View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2653_low_10 (Length: 419)
Name: NF2653_low_10
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 81 - 297
Target Start/End: Original strand, 41785532 - 41785748
Alignment:
| Q |
81 |
cattatgttaccatctcttttcattacagaggtttttcactgtgtaactgatgacgattgtccaaaaccagtgaaccatttaagaaatgtcaagtgcact |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| | |
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| T |
41785532 |
cattatgttaccatctcttttcattacagaggtttttcagcgtgtaactgatgacggttgtccaaaacctgtgaaccatttaagagttgtcaagtgcatt |
41785631 |
T |
|
| Q |
181 |
gaacacatatgtgagtatggttataattatcgccctgattttgcatcccagattccagagagtacaaaaatgccccgtaaaagagaatgagttattatcc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785632 |
gaacacatatgtgagtatggttataattatcgccctgattttgcatcccagattccagagagtacaaaaatgccccgtaaaagagaatgagttattatcc |
41785731 |
T |
|
| Q |
281 |
aagaagcttaaaaataa |
297 |
Q |
| |
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||||||||||||||||| |
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| T |
41785732 |
aagaagcttaaaaataa |
41785748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 81 - 393
Target Start/End: Original strand, 41779971 - 41780281
Alignment:
| Q |
81 |
cattatgttaccatctcttttcattacagaggtttttcactgtgtaactgatgacgattgtccaaaaccagtgaaccatttaagaaatgtcaagtgcact |
180 |
Q |
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|
|||||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||| | |||||| | ||||||||| | |
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| T |
41779971 |
cattatgttatcatctcttttcattacagcgcattttccgtgtgtaactgatgacgattgtccaaaacctgtgaacaagttaagagttatcaagtgcatt |
41780070 |
T |
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| Q |
181 |
gaacacatatgtgagtatggttataattatcgccctgattttgcatcccagattccagagagtacaaaaatgccccgtaaaagagaatgagttattatcc |
280 |
Q |
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| T |
41780071 |
gatcacatatgtcagtatgctcgtaat---ctccctgattttgcgtctgagatctcagagagtacaaaaatgccctgcaaaggagaatgatttattgtcc |
41780167 |
T |
|
| Q |
281 |
aagaagcttaaa-aataaatgtgaaatataccttatgatagaatatttcaaaagatgtcatctaaatattgtatggatacccaaaaaagttattattttt |
379 |
Q |
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|||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| ||||| |||||||||||| |
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| T |
41780168 |
aagaagctaaaataataaatgtaaaatataccttatgatagaatattccaaaagatgtcatttaaatattgtatgggtaccaaaaaaggttattattttt |
41780267 |
T |
|
| Q |
380 |
tcttttcctaactt |
393 |
Q |
| |
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|||||||||||||| |
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| T |
41780268 |
tcttttcctaactt |
41780281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 289 - 397
Target Start/End: Original strand, 41786738 - 41786846
Alignment:
| Q |
289 |
taaaaataaatgtgaaatataccttatgatagaatatttcaaaagatgtcatctaaatattgtatggatacccaaaaaagttattattttttcttttcct |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41786738 |
taaaaataaatgtgaaatataccttatgatagaatatttcaaaagatgtcatctaaatattgtatggatacccaaaaaagttattattttttcttttcct |
41786837 |
T |
|
| Q |
389 |
aacttcagg |
397 |
Q |
| |
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||||||||| |
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|
| T |
41786838 |
aacttcagg |
41786846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 81 - 353
Target Start/End: Original strand, 41791389 - 41791663
Alignment:
| Q |
81 |
cattatgttaccatctcttttcattacagaggtttttcactgtgtaactgatgacgattgtccaaaaccagtgaaccatttaagaaatgtcaagtgcact |
180 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||| ||||||| ||||||||||||||||||| | ||||| | ||| || | ||||||||| | |
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| T |
41791389 |
cattatgttatcatctcttttcattacagaacatattcaatgtgtaattgatgacgattgtccaaaatctttgaacaagttattaattatcaagtgcatt |
41791488 |
T |
|
| Q |
181 |
gaacacatatgtgagtatggttataattatcgccctgattttgcatcccagattccagagagtacaaaaatgccccgtaaaagagaatgagttattatcc |
280 |
Q |
| |
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| || ||||| |||||| | |||| | ||||||||||||||||||||| ||| ||||||| ||||||||| ||| |||||||||||||| ||| |
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| T |
41791489 |
aatcatgtatgtcagtatgttggtaat---ctccctgattttgcatcccagatcccaaagagtacgaaaatgccctacaaaggagaatgagttattgtcc |
41791585 |
T |
|
| Q |
281 |
aagaagcttaa--aaataaatgtg-aaatataccttatgatag--aatatttcaaaagatgtcatctaaatattgtat |
353 |
Q |
| |
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|||||||| || ||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||| |
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| T |
41791586 |
aagaagctaaaataaataaatgtgaaaatataccttatgataggagatattccaaaagatgtcatttaaatattgtat |
41791663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 25952832 - 25952795
Alignment:
| Q |
289 |
taaaaataaatgtgaaatataccttatgatagaatatt |
326 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||| |
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| T |
25952832 |
taaaaataaatgtgaaatataccttgtgataaaatatt |
25952795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 390
Target Start/End: Complemental strand, 1681232 - 1681134
Alignment:
| Q |
290 |
aaaaataaatgtgaaatataccttatgatagaatatttcaaaagatgtcatctaaatattgtatggatacccaaaaaagttattattttttcttttccta |
389 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| | || ||||| ||||||| |||||||||||||| ||||||| || ||| | ||||||||||||||| |
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| T |
1681232 |
aaaaataaatgtgaaatatgcct-atgatagatttttccaaaatatgtcatttaaatattgtatgggcacccaaataa-ttaattttttttcttttccta |
1681135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 15584237 - 15584286
Alignment:
| Q |
291 |
aaaataaatgtgaaatataccttatgatagaatatttcaaaagatgtcat |
340 |
Q |
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||||||||||| |||||| ||||||||||||||||||| ||||||||| |
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| T |
15584237 |
aaaataaatgtacaatatatcttatgatagaatatttcatgagatgtcat |
15584286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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