View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2653_low_1 (Length: 790)
Name: NF2653_low_1
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 41 - 351
Target Start/End: Complemental strand, 51526420 - 51526101
Alignment:
| Q |
41 |
cattacaatatgaaaggattggtattcaaacctcgga-tttgaaaaa-gggaaaaagaaggtcgattgattatacctgctctctggtgaacttagtaatt |
138 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51526420 |
cattacaatatgaaaggattggtattcgaacctcagaatttgaaaaatgggaaaaagaaggtcgattgattatacctgctctctggtgaacttagcaatt |
51526321 |
T |
|
| Q |
139 |
attaatgctactcttgttttacttggatctgctccgaaatgaatgaattagagtatcactcttcacttc----------tagctctcgttgagtcacaaa |
228 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51526320 |
att---gctactcttgttttacttggatctgctccgaaatgaatgaattagagtatcactcttcacttcacttcacttctagctctcgttgagtcacaaa |
51526224 |
T |
|
| Q |
229 |
atgcgcgctgctagcttaatccaaaaaacatgacataatatatttgtagttataggggaggtgcattgcaagtgacgctttggtgaggttataggttacg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51526223 |
atgcgcgctgctagcttaatccaaaaaacatgacataatatgtttgtagttataggggaggtgcattgcaagtgacgctttggtgaggttataggttacg |
51526124 |
T |
|
| Q |
329 |
ttactcatttaaaagccggtgga |
351 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
51526123 |
ttactcatttaaaagccggtgga |
51526101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 573 - 774
Target Start/End: Complemental strand, 51525913 - 51525712
Alignment:
| Q |
573 |
agtaaatggatccttatttgccgtatcagcaggctttgagtttactaatgccaacattttcatagtttttgggagacagaaagcataagttgaaagaacc |
672 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51525913 |
agtatatggatccttatttgccgtatcagcaggctttgagtttactaatgccaacattttcatagtttttgggagacagaaagcataagttgaaagaacc |
51525814 |
T |
|
| Q |
673 |
ttgcaatcaatcaaacaacattttaattcttgatgcaatgatgacaatgggagtatcattgttcatttagcgcaaaatatatggttctcctagtgtccaa |
772 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51525813 |
ttgcaatcaatcaaacaacattttaattcttgatgcaatgatgacaatgggagtatcattgttcatttagcgcaaaatatatggttctcctagtgtccaa |
51525714 |
T |
|
| Q |
773 |
gt |
774 |
Q |
| |
|
|| |
|
|
| T |
51525713 |
gt |
51525712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University