View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2653_high_13 (Length: 344)
Name: NF2653_high_13
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 19309778 - 19309532
Alignment:
| Q |
41 |
aatatgtgatacatgtttaaacatagatagtacttgcctatgtagattttcattcttgttgatgtatgaaaattgtttgtttgagatagtgcatgtaaat |
140 |
Q |
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| T |
19309778 |
aatatgtgatacatgtttgaacatagatagtacttgcctatgtagattttcattcttgttgatgtatgaaaattgtttgtttgagatagtgcatgtaaat |
19309679 |
T |
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| Q |
141 |
tgtcaaaatatcaagtggttcttttaatcatattatttgctttgtgtaagaaattattatcattaatattgtgttgatatgatatgtgcatgataatatt |
240 |
Q |
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| T |
19309678 |
tgtcaaaatatcaggtggttcttttaatca-attatttgctttgtgtaagaaattattatcattaatattgtgttgatattatatgtgcatgataatatt |
19309580 |
T |
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| Q |
241 |
acatgtgtagcataaaagagcccaactacaattgtatcaaactcctat |
288 |
Q |
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| T |
19309579 |
atatgtgtagcataaaagagcccaactacaattgtatcaaagtcctat |
19309532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 10186297 - 10186246
Alignment:
| Q |
188 |
aagaaattattatcattaatattgtgttgatatgatatgtgcatgataatat |
239 |
Q |
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| T |
10186297 |
aagaaattattatcattaatattgtgttgatattatatgtacatgttaatat |
10186246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 47070997 - 47070914
Alignment:
| Q |
39 |
tgaatatgtgatacatgtttaaacatagatagtacttgcctatgtagattttcattcttgttgatgtatgaaaattgtttgttt |
122 |
Q |
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| T |
47070997 |
tgaatatgtgatacatgtttgaacatagatagtgtttgcctatgtagattttcgctccggttgatgcatgaaaattgtttgttt |
47070914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 54859799 - 54859839
Alignment:
| Q |
82 |
gtagattttcattcttgttgatgtatgaaaattgtttgttt |
122 |
Q |
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| T |
54859799 |
gtagattttcgttctggttgatgcatgaaaattgtttgttt |
54859839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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