View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2652_low_9 (Length: 626)
Name: NF2652_low_9
Description: NF2652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2652_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 63 - 363
Target Start/End: Original strand, 35614069 - 35614362
Alignment:
| Q |
63 |
tatcatgaataaattaacgaccatatccttcttaaccctgtggcaatgtggccaaatgtttatccacttnnnnnnnnnnnnnnnnncactgcgtgctgat |
162 |
Q |
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| T |
35614069 |
tatcatgaataagttaacgaccctatccatcttaaacctgtagcaatgtggccaaatgtttatccactttgtgtgtgtg-------cattgtgtgctgat |
35614161 |
T |
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| Q |
163 |
tatgcatgcaatagtgaaaaagaacattat----gataaaatatttctttcaaattttcaat-aaactatttgacatgtcttatattgacatttacacgt |
257 |
Q |
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| T |
35614162 |
tatgcaaatcctagtgaaaaagaacattatttatgataaaacgtttctttcaatttttcaatcaaactatttgacatgtct-atattgatatttatacgt |
35614260 |
T |
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| Q |
258 |
caatataccaagaccannnnnnncactttgcttgatttgagttacaaaatgagaaagtgtagtaaaatactcattttactttatatgagaaaaattagga |
357 |
Q |
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| T |
35614261 |
caatataccaagac--tttttttcactttgcttaatttgagtgacaaaatgagaaagtgtagtaaaatactcattttgccttatat--gaaaaattaaga |
35614356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35613937 - 35613971
Alignment:
| Q |
1 |
ttaggaaagtaaaagcacgatggagataaagtata |
35 |
Q |
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| T |
35613937 |
ttaggaaagtaaaagcacgatggagataaagtata |
35613971 |
T |
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