View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2653_high_12 (Length: 357)

Name: NF2653_high_12
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2653_high_12
NF2653_high_12
[»] chr5 (1 HSPs)
chr5 (20-311)||(34084942-34085233)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 34084942 - 34085233
Alignment:
Q  20 cttcacacacgtctaccatcaccacaaagcttcttaggaaatatttcttcacatgtctccatgaacgcttcaacaatgacatgatggtgacactttgcat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34084942 cttcacacacgtctaccatcaccacaaagcttcttaggaaatatttcttcacatgtctccatgaacgcttcaacaatgacatgatggtgacactttgcat 34085041  T
Q  120 taagctgaagaaaacactcaagtaattcttgaagatcattttctgaataaatctgtctctccaatatcatttgaagtatagagtttcgaaaatcttcata 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34085042 taagctgaagaaaacactcaagtaattcttgaagatcattttctgaataaatctctctctccaatatcatttgaagtatagagtttcgaaaatcttcata 34085141  T
Q  220 cggctccttggattccttctcaacggcaatgctatctatgagttttgtagccggctttaaaatcctataattattattgttgtcgtttgaga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34085142 cggctccttggattccttctcaacggcaatgctatctatgagttttgtagccggctttaaaatcctataattattattgttgtcgtttgaga 34085233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University