View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2653_high_8 (Length: 449)
Name: NF2653_high_8
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_high_8 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 25657771 - 25658190
Alignment:
| Q |
20 |
ggtataacatgctttagttaatatagtttgttagaattgttcaaaattattaaatcttaatgttaatatatttatgattaaaaaatttacaagactgtac |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
|
|
| T |
25657771 |
ggtataacatgctctagttaatatagtttgttagaatcgttcaaaattattaaatcttaatgttaatatatttatgattgaaaaatttacaacattgtac |
25657870 |
T |
|
| Q |
120 |
tcattttaattgtagctgaggcatacggattaccatttttgccggcatatatgaatgtcaacaatagccaagcagacatgaagaaaggagtaaattttgc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25657871 |
tcattttaattgtagctgaggcatacggattaccatttttgccggcatatatgaatgtcaacaatagccaagtagacatgaagaaaggagtaaattttgc |
25657970 |
T |
|
| Q |
220 |
attttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcattgagtgtgcaatttgagtggttt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25657971 |
attttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcattgagtgtacaatttgagtggttt |
25658070 |
T |
|
| Q |
320 |
aagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactcgctacatattttgtttgttttaaatatataaatatttctcatgaaata |
419 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
25658071 |
aagaaactaaagtcattcatgtgtaaaagcaaaaaaggtttcattataactccctacatattttgtttgttttaaatatataaatcttcctcatgaaata |
25658170 |
T |
|
| Q |
420 |
acacaacttttgttatgatg |
439 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
25658171 |
acacaatttttgttatgatg |
25658190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 25664176 - 25664595
Alignment:
| Q |
20 |
ggtataacatgctttagttaatatagtttgttagaattgttcaaaattattaaatcttaatgttaatatatttatgattaaaaaatttacaagactgtac |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
|
|
| T |
25664176 |
ggtataacatgctctagttaatatagtttgttagaatcgttccaaattattaaatcttaatgttaatatatttatgattgaaaaatttacaacattgtac |
25664275 |
T |
|
| Q |
120 |
tcattttaattgtagctgaggcatacggattaccatttttgccggcatatatgaatgtcaacaatagccaagcagacatgaagaaaggagtaaattttgc |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25664276 |
tcattttaattgtagctgaggcatatggattaccatttttgccggcatatatgaatgtcaacaatagccaagaagacatgaagaaaggagtaaattttgc |
25664375 |
T |
|
| Q |
220 |
attttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcattgagtgtgcaatttgagtggttt |
319 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25664376 |
attttcaggtgctagtgcacttaaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcattgagtgtgcaatttgagtggttt |
25664475 |
T |
|
| Q |
320 |
aagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactcgctacatattttgtttgttttaaatatataaatatttctcatgaaata |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
25664476 |
aagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactccctacatattttgtttgttttaaatatataaatcttcctcatgaaata |
25664575 |
T |
|
| Q |
420 |
acacaacttttgttatgatg |
439 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
25664576 |
acacaatttttgttatgatg |
25664595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 25670581 - 25671000
Alignment:
| Q |
20 |
ggtataacatgctttagttaatatagtttgttagaattgttcaaaattattaaatcttaatgttaatatatttatgattaaaaaatttacaagactgtac |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
|
|
| T |
25670581 |
ggtataacatgctctagttaatatagtttgttagaatcgttccaaattattaaatcttaatgttaatatatttatgattgaaaaatttacaacattgtac |
25670680 |
T |
|
| Q |
120 |
tcattttaattgtagctgaggcatacggattaccatttttgccggcatatatgaatgtcaacaatagccaagcagacatgaagaaaggagtaaattttgc |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25670681 |
tcattttaattgtagctgaggcatatggattaccatttttgccggcatatatgaatgtcaacaatagccaagaagacatgaagaaaggagtaaattttgc |
25670780 |
T |
|
| Q |
220 |
attttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcattgagtgtgcaatttgagtggttt |
319 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25670781 |
attttcaggtgctagtgcacttaaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcattgagtgtgcaatttgagtggttt |
25670880 |
T |
|
| Q |
320 |
aagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactcgctacatattttgtttgttttaaatatataaatatttctcatgaaata |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
25670881 |
aagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactccctacatattttgtttgttttaaatatataaatcttcctcatgaaata |
25670980 |
T |
|
| Q |
420 |
acacaacttttgttatgatg |
439 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
25670981 |
acacaatttttgttatgatg |
25671000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 25676986 - 25677405
Alignment:
| Q |
20 |
ggtataacatgctttagttaatatagtttgttagaattgttcaaaattattaaatcttaatgttaatatatttatgattaaaaaatttacaagactgtac |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
|
|
| T |
25676986 |
ggtataacatgctctagttaatatagtttgttagaatcgttccaaattattaaatcttaatgttaatatatttatgattgaaaaatttacaacattgtac |
25677085 |
T |
|
| Q |
120 |
tcattttaattgtagctgaggcatacggattaccatttttgccggcatatatgaatgtcaacaatagccaagcagacatgaagaaaggagtaaattttgc |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25677086 |
tcattttaattgtagctgaggcatatggattaccatttttgccggcatatatgaatgtcaacaatagccaagaagacatgaagaaaggagtaaattttgc |
25677185 |
T |
|
| Q |
220 |
attttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcattgagtgtgcaatttgagtggttt |
319 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25677186 |
attttcaggtgctagtgcacttaaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcattgagtgtgcaatttgagtggttt |
25677285 |
T |
|
| Q |
320 |
aagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactcgctacatattttgtttgttttaaatatataaatatttctcatgaaata |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
25677286 |
aagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactccctacatattttgtttgttttaaatatataaatcttcctcatgaaata |
25677385 |
T |
|
| Q |
420 |
acacaacttttgttatgatg |
439 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
25677386 |
acacaatttttgttatgatg |
25677405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 25683660 - 25684079
Alignment:
| Q |
20 |
ggtataacatgctttagttaatatagtttgttagaattgttcaaaattattaaatcttaatgttaatatatttatgattaaaaaatttacaagactgtac |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
|
|
| T |
25683660 |
ggtataacatgctctagttaatatagtttgttagaatcgttccaaattattaaatcttaatgttaatatatttatgattgaaaaatttacaacattgtac |
25683759 |
T |
|
| Q |
120 |
tcattttaattgtagctgaggcatacggattaccatttttgccggcatatatgaatgtcaacaatagccaagcagacatgaagaaaggagtaaattttgc |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25683760 |
tcattttaattgtagctgaggcatatggattaccatttttgccggcatatatgaatgtcaacaatagccaagaagacatgaagaaaggagtaaattttgc |
25683859 |
T |
|
| Q |
220 |
attttcaggtgctagtgcacttgaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcattgagtgtgcaatttgagtggttt |
319 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25683860 |
attttcaggtgctagtgcacttaaaaagatttatttcgctcgtcgtggaatcatagaaccacaaacagatcattcattgagtgtgcaatttgagtggttt |
25683959 |
T |
|
| Q |
320 |
aagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactcgctacatattttgtttgttttaaatatataaatatttctcatgaaata |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
25683960 |
aagaaactaaagccattcatgtgtaaaagcaaaaaaggtttcattataactccctacatattttgtttgttttaaatatataaatcttcctcatgaaata |
25684059 |
T |
|
| Q |
420 |
acacaacttttgttatgatg |
439 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
25684060 |
acacaatttttgttatgatg |
25684079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 27228539 - 27228609
Alignment:
| Q |
121 |
cattttaattgtagctgaggcatacggattaccatttttgccggcatatatgaatgtcaacaatagccaag |
191 |
Q |
| |
|
||||||| ||||||| ||||||||||| || |||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
27228539 |
cattttatttgtagccgaggcatacgggttgccatttttgccggcctataagaatgtcaacaaaagccaag |
27228609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 13003846 - 13003790
Alignment:
| Q |
119 |
ctcattttaattgtagctgaggcatacggattaccatttttgccggcatatatgaat |
175 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||||||| ||||| |||| |||| |
|
|
| T |
13003846 |
ctcattttaattgtagctgaggcatatgggttgccatttttaccggcctataagaat |
13003790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 31251740 - 31251796
Alignment:
| Q |
119 |
ctcattttaattgtagctgaggcatacggattaccatttttgccggcatatatgaat |
175 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||||||| ||||| |||| |||| |
|
|
| T |
31251740 |
ctcattttaattgtagctgaggcatatgggttgccatttttaccggcctataagaat |
31251796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 16162458 - 16162527
Alignment:
| Q |
122 |
attttaattgtagctgaggcatacggattaccatttttgccggcatatatgaatgtcaacaatagccaag |
191 |
Q |
| |
|
||||||| | |||||||||||||||| || |||||||||||||| | | | ||||||| ||| ||||||| |
|
|
| T |
16162458 |
attttaaatatagctgaggcatacgggttgccatttttgccggcctctttaaatgtcaccaaaagccaag |
16162527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 16162635 - 16162699
Alignment:
| Q |
296 |
ttgagtgtgcaatttgagtggtttaagaaactaaagccattcatgtgtaaaagcaaaaaaggttt |
360 |
Q |
| |
|
||||||||||||||||| |||||||| || | ||| || || |||||||||||||| ||||||| |
|
|
| T |
16162635 |
ttgagtgtgcaatttgactggtttaaaaatcaaaaacccttattgtgtaaaagcaaagaaggttt |
16162699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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