View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2653_low_12 (Length: 388)
Name: NF2653_low_12
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 55824491 - 55824119
Alignment:
| Q |
1 |
agtggaaaataaaaggtaccttaatatgattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggtaataggccgcccatgctt |
100 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824491 |
agtggaaactaaaaggtaccttaatgtgattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggtaataggccgcccatgctt |
55824392 |
T |
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| Q |
101 |
ctttgatgcagaaggctacaaccatatcacgggtcagaagaagagaacaaaaaggtcaaataataggttaaatatgaagactctaaatactaatactaac |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824391 |
ctttgatgcagaaggctacaaccatatcatgggtcagaagaagagaacaaaaaggtcaaataataggttaaatatgaagactctaaatactaatactaac |
55824292 |
T |
|
| Q |
201 |
caatattacacaatcgcgatattcattcatttgaatgtgagactgcacataataatggacctgcaatcatacaaataggaaataaagcacagaagattga |
300 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824291 |
caatatgacacgatcgcgatattcattcatttgaatgtgagactgcacataataatggacctgcaatcatacaaataggaaataaagcacagaagattga |
55824192 |
T |
|
| Q |
301 |
gt-aatagatagtgctccaacaaaaagcaacatccctttttgtttttgaaatgattaaacttactgatgcttt |
372 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824191 |
gtaaatagatagtgctccaacaaaaagcaacatccctttttgtttttgaaatgattaaacttactgatgcttt |
55824119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 56152961 - 56153331
Alignment:
| Q |
1 |
agtggaaaataaaaggtaccttaatatgattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggtaataggccgcccatgctt |
100 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56152961 |
agtggaaactaaaaggtaccttaatgtgattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggtaataggccgcccatgctt |
56153060 |
T |
|
| Q |
101 |
ctttgatgcagaaggctacaaccatatcacgggtcagaagaagagaacaaaaaggtcaaataataggttaaatatgaagactctaaatactaatactaac |
200 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
56153061 |
ctttgatgcggaaggctacagccatatcacgggtcagaagaagagaacaaaaaggtcaaataataggttaaatatgaagactctaaataataatactcac |
56153160 |
T |
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| Q |
201 |
caatattacacaatcgcgatattcattcatttgaatgtgagactgcacataataatggacctgcaatcatacaaataggaaataaagcacagaagattga |
300 |
Q |
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| T |
56153161 |
caagattacacgatcgcgatattcattcatttgaatgtgagactgcacataataatggacctgcaatcatacaaataggaaat-aagcacagaagattga |
56153259 |
T |
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| Q |
301 |
gtaatagatagtgctccaacaaaaagcaacatccctttttgtttttgaaatgattaaacttactgatgcttt |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
56153260 |
gtaatagatagtgctccaacaaaaagcaacatccctttttgtttttgaaatgattaaacttaccgatgcttt |
56153331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 56150490 - 56150598
Alignment:
| Q |
1 |
agtggaaaataaaaggtaccttaatatgattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggtaataggccgcccatgctt |
100 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56150490 |
agtggaaactaaaaggtaccttaatgtgattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggtaataggccgcccatgctt |
56150589 |
T |
|
| Q |
101 |
ctttgatgc |
109 |
Q |
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||||||||| |
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| T |
56150590 |
ctttgatgc |
56150598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 9888214 - 9888317
Alignment:
| Q |
17 |
taccttaatatgattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggtaataggccgcccatgcttctttgatgcagaaggc |
116 |
Q |
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||||||||| ||||||| ||| || |||||||| ||||||||||| |||||||| ||||| | |||||||| || ||||||||||| |||||||||||| |
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| T |
9888214 |
taccttaatctgattcagggctgacagcttcagaccagtcatatccaaaaccttcacacatgttgtaatagggcgaccatgcttcttcgatgcagaaggc |
9888313 |
T |
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| Q |
117 |
taca |
120 |
Q |
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|||| |
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| T |
9888314 |
taca |
9888317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 266
Target Start/End: Original strand, 9888421 - 9888488
Alignment:
| Q |
199 |
accaatattacacaatcgcgatattcattcatttgaatgtgagactgcacataataatggacctgcaa |
266 |
Q |
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| T |
9888421 |
accaagattacacgatcacgatattcattaatttgaatgtgagactgaacataataatggacctgcaa |
9888488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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