View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2653_low_18 (Length: 302)

Name: NF2653_low_18
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2653_low_18
NF2653_low_18
[»] chr6 (4 HSPs)
chr6 (1-167)||(16498179-16498345)
chr6 (37-167)||(9756850-9756980)
chr6 (14-128)||(28493746-28493860)
chr6 (14-128)||(29806155-29806269)
[»] chr2 (3 HSPs)
chr2 (1-167)||(7026834-7027000)
chr2 (1-167)||(35297125-35297291)
chr2 (1-167)||(14688652-14688818)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-167)||(14061-14227)
[»] chr8 (2 HSPs)
chr8 (1-167)||(29259266-29259432)
chr8 (1-172)||(13821417-13821585)
[»] chr3 (4 HSPs)
chr3 (1-167)||(49147659-49147825)
chr3 (87-171)||(43367782-43367866)
chr3 (71-156)||(4325870-4325958)
chr3 (29-164)||(18409419-18409554)
[»] chr1 (2 HSPs)
chr1 (1-167)||(44093943-44094109)
chr1 (6-167)||(45516372-45516533)
[»] chr7 (1 HSPs)
chr7 (11-167)||(42128508-42128664)
[»] chr5 (1 HSPs)
chr5 (1-167)||(31112065-31112231)
[»] chr4 (3 HSPs)
chr4 (4-144)||(25109405-25109545)
chr4 (39-145)||(19149843-19149949)
chr4 (59-142)||(24156568-24156651)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 16498345 - 16498179
Alignment:
Q  1 caaccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcct 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  16498345 caaccttcatcactcactcagagagggaaatcagtatgcagactttatggctaaacttggagcatcgagcgatgttgaattgactctccactcttctcct 16498246  T
Q  101 ccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
    ||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||||    
T  16498245 ccagaggacctgctgcctccgcttaggacagatgaattaggagtcctctttatgaggcgctagcctc 16498179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 9756980 - 9756850
Alignment:
Q  37 tgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcctccagaggacttgctgcctctgcttaggacgggtgaa 136  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||| ||||    
T  9756980 tgcagactttatggctaaatttggagcatcgagcgatgttgaattgactctccactcttctccttcataggacatgctgcctcttcttaggacggatgaa 9756881  T
Q  137 ttaggagtcctctttatgagacgctagcctc 167  Q
    |||||||||||||||||||| || |||||||    
T  9756880 ttaggagtcctctttatgaggcgatagcctc 9756850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 28493746 - 28493860
Alignment:
Q  14 tcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcctccagaggacttgc 113  Q
    ||||||||||| || ||||||| ||| |||||| |||| ||  || |||| ||||||||||  || ||| || |||||||||| ||||||||| || |||    
T  28493746 tcactcagagaaggcaatcagtgtgccgactttctggccaagcttcgagcttcgaatgatgacgagttgtctatccactcttcacctccagagaacctgc 28493845  T
Q  114 tgcctctgcttagga 128  Q
    |||||||||||||||    
T  28493846 tgcctctgcttagga 28493860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 29806155 - 29806269
Alignment:
Q  14 tcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcctccagaggacttgc 113  Q
    ||||||||||| || ||||||| ||| |||||| |||| ||  || |||| ||||||||||  || ||| || |||||||||| ||||||||| || |||    
T  29806155 tcactcagagaaggcaatcagtgtgccgactttctggccaagcttcgagcttcgaatgatgacgagttgtctatccactcttcacctccagagaacctgc 29806254  T
Q  114 tgcctctgcttagga 128  Q
    |||||||||||||||    
T  29806255 tgcctctgcttagga 29806269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 7027000 - 7026834
Alignment:
Q  1 caaccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcct 100  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  7027000 caaccttcatcactcactcagagagggaaatcagtgtgcaaactttatggctaaacttggagcatcgagcgatgttgaattgactctccactcttctcct 7026901  T
Q  101 ccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  7026900 ccagaggacctgctgcctctgcttaggacggatgaattaggagtcctctttatgaggcgctagcctc 7026834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 35297125 - 35297291
Alignment:
Q  1 caaccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcct 100  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  35297125 caaccttcatcactcactcagagagggaaatcagtgtgcagactttatggctaaacttggagcatcgagcgatgttgaattgactctccactcttctcct 35297224  T
Q  101 ccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
     |||||||| ||||||||||||||||||||| |||||||||||| ||||||||||  ||||||||||    
T  35297225 tcagaggacctgctgcctctgcttaggacggatgaattaggagttctctttatgaagcgctagcctc 35297291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 14688652 - 14688818
Alignment:
Q  1 caaccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcct 100  Q
    ||||||||| ||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  14688652 caaccttcatcactcactcagagagggaaatcaatgtgcaaactttatggctaaacttggagcatcgagcgatgttgaattgactctccactcttctcct 14688751  T
Q  101 ccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
    | ||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||    
T  14688752 ctagaggacctgctgcctctggttaggacggatgaattaggagtcctctttatgaggcgctagcctc 14688818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 14061 - 14227
Alignment:
Q  1 caaccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcct 100  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  14061 caaccttcatcactcactcagagagggaaatcagtgtgcagactttatggctaaacttggagcatcgagcgatgttgaattgactctccactcttctcct 14160  T
Q  101 ccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
    ||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  14161 ccaaaggacatgcagcctctgcttaggacggatgaattaggagtcctctttatgaggcgctagcctc 14227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 29259266 - 29259432
Alignment:
Q  1 caaccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcct 100  Q
    ||||||||| ||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  29259266 caaccttcatcactcactcagagagggaaattagtgtgtagactttatggctaaacttggagcatcgagcgatgttgaattgactctccactcttctcct 29259365  T
Q  101 ccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
    ||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  29259366 ccaaaggacatgccgcctctgcttaggacggatgaattaggagtcctctttatgaggcgctagcctc 29259432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 13821417 - 13821585
Alignment:
Q  1 caaccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcct 100  Q
    ||||||||| || ||||||| |||||||||||||| |||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  13821417 caaccttcatcaatcactcatagagggaaatcagtgtgcgaactttatggctaaatt-ggagcatcgaatgatgttgaattgactctccactcttctccg 13821515  T
Q  101 ccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctcgtttc 172  Q
      ||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||| ||||    
T  13821516 --agaggacctgctgcctctgcttaggacgaatgaattaggagtcatctttatgagacgctagcctcttttc 13821585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 49147825 - 49147659
Alignment:
Q  1 caaccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcct 100  Q
    |||| |||| |||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||||||| |||||||||    
T  49147825 caacattcatcactcacttagagagggaaatcagtgtgcagactttatggctaaaattggagcatcgagcgatgttgaattgactctccaatcttctcct 49147726  T
Q  101 ccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||    
T  49147725 ccagaggacctgctgcctctgcttaggacggatgaattaggagtcctctttatgaggcactagcctc 49147659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 43367782 - 43367866
Alignment:
Q  87 tccactcttctcctccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctcgttt 171  Q
    |||||||||| |||||| ||||| |||| |||||||||||||||| |||| |||||||  | |||||||| ||||||||||||||    
T  43367782 tccactcttcacctccaaaggacctgctacctctgcttaggacggatgaactaggagttgtttttatgaggcgctagcctcgttt 43367866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 4325870 - 4325958
Alignment:
Q  71 gatgttgaattgactctccact---cttctcctccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgag 156  Q
    |||||| |||||||||||||||   ||||| |||||||||| |||||| |||| ||||||| |  ||||||||||||||||||||||||    
T  4325870 gatgttaaattgactctccactactcttcttctccagaggatttgctgtctctacttaggatgaatgaattaggagtcctctttatgag 4325958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 18409554 - 18409419
Alignment:
Q  29 aatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcctccagaggacttgctgcctctgcttagga 128  Q
    ||||||| ||| || || |||||||| || ||||| |||| ||||||||| |||||  |||| ||||| |||||||||||  | || |||||| | |||     
T  18409554 aatcagtgtgcggatttcatggctaagttaggagcttcgattgatgttgatttgacaatccattcttcccctccagaggatcttctccctctgttaaggt 18409455  T
Q  129 cgggtgaattaggagtcctctttatgagacgctagc 164  Q
    ||| ||||||||||  ||| ||||| || |||||||    
T  18409454 cggatgaattaggaaccctttttattaggcgctagc 18409419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 44093943 - 44094109
Alignment:
Q  1 caaccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcct 100  Q
    ||||||||| |||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||  ||| ||||||||||| ||||||||||||||    
T  44093943 caaccttcatcactcattcagagagggaaatcagtgtgcaaactttatggctaaacttggagcatcgagcgatattgaattgactttccactcttctcct 44094042  T
Q  101 ccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  44094043 ccagaggacctgctgcctctgcttaggacggatgatttaggagtcctctttatgaggcgctagcctc 44094109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 45516533 - 45516372
Alignment:
Q  6 ttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcctccaga 105  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||    
T  45516533 ttcatcactcactcagagagggaaatcagcatgcgaactttatggctaaacatggagcatcgaatgatgttgaattgactctccactcttctcctcgaga 45516434  T
Q  106 ggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
    |||| | ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  45516433 ggacctactgcctctgcttaggacggatgaattaggagtcctttttatgaggcgctagcctc 45516372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 42128508 - 42128664
Alignment:
Q  11 cactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcctccagaggact 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||  |||||||||||||| ||||||||||||| ||||||||||     
T  42128508 cactcactcagagagggaaatcagtgtgcagactttatggctaaacttggagtatcgagcgatgttgaattgaccctccactcttctcttccagaggacc 42128607  T
Q  111 tgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  42128608 tgctgcctctgcttaggacagatgaattaggagtcctctttatgaggcgctagcctc 42128664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 31112231 - 31112065
Alignment:
Q  1 caaccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcct 100  Q
    ||||||||| || ||| |||||||||||||||| | |||| |||||||||||||| ||||||||||||  |||||||||||||||||||||| |||||||    
T  31112231 caaccttcatcattcattcagagagggaaatcactgtgcatactttatggctaaacttggagcatcgagcgatgttgaattgactctccactattctcct 31112132  T
Q  101 ccagaggacttgctgcctctgcttaggacgggtgaattaggagtcctctttatgagacgctagcctc 167  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  31112131 ccagaggacctgctgccgctgcttaggacggatgaattaggagtcctctttatgaggcgctagcctc 31112065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 144
Target Start/End: Complemental strand, 25109545 - 25109405
Alignment:
Q  4 ccttcaccactcactcagagagggaaatcagtatgcagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcctcca 103  Q
    ||||||||| || |||||||| || ||||||| ||| || |||| | | ||| || |||| ||||||||||| || ||| || | ||||||||| || ||    
T  25109545 ccttcaccattcgctcagagaaggcaatcagtgtgcggattttaggaccaaacttagagcctcgaatgatgtcgagttgtctattcactcttcttcttca 25109446  T
Q  104 gaggacttgctgcctctgcttaggacgggtgaattaggagt 144  Q
    |||||| | |||||||| || | ||||| ||||||||||||    
T  25109445 gaggacctactgcctctactcaagacggatgaattaggagt 25109405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 145
Target Start/End: Complemental strand, 19149949 - 19149843
Alignment:
Q  39 cagactttatggctaaatttggagcatcgaatgatgttgaattgactctccactcttctcctccagaggacttgctgcctctgcttaggacgggtgaatt 138  Q
    ||||||||||||| ||  ||||||  |||||||||||| |  || |  | |||||||||||||| |||||| || |||||||||| ||||| | ||||||    
T  19149949 cagactttatggccaagcttggagtttcgaatgatgttaagctgtccattcactcttctcctccggaggacctgttgcctctgctaaggacagatgaatt 19149850  T
Q  139 aggagtc 145  Q
    |||||||    
T  19149849 aggagtc 19149843  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 24156651 - 24156568
Alignment:
Q  59 ggagcatcgaatgatgttgaattgactctccactcttctcctccagaggacttgctgcctctgcttaggacgggtgaattagga 142  Q
    ||||| || ||||||||||| ||| |  ||||||||||||| || |||||| ||||||||||| | | ||||| ||||||||||    
T  24156651 ggagcttctaatgatgttgagttgtccatccactcttctccgccggaggacctgctgcctctgttaaagacggatgaattagga 24156568  T

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