View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2653_low_22 (Length: 270)
Name: NF2653_low_22
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 4678675 - 4678423
Alignment:
| Q |
1 |
caatggattctaccgatcgacctttattcagcatggtgattttcactataactaataataatagttaatgatcataaaatgcatgttgcacatactatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4678675 |
caatggattctaccgatcgacctttattcagcatggtgattttcactataactaataata---gttaatgatcataaaatgcatgttgcacatactatac |
4678579 |
T |
|
| Q |
101 |
tagtaatgaatgctgaaatgattataaaagctagttaacaattaatgtggaattatgaagcctgattcaatgtgaaacatctcataccttgtttcccata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4678578 |
tagtaatgaatgctgaaatgattataaaagctagttaacaattaatgtggaattatgaagcctgattcaatgtgaaacatctcataccttgtttcccata |
4678479 |
T |
|
| Q |
201 |
tagcccataagaccaactccaacaggtgaaactttcaaattattaatgtgtcttct |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4678478 |
tagcccataagaccaactccaacaggtgaaactttcaaattattaatgtgtcttct |
4678423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 40776811 - 40776866
Alignment:
| Q |
185 |
taccttgtttcccatatagcccataagaccaactccaacaggtgaaactttcaaat |
240 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40776811 |
taccttgtttcccatgtatcccataagaccaactccaacaggagaaactttcaaat |
40776866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 40770099 - 40770154
Alignment:
| Q |
185 |
taccttgtttcccatatagcccataagaccaactccaacaggtgaaactttcaaat |
240 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
40770099 |
taccttgtttcccatgtagcccataagaccaacaccaacttgagaaactttcaaat |
40770154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University