View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2653_high_2 (Length: 774)
Name: NF2653_high_2
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_high_2 |
 | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold1043 (1 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 8795322 - 8794995
Alignment:
| Q |
11 |
aatatgtgtataacatttattatatagatggttaataacatgatacannnnnnnaaacataaaaattcactgcatttcattaatcaaaatatgttcaata |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
8795322 |
aatatgtgtataacatttattatatacatggttagtaacatgatacatttttttaaacataaaaatttactgtatttcattaatcaaaatatgttcaata |
8795223 |
T |
|
| Q |
111 |
caaattagtatatcaactaaaatctcgaaacaaactatatacgaccgcttatactgttatgaagtgtcaccctaaattccaaaaataattattactatta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8795222 |
caaattagtatatcaactaaaatctcgaaacaaactatatatgaccgcttatcctgttatgaagtgtcatcctaaattccaaaaataattattactatta |
8795123 |
T |
|
| Q |
211 |
tttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttga |
310 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || | |
|
|
| T |
8795122 |
tttattcaaaaataaagtttgattcgcagcggagaatgtcaaataaaaacctttctattaatataaaaattctcccacaaaatttaggataccacattaa |
8795023 |
T |
|
| Q |
311 |
ctcataacaaacataattcacatttcac |
338 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8795022 |
ctcataacaaacataattcacatttcac |
8794995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 588 - 723
Target Start/End: Complemental strand, 8794999 - 8794864
Alignment:
| Q |
588 |
ttcaccaccttctttgaatcaagctcgttatcaacatattctacattgaaatcatgtacctgattgagggctataaaaaagaccaagtgcttcacccaca |
687 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8794999 |
ttcaccactttctttgaataaagctcgccatcaacatattctacattgaaatcatgaacctgattgagggctataaaaaagaccaagtgcttcacccaca |
8794900 |
T |
|
| Q |
688 |
tgcaaatcaaacataggtgagaaccattccatttta |
723 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8794899 |
agcaaatcaaacataggtgagaaccattgcatttta |
8794864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 473
Target Start/End: Original strand, 19018914 - 19019033
Alignment:
| Q |
354 |
aataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattccct |
453 |
Q |
| |
|
|||||||||||||| ||| ||| ||||| |||||||||||||||| |||||| | ||| || ||| ||||||||||||||||||||||||| || | |
|
|
| T |
19018914 |
aataatattaacatcgaaatttttacttttaaaaatactttcttttacatcataaacaattgttttctagtacaaaactaaataagtaagcatatccctt |
19019013 |
T |
|
| Q |
454 |
tcctagtgtcaccatcagag |
473 |
Q |
| |
|
| | ||||||| ||||||| |
|
|
| T |
19019014 |
ttcccgtgtcactatcagag |
19019033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 16985621 - 16985568
Alignment:
| Q |
82 |
gcatttcattaatcaaaatatgttcaatacaaattagtatatcaactaaaatct |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||| |||||| |||| |
|
|
| T |
16985621 |
gcatttcattaatcaaaatatgttcaatacaatttggtatattaactaatatct |
16985568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 1e-80; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 178 - 474
Target Start/End: Original strand, 23906691 - 23906987
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||| ||||||||| |||||||||||||||| | |||| | ||||| |
|
|
| T |
23906691 |
caccctaaattccaataataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgtcaaataaaaacttctctaatgatatagg |
23906790 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatccttt |
377 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||||||||| ||| |
|
|
| T |
23906791 |
aattcttccacaagatttaggagatcacattgactcataacaaacataattcagatttcacttcattaaaaattatagtaatattaacattgaatctttt |
23906890 |
T |
|
| Q |
378 |
gcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| || |||| ||||||| |||||||||||||||| || || | ||||||| |||||||| |
|
|
| T |
23906891 |
tcttttgaaaatacttcattttaaatcatagacaatggttttcttgtacaaaatgaaataagtaagcatatcccttttcccgtgtcactatcagagc |
23906987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 191 - 445
Target Start/End: Complemental strand, 39528324 - 39528063
Alignment:
| Q |
191 |
aaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaa-------cctttctattaatataaaaattct |
283 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||| | ||||||||| ||||||||||||| | |||||||| ||||| ||||| | |
|
|
| T |
39528324 |
aaaaataattattactactatttattcaaaaatagagtttgattcacagcggagaatgtcaaataaaaaataaaaacatttctattgatatagaaattat |
39528225 |
T |
|
| Q |
284 |
tccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctttgctttt |
383 |
Q |
| |
|
|| ||||||||||||||| ||| || ||||||||||||||||||||| ||||||||||| | ||| ||| |||||||||||||| ||||| ||| ||||| |
|
|
| T |
39528224 |
tctacaagatttaggataacacattaactcataacaaacataattcatatttcacttccttgaaacttataataatattaacatcgaatcatttactttt |
39528125 |
T |
|
| Q |
384 |
gaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagca |
445 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||| || ||||||||||||||||||| |
|
|
| T |
39528124 |
gaaaatactttcttttacatcatagaaaatggttttcttatataaaactaaataagtaagca |
39528063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 178 - 390
Target Start/End: Complemental strand, 20186459 - 20186248
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | |||||| |||||||| ||||||||| ||||| ||||||||| || || ||||||||| |
|
|
| T |
20186459 |
caccctaaat-ccaaaaataattattactattatttaattaaaaatggagtttgattcgcagcggaaagtgttaaataaaaaatttcttaataatataaa |
20186361 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatccttt |
377 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||| |||||||||| |||||||| ||||||||||| | ||||||| |||||||||||||| | | ||| |
|
|
| T |
20186360 |
aattcttccacaagatgtaggatatcacattgaatcataacaaatataattcagatttcacttccttgaaaattataataatattaacatcaagtatttt |
20186261 |
T |
|
| Q |
378 |
gcttttgaaaata |
390 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20186260 |
gcttttgaaaata |
20186248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 263 - 445
Target Start/End: Complemental strand, 23248284 - 23248102
Alignment:
| Q |
263 |
ttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatatt |
362 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| | |||||| |||| |||| |
|
|
| T |
23248284 |
ttctattaatataagaattctttcacaagatttaggataccacattgattcataacgaacataattcacatttcacttccttgaaaattgtaatactatt |
23248185 |
T |
|
| Q |
363 |
aacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagca |
445 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| | ||||| |||| || |||| || ||||||||| ||||||||| |
|
|
| T |
23248184 |
aacatcgaatcttttgcttttgaaaatactttcttttacaatatagataatggttatcttgtaaaaaactaaacaagtaagca |
23248102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 179 - 342
Target Start/End: Complemental strand, 35923497 - 35923333
Alignment:
| Q |
179 |
accctaaattccaaaaataattattactattatttattcaaaaataaagtttgatcc-gcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| ||||| ||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
35923497 |
accctaaat-ccaaaaataattattgctattaattatttaaaaatagagtttgattttgcagcggagagtgtcaaataaaagcatttctattaatataag |
35923399 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcat-aacaaacataattcacatttcacttcc |
342 |
Q |
| |
|
|||||| |||| |||||||||||| ||| | ||||||| || |||||||||||||||||||||||| |
|
|
| T |
35923398 |
aattctcccactagatttaggatatcacatagactcataaaaaaacataattcacatttcacttcc |
35923333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 314 - 448
Target Start/End: Original strand, 22520799 - 22520933
Alignment:
| Q |
314 |
ataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaat |
413 |
Q |
| |
|
||||||||||||||||| |||||||| | | ||||||| |||||||||||||| ||||| ||||||||||||| |||||||||||| |||||| | ||| |
|
|
| T |
22520799 |
ataacaaacataattcatatttcactctcttgaaaattataataatattaacatcgaatcttttgcttttgaaagtactttcttttatatcataaataat |
22520898 |
T |
|
| Q |
414 |
gattctcttttacaaaactaaataagtaagcatat |
448 |
Q |
| |
|
| || |||| ||||||||||||||||||||||||| |
|
|
| T |
22520899 |
ggttttcttgtacaaaactaaataagtaagcatat |
22520933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 191 - 362
Target Start/End: Original strand, 22524310 - 22524480
Alignment:
| Q |
191 |
aaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaa |
290 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||| ||||| || |||||| |||| |||||||||||||| || ||| |||||||| |||| ||||| || |
|
|
| T |
22524310 |
aaaattaattattactattatttaattaaaaatagagtttaattcgcagcagagaatgtcaaataaaaactttcctaataatataagaatttttccataa |
22524409 |
T |
|
| Q |
291 |
gatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatatt |
362 |
Q |
| |
|
|| | |||||| ||| |||||||||||||||||||||| ||||||||||| | ||||| | ||||||||| |
|
|
| T |
22524410 |
ga-tcaggatatcacaccgactcataacaaacataattcagatttcacttccttgaaaatgataataatatt |
22524480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 22520717 - 22520782
Alignment:
| Q |
181 |
cctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagag |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||| || |||||||| |||||||||||| |
|
|
| T |
22520717 |
cctaaattccaaaaataattattactattatttaattaaaagtagagtttgattcgcagcggagag |
22520782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 23247258 - 23247197
Alignment:
| Q |
384 |
gaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagca |
445 |
Q |
| |
|
||||||||||||||||| || ||||| |||| || |||| |||||||||||| ||||||||| |
|
|
| T |
23247258 |
gaaaatactttcttttacattatagataatggttatcttgtacaaaactaaacaagtaagca |
23247197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 113
Target Start/End: Complemental strand, 15521431 - 15521401
Alignment:
| Q |
83 |
catttcattaatcaaaatatgttcaatacaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
15521431 |
catttcattaatcaaaatatgttcaatacaa |
15521401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 6742880 - 6742933
Alignment:
| Q |
82 |
gcatttcattaatcaaaatatgttcaatacaaattagtatatcaactaaaatct |
135 |
Q |
| |
|
||||||||||||| || || |||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
6742880 |
gcatttcattaattaagatgtgttcaatacaatttagtatattaaccaaaatct |
6742933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 178 - 474
Target Start/End: Complemental strand, 10736 - 10438
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
10736 |
caccctaaatcccaaac-taattattactattatttatccaaaaatagagtttgattcgcagtagagagtgtcaaataaaaacttttctattaatttaag |
10638 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacat-ttcacttccctaaaaatt---acaataatattaacattgaatc |
373 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| | |||||| | |||||||||||||| |||| |
|
|
| T |
10637 |
aattctcccacaagatttaggataccacattgactcataacagacataattcacataaacacttccttgaaaattataataataatattaacatcgaat- |
10539 |
T |
|
| Q |
374 |
ctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagag |
473 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||||||||| |||| || |||| |||||||| ||||||| |
|
|
| T |
10538 |
cttggcttttgaaaatactttcttttacatcatagaaaatgattttcttgcgcaaaattaaataagtaagtatatccctttcccagtgtcactatcagag |
10439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 182 - 448
Target Start/End: Original strand, 17417536 - 17417802
Alignment:
| Q |
182 |
ctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaatt |
281 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||||||| |||||||| |||||| || ||||||||||||||| | |||| ||||||| |||| |
|
|
| T |
17417536 |
ctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcagcagaacgtgtcaaataaaaacttctctaataatataggaatt |
17417635 |
T |
|
| Q |
282 |
cttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctttgctt |
381 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| |||| |||| |||||||||||||| |||| ||||||| |
|
|
| T |
17417636 |
cttccacaagatttaggatatcacattgactcataacaaacataattcatatttcacttcattaaatattataataatattaacatcaaatcttttgctt |
17417735 |
T |
|
| Q |
382 |
ttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatat |
448 |
Q |
| |
|
||||||||||||||||||| |||||| | ||| || |||| |||||||| |||||| ||||||||| |
|
|
| T |
17417736 |
ttgaaaatactttcttttacatcatatacaatagttttcttgtacaaaacgaaataattaagcatat |
17417802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 178 - 474
Target Start/End: Complemental strand, 19729590 - 19729294
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| | ||||||| |||||||| ||||||||| ||||| | |||||||| | |||| ||||||| |
|
|
| T |
19729590 |
caccctaaatccaaaaaataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgttagataaaaacttctctaataatatagg |
19729491 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatccttt |
377 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||| || | |||||||| ||||||| |||| ||||| || ||||| ||| |
|
|
| T |
19729490 |
aattcttccacaagatttaggatatcacattgactcataacaaacataatccagacttcacttcattaaaaatcgtaatagcattaatatcgaatctttt |
19729391 |
T |
|
| Q |
378 |
gcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| || | || |||||||| |||||||||||||||| || || | ||||||| |||||||| |
|
|
| T |
19729390 |
gcttttgaaaatactttcttttacatcatagtcaatggtttttttgtacaaaacgaaataagtaagcatatcccttttcccgtgtcactatcagagc |
19729294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 192 - 448
Target Start/End: Original strand, 6820314 - 6820570
Alignment:
| Q |
192 |
aaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaag |
291 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| || || |||||||||||||||||||| || |||||||||| |||| ||||||||| |
|
|
| T |
6820314 |
aaaataattattactattatttatttaaaaattgagtaatatttatagtggagagtgtcaaataaaaactttcaaattaatataagaatttttccacaag |
6820413 |
T |
|
| Q |
292 |
atttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctttgcttttgaaaatac |
391 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||||||||||||||||| | ||||||| |||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
6820414 |
atttaggataccacattgacacatagcaaacataattcacatttcacttctttgaaaattataataatattaacatcgaatctttttcttttgaaaatat |
6820513 |
T |
|
| Q |
392 |
tttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatat |
448 |
Q |
| |
|
||||||||| |||||| | |||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
6820514 |
tttcttttacatcataaacaatggttttcttatacaaaactaaataagtaagcatat |
6820570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 179 - 465
Target Start/End: Complemental strand, 3577425 - 3577142
Alignment:
| Q |
179 |
accctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaac------ctttctattaat |
272 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||| | ||||||| |||||||| ||||| | |||||||||| ||| |||||| |||| |
|
|
| T |
3577425 |
accctaaatcctaaaaataattactactattatttaattaaaaatagagtttgattcgcagtgaagagtgtcaactaattttttttttctttctcataat |
3577326 |
T |
|
| Q |
273 |
ataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaat |
372 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
3577325 |
ataagaattcttccacaagatttaggatatcacattacctcataacaaagataattcacatttcacttctttaaaaatta---------taacatcgaat |
3577235 |
T |
|
| Q |
373 |
cctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcac |
465 |
Q |
| |
|
| | |||||||||||||||||||||||| |||||||||||| || |||| |||||| ||||||||||||| |||| || ||||||||||||| |
|
|
| T |
3577234 |
catgtgcttttgaaaatactttcttttacatcatagaaaatagttttcttatacaaagctaaataagtaagaatatccctttcctagtgtcac |
3577142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 38836902 - 38836845
Alignment:
| Q |
83 |
catttcattaatcaaaatatgttcaatacaaattagtatatcaactaaaatctcgaaa |
140 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| ||| ||||||| |||| |
|
|
| T |
38836902 |
catttcattaatcaaaatgtgttcaatacattctagtatattaaccaaaatctagaaa |
38836845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 1e-71; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 178 - 448
Target Start/End: Original strand, 14744509 - 14744782
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |||| | |||||||| ||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
14744509 |
caccctaaatcccaaaaataattattactattattgattcgaaaacagagtttgattcgcagcggaaaatgtcaaataaaaacttttctattaatataag |
14744608 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcat----aacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
373 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||||| |||| |||||| || ||| |
|
|
| T |
14744609 |
aattcttccacaaaatttaggataccacattgactcataaaaaaaaaacataattcacatttcacttccttaaaaattttaatactattaaaatcaaata |
14744708 |
T |
|
| Q |
374 |
ctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatat |
448 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||| |||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
14744709 |
atttgctttt-aaaatactttcctttacatcatagataatggttatcttgtacaaaactaaataagtaagcatat |
14744782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 194 - 474
Target Start/End: Original strand, 34486483 - 34486763
Alignment:
| Q |
194 |
aataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaagat |
293 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | || |||||||||||| |||||| ||||||||| |
|
|
| T |
34486483 |
aataattattcctattatttattcaaaaatagagtttgattcgcagcggagagtgtaaaataaaa-ctttgctattaatataagaattctcccacaagat |
34486581 |
T |
|
| Q |
294 |
ttaggataccacgttgactcataacaaacataattcacattt-cacttccctaaaaattacaataatattaacattgaatcctttgcttttgaaaatact |
392 |
Q |
| |
|
||||||||| || |||||||||| |||||||| ||||||| ||||||| | ||||||| || |||||||| || |||||||||||||||||||||||| |
|
|
| T |
34486582 |
ttaggatacaacattgactcatagcaaacatagttcacatagacacttccttgaaaattataacaatattaatatcgaatcctttgcttttgaaaatact |
34486681 |
T |
|
| Q |
393 |
ttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
|||||||| ||||||||||||| || |||| | |||| |||||||||||| |||| || || |||||||||| |||||||| |
|
|
| T |
34486682 |
ttcttttacatcatagaaaatggttttcttgcataaaagtaaataagtaagtatatcccttttctagtgtcactatcagagc |
34486763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 200 - 474
Target Start/End: Original strand, 7847344 - 7847618
Alignment:
| Q |
200 |
tattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaagatttagga |
299 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || | ||| ||||||||||||||||| || | |||||||| |||| |||||||||||||| || |
|
|
| T |
7847344 |
tattactattatttattcaaaaattgagtaatattcgtaacggggagtgtcaaataaaaactttcaaactaatataagaatttttccacaagatttaaga |
7847443 |
T |
|
| Q |
300 |
taccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctttgcttttgaaaatactttctttt |
399 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
7847444 |
taccacattgactcatagcaaacataattcacatttcacttccttgaaaattataataatattaacaccgaatctttttcttttgaaaatactttctttt |
7847543 |
T |
|
| Q |
400 |
aaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
| |||||| | |||| || |||| ||||||||||||||||||||||||| || || | ||||||| |||||||| |
|
|
| T |
7847544 |
acatcataaacaatggttttcttatacaaaactaaataagtaagcatatcccttttcccgtgtcactatcagagc |
7847618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 192 - 474
Target Start/End: Complemental strand, 27122886 - 27122611
Alignment:
| Q |
192 |
aaaataattattactattatttattcaaaaa--taaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccaca |
289 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||| || | |||| ||||||||||||||||||| || |||| ||||||| |||||| ||||| |
|
|
| T |
27122886 |
aaaataattattactattatttataaaaaaaaatagagtttaattctcagcagagagtgtcaaataaaaactttcctataaatataagaattctcccaca |
27122787 |
T |
|
| Q |
290 |
agatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctttgcttttgaaaat |
389 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||| || || |
|
|
| T |
27122786 |
agatttaggataccacattgactcataacaaacataattcacatttcacttctttgaaaatta---------taacatcgaatcctttgcttttcaatat |
27122696 |
T |
|
| Q |
390 |
actttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
||||||||||| | |||||||||| || |||| ||||||||||||||||||||||||| || |||| ||| |||| |||||||| |
|
|
| T |
27122695 |
actttcttttacaacatagaaaatagttttcttgtacaaaactaaataagtaagcatatccctttcccagtttcactatcagagc |
27122611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 178 - 474
Target Start/End: Complemental strand, 31495694 - 31495397
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattc-aaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataa |
276 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||| |||| ||||| | |||||||| | | || || | |||||||||||||| ||||||||||||||| |
|
|
| T |
31495694 |
caccctaagtcccaaaaataaatattactattattcattcgaaaaacagagtttgattcacggcagaaaatgtcaaataaaaacttttctattaatataa |
31495595 |
T |
|
| Q |
277 |
aaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctt |
376 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||| || |
|
|
| T |
31495594 |
gaattcttttgcaagatttaggatatcacattgactcataacaaacataattcaaatttcccttccttgaaaattattataatattaacattgaatcttt |
31495495 |
T |
|
| Q |
377 |
tgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| | ||||||| |||| ||||||| ||||||||||||||||| || || | ||||||| |||||||| |
|
|
| T |
31495494 |
tgcttttgaaaataatttctattacatcacaagcaatgattttcttgtacaaaattaaataagtaagcatatcccttttcccgtgtcactatcagagc |
31495397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 178 - 474
Target Start/End: Complemental strand, 31501080 - 31500783
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattc-aaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataa |
276 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||| |||| ||||| | |||||||| | | || || | |||||||||||||| ||||||||||||||| |
|
|
| T |
31501080 |
caccctaagtcccaaaaataaatattactattattcattcgaaaaacagagtttgattcacggcagaaaatgtcaaataaaaacttttctattaatataa |
31500981 |
T |
|
| Q |
277 |
aaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctt |
376 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||| || |
|
|
| T |
31500980 |
gaattcttttgcaagatttaggatatcacattgactcataacaaacataattcaaatttcccttccttgaaaattattataatattaacattgaatcttt |
31500881 |
T |
|
| Q |
377 |
tgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| | ||||||| |||| ||||||| ||||||||||||||||| || || | ||||||| |||||||| |
|
|
| T |
31500880 |
tgcttttgaaaataatttctattacatcacaagcaatgattttcttgtacaaaattaaataagtaagcatatcccttttcccgtgtcactatcagagc |
31500783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 178 - 474
Target Start/End: Complemental strand, 31475858 - 31475561
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattc-aaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataa |
276 |
Q |
| |
|
|||||||| | |||||||||| ||||||||| ||| |||| ||||| | |||||||| | | || || | |||||||||||||| ||||||||||||||| |
|
|
| T |
31475858 |
caccctaagtcccaaaaataaatattactataattcattcgaaaaacagagtttgattcacggcagaaaatgtcaaataaaaacttttctattaatataa |
31475759 |
T |
|
| Q |
277 |
aaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctt |
376 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||| || |
|
|
| T |
31475758 |
gaattcttctgcaagatttaggatatcagattgactcataacaaacataattcaaatttcccttccttgaaaattattataatattaacattgaatcttt |
31475659 |
T |
|
| Q |
377 |
tgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| | ||||||| |||| ||||||| ||||||||||||||||| || || | ||||||| |||||||| |
|
|
| T |
31475658 |
tgcttttgaaaataatttctattacatcacaagcaatgattttcttgtacaaaattaaataagtaagcatatcccttttcccgtgtcactatcagagc |
31475561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 178 - 474
Target Start/End: Complemental strand, 31515584 - 31515286
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattc-aaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataa |
276 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||| |||| ||||| | |||||||| | | || || | |||||||||||||| ||||||||||||||| |
|
|
| T |
31515584 |
caccctaagtcccaaaaataaatattactattattcattcgaaaaacatagtttgattcacggcagaaaatgtcaaataaaaacttttctattaatataa |
31515485 |
T |
|
| Q |
277 |
aaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctt |
376 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||||| || |
|
|
| T |
31515484 |
gaattcttttgcaagatttaggatatcacattgactcataacaaacataattcaaatttcccttccttgaaaattattataatattaacattgaatcttt |
31515385 |
T |
|
| Q |
377 |
tgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaact-aaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| | ||||||| |||| ||||||| | ||| |||||||||||| || || | ||||||| |||||||| |
|
|
| T |
31515384 |
tgcttttgaaaataatttctattacatcacaagcaatgattttcttgtacaaaattaaaaaaagtaagcatatcccttttcccgtgtcactatcagagc |
31515286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 199 - 474
Target Start/End: Complemental strand, 22397548 - 22397272
Alignment:
| Q |
199 |
ttattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctt-tctattaatataaaaattcttccacaagatttag |
297 |
Q |
| |
|
|||||||||||||||| | ||||||| | | ||| ||||||| | ||||||||||||||| || |||| | ||||| |||||||||| ||||||||| |
|
|
| T |
22397548 |
ttattactattatttaattaaaaatataactcgattcgcagcgcaaagtgtcaaataaaaattttctctaatgatatatgaattcttccataagatttag |
22397449 |
T |
|
| Q |
298 |
gataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctttgcttttgaaaatactttctt |
397 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||| ||| ||||| ||||||||||||||||||| ||| |
|
|
| T |
22397448 |
gatatcacgttgaaacataacaaacataattcagatttcacttcattaaaaattataataatattatcatcgaatcttttgcttttgaaaatacttgctt |
22397349 |
T |
|
| Q |
398 |
ttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
||| |||||||| || | || |||| |||||||| |||||||||||||||| || || | ||||||| |||||||| |
|
|
| T |
22397348 |
ttacatcatagacaaaggttttcttgtacaaaacgaaataagtaagcatatcccttttcccgtgtcactatcagagc |
22397272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 178 - 474
Target Start/End: Original strand, 8885019 - 8885308
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| || |||||||| |||||||| ||||| ||| ||||||||||||| ||| || |||||||| |
|
|
| T |
8885019 |
caccctaaatcctaaaaataattattactattattcatccaaaaatagagtttgattcgcag----gagggtcaaataaaaacttttttaataatataag |
8885114 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcataacaaacataat-tcacatttcacttccctaaaaattacaataatattaacattgaatcctt |
376 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| |||||||||||||| || | |||||||||| | ||||||| ||| |||||||||| |||| || |
|
|
| T |
8885115 |
aattcttccacaagatttaggatatcac----acttataacaaacataatatcgc-tttcacttccttgaaaattataatcatattaacatcaaatcttt |
8885209 |
T |
|
| Q |
377 |
tgcttttgaaaa-tactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc |
474 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||| |||| || | || ||||||| ||||||||||||||||||| ||| || ||||||| || ||||| |
|
|
| T |
8885210 |
tgcttttcaaaaatactttcttttacatcatagacaatggtttttttgtacaaaattaaataagtaagcatattctctttctcgtgtcactattagagc |
8885308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 178 - 474
Target Start/End: Complemental strand, 17863394 - 17863093
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | ||||||| |||| ||| ||||||||| || |||| ||||||| | |||| ||||||| |
|
|
| T |
17863394 |
caccctaaatcccaaaaataattattactattatttaattaaaaatagagttcgattcgcagcggaaagagtcagctaaaaacttctctaataatatagg |
17863295 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatccttt |
377 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||| ||||||| | |||||||||||||| ||||| ||| |
|
|
| T |
17863294 |
aattcttccacaagatttaggatatcacattgactcataacaaacataattcagacttcacttcattaaaaatcataataatattaacatcgaatctttt |
17863195 |
T |
|
| Q |
378 |
gcttttgaaaatactttcttttaaatcatagaaaatgattctcttt-----tacaaaactaaataagtaagcatattcccttcctagtgtcaccatcaga |
472 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| || | ||| |||||||| |||||||||||||||| || || | |||||||||||||| |
|
|
| T |
17863194 |
gcttttgaaaatactttcttttacatcatagtcaatggttttttttttttgtacaaaacgaaataagtaagcatatcccttttcccgtgtcaccatcaga |
17863095 |
T |
|
| Q |
473 |
gc |
474 |
Q |
| |
|
|| |
|
|
| T |
17863094 |
gc |
17863093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 178 - 448
Target Start/End: Complemental strand, 11284240 - 11283976
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||| |||| | || |||||||||||||||| ||| | |||||||| |
|
|
| T |
11284240 |
caccccaaatcccaaaaataattattactatgatttatttaaaaataaagtttgattcgcatcagaaagtgtcaaataaaaacttttatgataatataag |
11284141 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatccttt |
377 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||||||| ||||||| || ||||||||||| | ||||||| |||||||| ||||||||||| ||| |
|
|
| T |
11284140 |
aattcttccacaaaatttaggatatcacattgactca------acataatacaaatttcacttccttgaaaattataataatatgaacattgaatctttt |
11284047 |
T |
|
| Q |
378 |
gcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatat |
448 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| |||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
11284046 |
gcttatgaaaatactttcttttacatcatagacaatggtttccttgtacaaaactaaataagtaagcatat |
11283976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 178 - 448
Target Start/End: Original strand, 141185 - 141456
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | ||||||| |||||||| ||||||||| ||||| | |||||||| |||||| ||||||| |
|
|
| T |
141185 |
caccctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgttagataaaaacttttctaataatatagg |
141284 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatccttt |
377 |
Q |
| |
|
||||||||||||| |||||| ||| ||| |||||||||||||||||||||||| | |||||||| ||||||| | ||||| ||| |||| ||||| ||| |
|
|
| T |
141285 |
aattcttccacaaaatttagtatatcacattgactcataacaaacataattcagacttcacttcattaaaaatcataataacattgacatcgaatctttt |
141384 |
T |
|
| Q |
378 |
gctttt-gaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatat |
448 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| |||| || | || |||||||| |||||||||||||||| |
|
|
| T |
141385 |
gcttttaaaaaatactttcttttacatcatagtcaatgttttttttgtacaaaacgaaataagtaagcatat |
141456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1043 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: scaffold1043
Description:
Target: scaffold1043; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 178 - 448
Target Start/End: Complemental strand, 2565 - 2293
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | ||||||| |||||||| ||||||||| ||||| | |||||||| | |||| ||||||| |
|
|
| T |
2565 |
caccctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcagcggaaagtgttagataaaaacttctctaataatatagg |
2466 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatccttt |
377 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||| | |||||||| ||||||| | ||||| ||||| || ||||| ||| |
|
|
| T |
2465 |
aattcttccacaagatttaggatatcacattgactcgtaacaaacataattcagacttcacttcattaaaaatcataataacattaaaatcgaatctttt |
2366 |
T |
|
| Q |
378 |
gcttttgaaaatactttcttttaaatcatagaaaatgattctcttt--tacaaaactaaataagtaagcatat |
448 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||| || | ||| ||||||| |||||||||||||||| |
|
|
| T |
2365 |
gcttttgaaaatactttcttttacatcatggtcaatggtttttttttgtacaaaatgaaataagtaagcatat |
2293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 120; Significance: 5e-61; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 178 - 443
Target Start/End: Complemental strand, 19258 - 18989
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattc-aaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataa |
276 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||| | |||||||||||||| | ||||||||| ||| |
|
|
| T |
19258 |
caccttaaatcccaaaaataattattactattatttattcgaaaaacagagtttgattcgcagcggaaaatgtcaaataaaaacttgtctattaatttaa |
19159 |
T |
|
| Q |
277 |
aaattcttccacaagatttaggataccacgttgactcataacaaa---cataattcacatttcacttccctaaaaattacaataatattaacattgaatc |
373 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||||| |||| ||| |||||||||||||||||||| | |||||| |||| ||| ||||| |||| |
|
|
| T |
19158 |
gaattcttccacaaaatttaggatatcacattgacttataaaaaaaaccataattcacatttcacttctttgaaaattgtaatactatcaacatcaaatc |
19059 |
T |
|
| Q |
374 |
ctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaag |
443 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| |||| || |||| |||||||||||||||||||| |
|
|
| T |
19058 |
ttttgcttttgaaaatactctcttttacatcatagataatggttatcttgtacaaaactaaataagtaag |
18989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 5e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 178 - 367
Target Start/End: Complemental strand, 16075077 - 16074888
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaa |
277 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| | ||||||| |||||||| |||| |||| ||||||| |||||||| | |||| ||||||| |
|
|
| T |
16075077 |
caccctaaatcccaaaaataattattactattatttaattaaaaatagagtttgattcgcaacggaaagtgtcagataaaaacttctctaataatatagg |
16074978 |
T |
|
| Q |
278 |
aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacat |
367 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
16074977 |
aattcttccacaagatttaggatatcacattgactcataacaaacataactcagatttcacttcattaaaaattataataatattaacat |
16074888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 198 - 445
Target Start/End: Complemental strand, 3090394 - 3090147
Alignment:
| Q |
198 |
attattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaagatttag |
297 |
Q |
| |
|
||||||| ||||||| ||| |||| | |||||||| || |||||| | ||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
3090394 |
attattattattattcatttgaaaaaagagtttgattcgtagcggaaaatgtcaaataaattt-tttctattaatatatgaattcttccacaagatttag |
3090296 |
T |
|
| Q |
298 |
gata--ccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctttgcttttgaaaatactttc |
395 |
Q |
| |
|
|||| ||| ||||||||||| |||||||||||||| ||||| | |||||| |||| ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
3090295 |
gatataccatattgactcataatgt-cataattcacattttacttctttgaaaattgtaatactattaacatcaaatcttttgcttttgaaaatactttc |
3090197 |
T |
|
| Q |
396 |
ttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagca |
445 |
Q |
| |
|
||||| |||||||| |||| || |||| |||||||||||||||||||||| |
|
|
| T |
3090196 |
ttttacatcatagataatggttatcttgtacaaaactaaataagtaagca |
3090147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 47300392 - 47300341
Alignment:
| Q |
84 |
atttcattaatcaaaatatgttcaatacaaattagtatatcaactaaaatct |
135 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
47300392 |
atttcattaatcaaaacgtgttcaatacaatttagtatttcaaccaaaatct |
47300341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 4648392 - 4648422
Alignment:
| Q |
83 |
catttcattaatcaaaatatgttcaatacaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4648392 |
catttcattaatcaaaatatgttcaatacaa |
4648422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 194 - 470
Target Start/End: Complemental strand, 60459 - 60185
Alignment:
| Q |
194 |
aataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaatataaaaattcttccacaagat |
293 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| || |||||||||||||| |||||||| | || |||| ||||||| |||||| | |||||| |
|
|
| T |
60459 |
aataattattcctattatttattcaaaaatagagtttaatttgcagcggagagtgtaaaataaaa-ctttgctatgaatataagaattctccttcaagat |
60361 |
T |
|
| Q |
294 |
ttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctttgcttttgaaaa-tact |
392 |
Q |
| |
|
|||||| |||| ||||||||||| |||||||| |||||| | || | ||||||| |||||||||||||| ||||||||||||||| |||| |||| |
|
|
| T |
60360 |
ttaggacaccaaattgactcataataaacataactcacata--aacaccttgaaaattataataatattaacatcgaatcctttgcttttaaaaaatact |
60263 |
T |
|
| Q |
393 |
ttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatca |
470 |
Q |
| |
|
|||||||| ||||||||||||| || |||| |||||| |||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
60262 |
ttcttttacatcatagaaaatggttttcttacacaaaagtaaataagtaagtatatccccttcctagtgtcactatca |
60185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 20842447 - 20842353
Alignment:
| Q |
178 |
caccctaaattccaaaaataattattactattatttattcaaaaataaagtttgatccgcagcggagagtgtcaaataaaaacctttctattaat |
272 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20842447 |
caccctaaatcccataaataattatcactattatttattcaaaaagagagtttgattcgcagcggagagtgtcaaataaaaacttttctattaat |
20842353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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