 45876693 - 45876635
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttt 92  Q
    ||||||| |||||||||||||||| ||| | ||||||||||||||||||  ||||||||    
T  45876693 atatataaagtaagattttttatgccacatgtcactttcacgtttattcgcaatatttt 45876635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 52106924 - 52107005
Alignment:
Q  42 agtaagattttttatgtcacgtatcactttcacgtttattcttaata--tttttgtta-tttttaaaatcaatattttattt 120  Q
    ||||||||||||||||  |||| ||||||| |||||||||| |||||  ||||| ||| |||||||||||||||||| ||||    
T  52106924 agtaagattttttatgcgacgtgtcacttttacgtttattcgtaatatttttttattattttttaaaatcaatatttgattt 52107005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 25704234 - 25704189
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttat 184  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||    
T  25704234 caatattttatttaacataaatatctcaacaaacttttgatcttat 25704189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 29557041 - 29557086
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||    
T  29557041 atattttatttgacataaatatctcaacaaacttttgatcttatcc 29557086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 25704090 - 25704022
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| |||||| ||| || ||||| |||| |||| ||||||||    
T  25704090 atatataaagtaaggttttttatgtcacgtgtcacttccacattcattctcaatacttttattattttt 25704022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 45877894 - 45877826
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| |||||||||  |||| |||||||||||||||||   ||||||||| ||||||||    
T  45877894 atatataaagtaagtttttttatgctacgtgtcactttcacgtttatttacaatatttttattattttt 45877826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 45878412 - 45878344
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| | |||| ||||||||||||||| |||||||||  |||||||  ||||||||| ||||||||    
T  45878412 atatataaaataaggttttttatgtcacgtgtcactttcatttttattcgcaatatttttattattttt 45878344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 3696676 - 3696589
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgtta-tttttaaaatcaatattttattt 120  Q
    ||||||| |||| ||||||||||||||||| ||||||||| || |||||  | || |||| ||| ||||||||| |||||||| ||||    
T  3696676 atatataaagtatgattttttatgtcacgtgtcactttcatgtatattcgcagtagttttattattttttaaaaccaatatttgattt 3696589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 9588051 - 9588098
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||||||||  |||||||||||||| |||||||||||| ||||    
T  9588051 tcaatattttatttatcataaatatctcaacaaacttttgatcatatc 9588098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 40319522 - 40319569
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||| ||||  |||||||||||||| |||||||||||||||||    
T  40319522 tcaatatttgatttgacataaatatctcaagaaacttttgatcttatc 40319569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 42934184 - 42934230
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||    
T  42934184 caatatttgatttgacataaatatctcaacaaacttttgatcttatc 42934230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 43512636 - 43512590
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| | || ||||||||||||||| |||||||||||||||||    
T  43512636 caatatttgaattggcataaatatctcaacaaacttttgatcttatc 43512590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 45876873 - 45876827
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| | || ||||||||||||||| |||||||||||||||||    
T  45876873 caatatttgaattagcataaatatctcaacaaacttttgatcttatc 45876827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 40319193 - 40319258
Alignment:
Q  37 tatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||  ||||||||| || || |||||| |||||||||||  ||||||||| ||||||||    
T  40319193 tatatagtaaagttttttatgccaagtgtcacttccacgtttattcgcaatatttttattattttt 40319258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 45878329 - 45878284
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttat 184  Q
    |||||||| | || ||||||||||||||| ||||||||||||||||    
T  45878329 caatatttgaattggcataaatatctcaacaaacttttgatcttat 45878284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 19242780 - 19242824
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttat 184  Q
    ||||||| ||||  |||||||||||||||||||||||||| ||||    
T  19242780 aatatttgatttgacataaatatctcaataaacttttgattttat 19242824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 40319275 - 40319319
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||| |||| | ||||||||||||| |||||||||||||||||    
T  40319275 atatttgatttagaataaatatctcaacaaacttttgatcttatc 40319319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 42934101 - 42934169
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||  ||||||||| ||| | | ||||||||||||||||  ||||||||| ||||||||    
T  42934101 atatataaagtaaagttttttatgccacatgttactttcacgtttattcgcaatatttttattattttt 42934169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 43512711 - 43512651
Alignment:
Q  42 agtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||| ||||||||||||| | ||||||| ||||||||||  | ||||||| ||||||||    
T  43512711 agtaaggttttttatgtcacatgtcactttaacgtttattcgcagtatttttattattttt 43512651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 45877105 - 45877073
Alignment:
Q  153 gcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||||||||| |||||||||||||||||    
T  45877105 gcataaatatctcaagaaacttttgatcttatc 45877073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 45877797 - 45877765
Alignment:
Q  153 gcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||||||||| |||||||||||||||||    
T  45877797 gcataaatatctcaaaaaacttttgatcttatc 45877765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 45878562 - 45878530
Alignment:
Q  153 gcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||||||||| |||||||||||||||||    
T  45878562 gcataaatatctcaacaaacttttgatcttatc 45878530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 46483043 - 46483104
Alignment:
Q  54 tatgtcacgtatcactttcacgtttattcttaatatttttgttatttttaaaatcaatatttta 117  Q
    |||| ||| |||||||| |||||||||||| ||||||||| |||  ||||||| ||||||||||    
T  46483043 tatgccacatatcacttccacgtttattctcaatatttttatta--tttaaaaccaatatttta 46483104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 217307 - 217249
Alignment:
Q  42 agtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattt 100  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  217307 agtaaggttttttatgtcacgtatcactttcacgtttattcgtaatatttttattattt 217249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 47396178 - 47396246
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  47396178 atatataaagtaaggttttttatgtcacgtgtcactttcacgtttattcgcaatatttttattattttt 47396246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 17076569 - 17076523
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  17076569 aatattttattttgcataaatatctcaacaaacttttgatcttatcc 17076523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 39778516 - 39778585
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttta 103  Q
    ||||||||| |||||||||||||||||| | |||||| |||||||||||  ||||||||| |||||||||    
T  39778516 atatatatattaagattttttatgtcacttgtcacttccacgtttattcgcaatatttttattattttta 39778585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 34951744 - 34951676
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||  ||||||||||||||| |||||| |||||||||||| ||||||||| ||||||||    
T  34951744 atatataaagtaatgttttttatgtcacgtgtcacttccacgtttattctcaatatttttattattttt 34951676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 44155801 - 44155867
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttttaaaatcaatattt 115  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| |  |||||||||| |||||||    
T  44155801 ttttttatgtcacgtgtcactttcacgtttattcacaatatttttctattttttaaaattaatattt 44155867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 6496297 - 6496350
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  6496297 ttttttatgtcacgtgtcactttcacgtttattcgcaatatttttattattttt 6496350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 14102670 - 14102739
Alignment:
Q  34 atatatatagtaagatttttt-atgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| ||||||||||||| ||| ||||| ||||||||||||||||||  ||||||||| ||||||||    
T  14102670 atatataaagtaagatttttttatgccacgtgtcactttcacgtttattcgcaatatttttattattttt 14102739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 14412687 - 14412756
Alignment:
Q  34 atatatatagtaagatttttt-atgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| ||||||||||||| ||| ||||| ||||||||||||||||||  ||||||||| ||||||||    
T  14412687 atatataaagtaagatttttttatgccacgtgtcactttcacgtttattcgcaatatttttattattttt 14412756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 32984618 - 32984671
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||    
T  32984618 ttttttatgtcacgtgtcacttccacgtttattcgtaatatttttattattttt 32984671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 576764 - 576696
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| | |||| ||||||||||||||| ||||||||||||||||||  | ||||||| ||||||||    
T  576764 atatataaactaaggttttttatgtcacgtgtcactttcacgtttattcccattatttttattattttt 576696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 19924948 - 19925016
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| |||| ||||||| || |||||| |||||||||||| ||||||||| ||||||||    
T  19924948 atatataaagtaaggttttatatgtcatgtgtcacttccacgtttattctcaatatttttattattttt 19925016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 31580586 - 31580526
Alignment:
Q  42 agtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||||||||||||| || || ||||||||||||||||||  ||||||||| ||||||||    
T  31580586 agtaagattttttatgccaagtgtcactttcacgtttattcgcaatatttttattattttt 31580526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 39012726 - 39012658
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||||||||||||||||| ||||||  || || ||||| ||||||||| ||||||||    
T  39012726 atatataaagtaagattttttatgtcacgtgtcacttcaacattcattctcaatatttttattattttt 39012658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 31580240 - 31580193
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  31580240 tcaatatttgatttggcataaatatctcaacaaacttttgatcttatc 31580193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 32984685 - 32984732
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  32984685 tcaatatttaatttggcataaatatctcaagaaacttttgatcttatc 32984732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 31580511 - 31580465
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||| |||||||||||||| |||||||||||||||||    
T  31580511 caatatttgatttttcataaatatctcaacaaacttttgatcttatc 31580465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 39580963 - 39581009
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  39580963 caatatttgatttggcataaatatctcaacaaacttttgatcttatc 39581009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 39957349 - 39957303
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  39957349 caatatttgatttggcataaatatctcaacaaacttttgatcttatc 39957303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 39957597 - 39957552
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||    
T  39957597 aatatttgatttggcataaatatctcaacaaacttttgatcttatc 39957552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 39957432 - 39957364
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||||||||||| ||||| |||||| | ||||||||   ||||||||| ||||||||    
T  39957432 atatataaagtaagattttttatgccacgtgtcacttcctcgtttatttgcaatatttttattattttt 39957364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 576936 - 576890
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| ||||||||||| |||||    
T  576936 caatatttgatttggcataaatatctcaacaaacttttgatgttatc 576890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 14102754 - 14102800
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| | |||||||||||||||    
T  14102754 caatatttaatttggcataaatatctcaacatacttttgatcttatc 14102800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 14412771 - 14412817
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| | |||||||||||||||    
T  14412771 caatatttaatttggcataaatatctcaacatacttttgatcttatc 14412817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 47396261 - 47396307
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||||| ||  |||||||||||||| |||||||||||||||||    
T  47396261 caatattttaattgacataaatatctcaacaaacttttgatcttatc 47396307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 48104448 - 48104494
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| | || ||||||||||||||| |||||||||||||||||    
T  48104448 caatatttgaattggcataaatatctcaacaaacttttgatcttatc 48104494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 20420670 - 20420715
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||  |||||||||||||| ||||||| ||||||||||    
T  20420670 atattttatttgacataaatatctcaacaaactttagatcttatcc 20420715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 39778599 - 39778644
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttat 184  Q
    |||||||| ||||  |||||||||||||| ||||||||||||||||    
T  39778599 caatatttgatttgacataaatatctcaacaaacttttgatcttat 39778644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 577019 - 576951
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| |||||| || ||| | | ||||||||||||||||  ||||||||| ||||||||    
T  577019 atatataaagtaaggttttttttgccacatgttactttcacgtttattcgcaatatttttattattttt 576951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 14104074 - 14104122
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattc 82  Q
    ||||||| |||||| ||||||||| ||||| |||||| |||||||||||    
T  14104074 atatataaagtaaggttttttatgccacgtgtcacttccacgtttattc 14104122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 14414091 - 14414139
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattc 82  Q
    ||||||| |||||| ||||||||| ||||| |||||| |||||||||||    
T  14414091 atatataaagtaaggttttttatgccacgtgtcacttccacgtttattc 14414139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 39012866 - 39012822
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttat 184  Q
    ||||||||||||  |||||||||||||| ||| ||||||||||||    
T  39012866 aatattttatttaacataaatatctcaacaaatttttgatcttat 39012822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 8888355 - 8888287
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  8888355 atatataaagtaaggttttttatgtcacgtgtcactttcacgtttattcgcaatatttttattattttt 8888287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 362046 - 361987
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatattttt 93  Q
    ||||||| |||||| ||||||||||||| | ||||||||||||||||||| |||||||||    
T  362046 atatataaagtaaggttttttatgtcacatgtcactttcacgtttattctcaatattttt 361987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 8888124 - 8888056
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| ||| | ||||||||||||||||||  ||||||||| ||||||||    
T  8888124 atatataaagtaaggttttttatgccacatgtcactttcacgtttattcgcaatatttttattattttt 8888056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 8888522 - 8888475
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  8888522 tcaatatttgatttggcataaatatctcaacaaacttttgatcttatc 8888475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 8888040 - 8887994
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||||    
T  8888040 caatatttgatttgacataaatatctcaataaacttttgatcttatc 8887994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 8888272 - 8888226
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  8888272 caatatttgatttggcataaatatctcaacaaacttttgatcttatc 8888226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 18085793 - 18085837
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatattttt 93  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||    
T  18085793 ttttttatgtcacgtgtcacttctacgtttattcttaatattttt 18085837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 361959 - 361914
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||  ||||||||| |||| ||||||||||||||||||    
T  361959 atattttatttgacataaatatttcaacaaacttttgatcttatcc 361914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 8888589 - 8888536
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||||||| |||||| |||||||||||  ||||||||| || |||||    
T  8888589 ttttttatgtcacgtgtcacttccacgtttattcgcaatatttttttttttttt 8888536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 24982806 - 24982873
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttt 101  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||  ||||||||| |||||||    
T  24982806 atatataaagtaagattttttatgtcacgtgtcacttccacgtttattcacaatatttttattatttt 24982873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 24982625 - 24982693
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| |||||  ||||||||| ||||||||    
T  24982625 atatataaagtaagattttttatgtcacgtgtcacttccacgtatattcgcaatatttttattattttt 24982693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 16680699 - 16680750
Alignment:
Q  51 ttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||||||||    
T  16680699 ttttatgtcacgtgtcactttcacgtttattcgtaatatttttattattttt 16680750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 24983055 - 24983123
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| |||||| ||||| |||||  ||||||||| ||||||||    
T  24983055 atatataaagtaaggttttttatgtcacgtgtcacttccacgtatattcgcaatatttttattattttt 24983123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 18308165 - 18308119
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  18308165 caatatttaatttggcataaatatctcaacaaacttttgatcttatc 18308119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 39028089 - 39028135
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  39028089 caatatttaatttggcataaatatctcaacaaacttttgatcttatc 39028135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 42708998 - 42709044
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  42708998 caatatttgatttagcataaatatctcaacaaacttttgatcttatc 42709044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 5423794 - 5423847
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||||||| |||||| |||||||||||| |||||| || ||||||||    
T  5423794 ttttttatgtcacgtgtcacttccacgtttattctcaatattattattattttt 5423847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 8388411 - 8388358
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||| ||||| |||||||||||||||||  |||||||||| ||||||||    
T  8388411 ttttttatgccacgtgtcactttcacgtttatttgtaatatttttattattttt 8388358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 24982709 - 24982754
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||    
T  24982709 aatatttgatttggcataaatatctcaacaaacttttgatcttatc 24982754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 40940476 - 40940431
Alignment:
Q  141 atattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||    
T  40940476 atattttatttgacataaatatctcaacaaacttttgatcttatcc 40940431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 18308248 - 18308180
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| |||||  ||||| |||||||||||  ||||||||| ||||||||    
T  18308248 atatataaagtaaggttttttatgccacgtcacacttccacgtttattcgcaatatttttattattttt 18308180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 18307997 - 18307938
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatattttt 93  Q
    ||||||| |||||| ||||||||| ||||| |||||| |||||||||||  |||||||||    
T  18307997 atatataaagtaaggttttttatgccacgtgtcacttccacgtttattcgcaatattttt 18307938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 42704869 - 42704936
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttt 101  Q
    ||||||| |||||  ||||||||||||| |  |||||||||||||||||  ||||||||| |||||||    
T  42704869 atatataaagtaaagttttttatgtcacatggcactttcacgtttattcacaatatttttattatttt 42704936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 4018564 - 4018519
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttat 184  Q
    |||||||||||||  ||| |||||||||| ||||||||||||||||    
T  4018564 caatattttatttaacattaatatctcaacaaacttttgatcttat 4018519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 5423864 - 5423908
Alignment:
Q  142 tattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||  ||||||| ||||||| ||||||||||||||||||    
T  5423864 tattttattacgcataaacatctcaacaaacttttgatcttatcc 5423908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 33021781 - 33021825
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatattttt 93  Q
    ||||||||||||||| ||||||||| ||||||||  |||||||||    
T  33021781 ttttttatgtcacgtgtcactttcatgtttattcacaatattttt 33021825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 38072090 - 38072046
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatattttt 93  Q
    ||||||||| ||||| || ||| ||||||||||||||||||||||    
T  38072090 ttttttatgccacgtgtcgcttccacgtttattcttaatattttt 38072046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 41529384 - 41529451
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| |||||||||||| || |||||| ||||| |||||  ||||||||| ||||||||    
T  41529384 atatataaagtaag-ttttttatgtcatgtgtcacttccacgtatattcgcaatatttttattattttt 41529451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 292930 - 293010
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgtta-tttttaaaatcaatat 113  Q
    ||||||| |||||| ||||||||| ||||| ||||||||||||| ||||  ||||||||| ||| ||||||||||||||||    
T  292930 atatataaagtaaggttttttatgccacgtgtcactttcacgttaattcgcaatatttttattattttttaaaatcaatat 293010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 29240854 - 29240922
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||||||||| |||||| |||||||||||  ||||||||| ||||||||    
T  29240854 atatataaagtaaggttttttatgtcacgtgtcacttccacgtttattcgcaatatttttattattttt 29240922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 33052437 - 33052489
Alignment:
Q  50 tttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||||||||||| |||||||||||||||||| |||||||||| ||||||||    
T  33052437 tttttatgtcacgtgtcactttcacgtttattcgtaatatttttattattttt 33052489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 36245887 - 36245819
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||||||||||  ||||| |||||| |||||||||||| ||||||||| ||||||||    
T  36245887 atatataaagtaagattttttattccacgtgtcacttccacgtttattctcaatatttttattattttt 36245819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 292657 - 292726
Alignment:
Q  33 aatatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||||| ||||| |||||||||||||||| ||||||| |||||||||  |||||||| | ||||||||    
T  292657 aatatataaagtaatattttttatgtcacgtgtcacttttacgtttattagtaatatttctattattttt 292726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 7783235 - 7783280
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||    
T  7783235 aatatttgattttgcataaatatctcaacaaacttttgatcttatc 7783280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 26591945 - 26591998
Alignment:
Q  49 ttttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  26591945 ttttttatgtcacgtgtcactttcacgtttattcgcaatatttttattattttt 26591998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 35169123 - 35169192
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttta 103  Q
    ||||||| |||||| ||||||||||||||  ||||||||||||||||||  | ||||||| |||||||||    
T  35169123 atatataaagtaaggttttttatgtcacgagtcactttcacgtttattcacagtatttttattattttta 35169192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 7783446 - 7783514
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||| | ||||| ||||||||||||||||||  ||||||||| ||||||||    
T  7783446 atatataaagtaaggttttttaagccacgtgtcactttcacgtttattcgcaatatttttattattttt 7783514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 19263503 - 19263436
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||| |||  ||||||||| ||||||||    
T  19263503 atatataaagtaagattttttatgtcacgt-gcactttcacgtttcttcgcaatatttttattattttt 19263436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 26592177 - 26592245
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||||||||||| ||| | ||||||||||||||||||   |||||||| ||||||||    
T  26592177 atatataaagtaagattttttatgccacatgtcactttcacgtttattcgcgatatttttattattttt 26592245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 33052673 - 33052741
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| ||||||  |||||||||||| | ||||||||||||||||||  ||||||||| ||||||||    
T  33052673 atatataaagtaagggtttttatgtcacatgtcactttcacgtttattcacaatatttttattattttt 33052741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 40415325 - 40415393
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||||||||||||||||||||||| ||| | || ||| |||||||||||| ||||||| | ||||||||    
T  40415325 atatatatagtaagattttttatgccacatgtcccttccacgtttattctcaatatttatattattttt 40415393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 40506543 - 40506611
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||  |||||||| |||||| ||||||||||||||||||  ||||||||| ||||||||    
T  40506543 atatataaagtaaagttttttatatcacgtttcactttcacgtttattcgcaatatttttattattttt 40506611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 40415408 - 40415455
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||    
T  40415408 caatattttatttgacataaatatctcaacaaacttttgatcttatcc 40415455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 788644 - 788690
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  788644 caatatttgatttggcataaatatctcaacaaacttttgatcttatc 788690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 7782737 - 7782783
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  7782737 caatatttgatttggcataaatatctcaacaaacttttgatcttatc 7782783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 16467177 - 16467223
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  16467177 caatatttgatttggcataaatatctcaacaaacttttgatcttatc 16467223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 38184604 - 38184558
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||| | ||||||||||||| ||||||||||||||||||    
T  38184604 aatattttatttcgtataaatatctcaacaaacttttgatcttatcc 38184558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 38213753 - 38213799
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    |||||||||||| | ||||||||||||| ||||||||||||||||||    
T  38213753 aatattttatttcgtataaatatctcaacaaacttttgatcttatcc 38213799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 42800880 - 42800941
Alignment:
Q  32 caatatatatagtaagatttt-ttatgtcacgtatcactttcacgtttattcttaatatttt 92  Q
    ||||||||| ||||||||||| |||||||| || ||||||||||||||| ||| ||||||||    
T  42800880 caatatataaagtaagatttttttatgtcaagtgtcactttcacgtttaatctcaatatttt 42800941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 788561 - 788629
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||  |||||||||||| || ||| ||||||||||||||  ||||||||| ||||||||    
T  788561 atatataaagtaaagttttttatgtcatgtgtcagtttcacgtttattcgcaatatttttattattttt 788629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 15387292 - 15387360
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| || || || ||| |||||||||||| ||||||||| ||||||||    
T  15387292 atatataaagtaaggttttttatgccatgtgtcgcttccacgtttattctcaatatttttattattttt 15387360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 28610065 - 28610133
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    |||| ||||||||| || |||||| ||| | ||||||||||||||||||| ||||||||| ||| ||||    
T  28610065 atatgtatagtaaggttgtttatgccacatgtcactttcacgtttattctcaatatttttattagtttt 28610133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 40506345 - 40506400
Alignment:
Q  60 acgtatcactttcacgtttattcttaatatttttgttatttttaaaatcaatattt 115  Q
    |||| ||||||||| ||||||||  ||||||||| ||||||||||||| |||||||    
T  40506345 acgtgtcactttcatgtttattcgcaatatttttattatttttaaaattaatattt 40506400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 7783771 - 7783817
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||    
T  7783771 caatatttaatttgacataaatatctcaacaaacttttgatcttatc 7783817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 29240937 - 29240983
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| | |||||||||||||||    
T  29240937 caatatttgatttcgcataaatatctcaacacacttttgatcttatc 29240983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 33052756 - 33052802
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| | || ||||||||||||||||||||||||||| |||||    
T  33052756 caatatttgaattggcataaatatctcaataaacttttgattttatc 33052802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 35168955 - 35169001
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| ||||  |||||||||||||| |||||||||||||||||    
T  35168955 caatatttaatttgacataaatatctcaacaaacttttgatcttatc 35169001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 7782907 - 7782964
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatattt 91  Q
    ||||||| |||||| |||||||||  |||||| | ||||||||||||||| |||||||    
T  7782907 atatataaagtaaggttttttatgctacgtattagtttcacgtttattctcaatattt 7782964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 7783691 - 7783756
Alignment:
Q  36 atatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttt 101  Q
    ||||| ||||||||||||||||||||   |||||||||| ||||||  || ||||||| |||||||    
T  7783691 atataaagtaagattttttatgtcacaagtcactttcacttttatttgtagtatttttattatttt 7783756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 7784030 - 7784075
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||| |||| ||||||||||||||| ||||||||||| |||||    
T  7784030 aatatttaatttggcataaatatctcaacaaacttttgattttatc 7784075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 35169208 - 35169253
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||| ||||  |||||||||||||| |||||||||||||||||    
T  35169208 aatatttaatttgacataaatatctcaacaaacttttgatcttatc 35169253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 40506627 - 40506672
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||| |||| ||||||||||||||| ||||||||||| |||||    
T  40506627 aatatttgatttggcataaatatctcaacaaacttttgatattatc 40506672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 41482547 - 41482502
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||||||  |||| ||||||||| |||||||||||||||||    
T  41482547 aatattttatttgtcatacatatctcaacaaacttttgatcttatc 41482502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 293019 - 293051
Alignment:
Q  153 gcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||||||||| |||||||||||||||||    
T  293019 gcataaatatctcaacaaacttttgatcttatc 293051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 30627286 - 30627334
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    ||||||||||||||   ||||||||||||| ||||| ||||||||||||    
T  30627286 tcaatattttatttcaaataaatatctcaacaaactattgatcttatcc 30627334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 35168872 - 35168920
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattc 82  Q
    ||||||| |||||| ||||||||| ||||| |||||| |||||||||||    
T  35168872 atatataaagtaaggttttttatgccacgtgtcacttccacgtttattc 35168920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 38184687 - 38184619
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| ||  | |||||| || ||||||||||||||||||| || |||||    
T  38184687 atatataaagtaaggttttttatgccatatgtcacttccaagtttattcttaatatttttattcttttt 38184619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 38213670 - 38213738
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||| ||||||||| ||  | |||||| || ||||||||||||||||||| || |||||    
T  38213670 atatataaagtaaggttttttatgccatatgtcacttccaagtttattcttaatatttttattcttttt 38213738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 23865932 - 23865864
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||||||||||||| ||||| |||||| |||||||||||  ||||||||| ||||||||    
T  23865932 atatataaagtaagattttttatgccacgtgtcacttccacgtttattcgcaatatttttattattttt 23865864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 25853737 - 25853691
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatcc 186  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||    
T  25853737 aatattttatttcacataaatatctcaataaacttttgatcttatcc 25853691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 4232610 - 4232668
Alignment:
Q  43 gtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatttt 101  Q
    ||||||||||||||| ||||| |||||| |||||||||||  ||||||||| |||||||    
T  4232610 gtaagattttttatgccacgtgtcacttccacgtttattcgcaatatttttattatttt 4232668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 44719925 - 44719880
Alignment:
Q  140 aatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||    
T  44719925 aatatttaatttggcataaatatctcaacaaacttttgatcttatc 44719880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 23865850 - 23865803
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||| |||| |||| ||||||||||||||| |||||||||||||||||    
T  23865850 tcaaaatttgatttggcataaatatctcaacaaacttttgatcttatc 23865803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 43842626 - 43842673
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||| ||||  |||||||||||||| |||||||||||||||||    
T  43842626 tcaatatttaatttgacataaatatctcaacaaacttttgatcttatc 43842673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 44196747 - 44196700
Alignment:
Q  138 tcaatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    ||||||||| ||||  |||||||||||||| |||||||||||||||||    
T  44196747 tcaatatttaatttgacataaatatctcaacaaacttttgatcttatc 44196700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 4232445 - 4232491
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| |||| ||||||||||||||| | |||||||||||||||    
T  4232445 caatatttaatttggcataaatatctcaacatacttttgatcttatc 4232491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 37200539 - 37200493
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| | || ||||||||||||||| |||||||||||||||||    
T  37200539 caatatttgaattggcataaatatctcaacaaacttttgatcttatc 37200493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 9261306 - 9261374
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| || ||| ||||||||| ||| | || |||||||||||||||| ||||| ||| ||||||||    
T  9261306 atatatagaggaaggttttttatgccacatgtcgctttcacgtttattctcaatatatttattattttt 9261374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 120652 - 120584
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttattttt 102  Q
    ||||||| |||||  |||||||||||||   ||||||||||||||||||  ||||||||| ||||||||    
T  120652 atatataaagtaaagttttttatgtcacacgtcactttcacgtttattcacaatatttttattattttt 120584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 120569 - 120523
Alignment:
Q  139 caatattttattttgcataaatatctcaataaacttttgatcttatc 185  Q
    |||||||| | || ||||||||||||||| |||||||||||||||||    
T  120569 caatatttgaattggcataaatatctcaacaaacttttgatcttatc 120523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 120906 - 120842
Alignment:
Q  34 atatatatagtaagattttttatgtcacgtatcactttcacgtttattcttaatatttttgttatt 99  Q
    ||||||| |||||||||||| ||| ||||| |||||| |||||||||||  ||||||||| |||||    
T  120906 atatataaagtaagattttt-atgccacgtgtcacttccacgtttattcgcaatatttttattatt 120842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University