View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2653_high_10 (Length: 399)
Name: NF2653_high_10
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 209 - 390
Target Start/End: Complemental strand, 34378866 - 34378685
Alignment:
| Q |
209 |
ttggaaacctttgaaggaaattggatcgaaatgacttaagcggctaatgtagtgctctgtgactgtagtcgtgacggtgatggacacttgcagtggcact |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34378866 |
ttggaaacctttgaaggaaattggatcgaaatgacttaagcggctaatgtagtgctctgtgactgtagtcgtgacggtgatggacacttgcagtggcact |
34378767 |
T |
|
| Q |
309 |
aatcgacatagaaagaaaagcttcaaatatttttgggccatttattatttatttaatggaggcatttatttcagatattctt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34378766 |
aatcgacatagaaagaaaagcttcaaatatttttgggccatttattatttatttaatggaggcatttatttcagatattctt |
34378685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 34379079 - 34379007
Alignment:
| Q |
1 |
agtgactgaaaaatgtt-gtaatatagtgaagaagaagaaaccaagaatgattatgatgaaatttgattcctg |
72 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34379079 |
agtgactgaaaaatgtttgtaatatagtgaagaagaagaaaccaagaatgattatgatgaaatttgattcctg |
34379007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University