View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2653_high_18 (Length: 282)

Name: NF2653_high_18
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2653_high_18
NF2653_high_18
[»] chr8 (1 HSPs)
chr8 (11-282)||(34378408-34378699)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 34378408 - 34378699
Alignment:
Q  11 caaagggtatgaagttaattttatttgaattttaaaattataatatttcaaagccatctaaaataaaatatatagtcaattgaccgacttaattctattt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34378408 caaaaggtatgaagttaattttatttgaattttaaaattataatatttcaaagccatctaaaataaaatatttagtcaattgaccgacttaattctattt 34378507  T
Q  111 aatttattttacaataattttcttactta---------------------atgatggacgaagccgaatttacctaaactctttgaagaaaacnnnnnnn 189  Q
    |||||||||||||||||||||||||||||                     |||||||||||||||||||||||||||||||||||||||||||           
T  34378508 aatttattttacaataattttcttacttaattaaacaccattgctctactatgatggacgaagccgaatttacctaaactctttgaagaaaac-aaaaaa 34378606  T
Q  190 nnttccaacataagtacacggtttgtttgtgaaaaatgtgtttaaagtaggatttcggactacaccaaaatgatttccaagaatatctgaaat 282  Q
      ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34378607 aattccaacataagtacacggtttgtttgtggaaaatgtgtttaaagtaggatttcggactacaccaaaatgatttccaagaatatctgaaat 34378699  T

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