View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2653_low_23 (Length: 260)

Name: NF2653_low_23
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2653_low_23
NF2653_low_23
[»] chr7 (21 HSPs)
chr7 (13-260)||(15167979-15168226)
chr7 (13-260)||(18873164-18873411)
chr7 (13-260)||(10895795-10896042)
chr7 (13-260)||(14422789-14423035)
chr7 (13-260)||(16009382-16009627)
chr7 (13-260)||(12709848-12710095)
chr7 (13-260)||(13122919-13123166)
chr7 (25-260)||(13743526-13743759)
chr7 (68-260)||(16677152-16677346)
chr7 (68-260)||(17651388-17651582)
chr7 (56-260)||(12590648-12590850)
chr7 (56-260)||(13007281-13007482)
chr7 (209-260)||(11382875-11382926)
chr7 (209-260)||(11389352-11389403)
chr7 (209-260)||(20311056-20311107)
chr7 (209-260)||(21230964-21231015)
chr7 (145-260)||(13679428-13679544)
chr7 (208-259)||(46625961-46626012)
chr7 (210-260)||(2971254-2971304)
chr7 (210-260)||(11311059-11311109)
chr7 (210-260)||(20906466-20906516)
[»] chr3 (22 HSPs)
chr3 (13-260)||(14762762-14763009)
chr3 (15-260)||(38310804-38311049)
chr3 (32-260)||(20247793-20248021)
chr3 (25-260)||(24192771-24193007)
chr3 (13-260)||(9534133-9534378)
chr3 (13-260)||(23370510-23370756)
chr3 (13-260)||(55499106-55499353)
chr3 (13-260)||(24933833-24934077)
chr3 (56-260)||(41455102-41455304)
chr3 (96-260)||(16801472-16801635)
chr3 (203-260)||(18929239-18929296)
chr3 (200-260)||(17240517-17240577)
chr3 (210-260)||(13302245-13302295)
chr3 (210-260)||(13323792-13323842)
chr3 (151-260)||(10389448-10389557)
chr3 (151-260)||(10414537-10414646)
chr3 (151-260)||(10421207-10421316)
chr3 (210-260)||(12033449-12033499)
chr3 (210-260)||(13312901-13312951)
chr3 (210-260)||(17131732-17131782)
chr3 (210-260)||(51301589-51301639)
chr3 (208-260)||(16801027-16801079)
[»] chr5 (11 HSPs)
chr5 (13-260)||(22750945-22751192)
chr5 (13-260)||(28370059-28370304)
chr5 (13-260)||(38144541-38144786)
chr5 (13-260)||(19512191-19512437)
chr5 (56-260)||(23528479-23528681)
chr5 (200-260)||(18407948-18408008)
chr5 (200-260)||(23111204-23111264)
chr5 (209-260)||(22438752-22438803)
chr5 (210-260)||(19236900-19236950)
chr5 (212-260)||(22461158-22461206)
chr5 (212-260)||(22467782-22467830)
[»] scaffold0026 (2 HSPs)
scaffold0026 (13-260)||(11855-12102)
scaffold0026 (13-260)||(111491-111736)
[»] chr6 (24 HSPs)
chr6 (31-260)||(23057760-23057989)
chr6 (13-260)||(23839003-23839249)
chr6 (13-260)||(29614151-29614398)
chr6 (13-260)||(10986185-10986431)
chr6 (29-260)||(4477678-4477908)
chr6 (13-260)||(18800242-18800488)
chr6 (13-260)||(21565216-21565462)
chr6 (130-260)||(930100-930229)
chr6 (56-260)||(12168212-12168413)
chr6 (56-260)||(19287121-19287322)
chr6 (56-260)||(19785874-19786075)
chr6 (56-260)||(19878305-19878506)
chr6 (56-257)||(19884081-19884279)
chr6 (76-260)||(34639991-34640173)
chr6 (76-260)||(34646665-34646847)
chr6 (151-260)||(25469709-25469816)
chr6 (68-260)||(9187352-9187546)
chr6 (209-257)||(24512851-24512899)
chr6 (208-260)||(25348486-25348538)
chr6 (208-260)||(25598643-25598695)
chr6 (181-260)||(31252394-31252473)
chr6 (208-260)||(25397172-25397224)
chr6 (208-260)||(2286771-2286823)
chr6 (208-260)||(19471339-19471391)
[»] scaffold1773 (1 HSPs)
scaffold1773 (13-260)||(983-1228)
[»] scaffold0006 (1 HSPs)
scaffold0006 (13-260)||(49984-50229)
[»] chr4 (11 HSPs)
chr4 (13-260)||(8045837-8046083)
chr4 (10-260)||(11847908-11848164)
chr4 (76-260)||(53483573-53483755)
chr4 (209-260)||(15408139-15408190)
chr4 (75-259)||(27906130-27906315)
chr4 (208-260)||(8834895-8834947)
chr4 (208-260)||(13888641-13888693)
chr4 (181-260)||(14486632-14486711)
chr4 (208-259)||(22724691-22724742)
chr4 (208-260)||(15245215-15245267)
chr4 (208-259)||(15308120-15308171)
[»] scaffold0029 (1 HSPs)
scaffold0029 (56-260)||(111728-111933)
[»] scaffold0025 (1 HSPs)
scaffold0025 (25-260)||(14400-14635)
[»] chr8 (14 HSPs)
chr8 (13-260)||(8727737-8727984)
chr8 (13-260)||(44477428-44477673)
chr8 (13-260)||(44492586-44492831)
chr8 (13-260)||(23866418-23866665)
chr8 (13-173)||(27940946-27941104)
chr8 (56-260)||(17054440-17054641)
chr8 (155-260)||(18614217-18614323)
chr8 (200-260)||(23482057-23482117)
chr8 (208-260)||(39364919-39364971)
chr8 (210-260)||(29643390-29643440)
chr8 (209-260)||(14056568-14056619)
chr8 (209-260)||(25111976-25112027)
chr8 (210-260)||(24320675-24320725)
chr8 (208-260)||(21931696-21931748)
[»] scaffold0924 (1 HSPs)
scaffold0924 (13-260)||(755-1002)
[»] chr2 (16 HSPs)
chr2 (13-260)||(19661458-19661703)
chr2 (13-260)||(6483523-6483768)
chr2 (13-260)||(6486990-6487235)
chr2 (68-260)||(26583687-26583877)
chr2 (13-260)||(23089059-23089305)
chr2 (13-260)||(23878813-23879058)
chr2 (13-260)||(23101467-23101713)
chr2 (11-260)||(5706028-5706274)
chr2 (200-260)||(23265133-23265193)
chr2 (200-260)||(23280201-23280261)
chr2 (203-260)||(21908353-21908410)
chr2 (208-260)||(24661576-24661628)
chr2 (210-260)||(10577-10627)
chr2 (210-260)||(25180934-25180984)
chr2 (84-260)||(23168303-23168483)
chr2 (84-260)||(23579560-23579740)
[»] chr1 (12 HSPs)
chr1 (13-260)||(20437028-20437274)
chr1 (56-260)||(41111884-41112085)
chr1 (200-260)||(32651563-32651623)
chr1 (200-256)||(18712790-18712846)
chr1 (209-260)||(19663521-19663572)
chr1 (208-260)||(10811787-10811839)
chr1 (208-260)||(20805320-20805372)
chr1 (209-260)||(11158093-11158144)
chr1 (210-260)||(20851137-20851187)
chr1 (210-260)||(20857764-20857814)
chr1 (210-260)||(21706276-21706326)
chr1 (210-260)||(21710818-21710868)
[»] scaffold0553 (1 HSPs)
scaffold0553 (13-260)||(10200-10446)
[»] scaffold0544 (1 HSPs)
scaffold0544 (13-260)||(1530-1776)
[»] scaffold0117 (2 HSPs)
scaffold0117 (13-260)||(1902-2148)
scaffold0117 (13-260)||(8579-8825)
[»] scaffold0247 (1 HSPs)
scaffold0247 (13-260)||(11146-11392)
[»] scaffold0058 (1 HSPs)
scaffold0058 (25-260)||(109-341)
[»] scaffold0090 (1 HSPs)
scaffold0090 (13-260)||(17973-18220)
[»] scaffold0476 (1 HSPs)
scaffold0476 (13-260)||(3297-3544)
[»] scaffold0154 (1 HSPs)
scaffold0154 (68-260)||(30715-30908)
[»] scaffold0077 (1 HSPs)
scaffold0077 (13-260)||(3626-3872)
[»] scaffold0796 (2 HSPs)
scaffold0796 (74-260)||(1737-1920)
scaffold0796 (74-260)||(5760-5943)
[»] scaffold0634 (1 HSPs)
scaffold0634 (13-105)||(3466-3558)
[»] scaffold0456 (4 HSPs)
scaffold0456 (182-260)||(904-982)
scaffold0456 (182-260)||(8049-8127)
scaffold0456 (25-121)||(806-901)
scaffold0456 (25-121)||(7951-8046)
[»] scaffold0129 (1 HSPs)
scaffold0129 (153-260)||(45279-45386)
[»] scaffold0222 (1 HSPs)
scaffold0222 (200-260)||(16811-16871)
[»] scaffold0004 (1 HSPs)
scaffold0004 (200-260)||(116887-116947)
[»] scaffold0461 (1 HSPs)
scaffold0461 (200-260)||(12-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (200-260)||(13623-13683)
[»] scaffold0020 (1 HSPs)
scaffold0020 (200-260)||(101932-101992)
[»] scaffold0310 (1 HSPs)
scaffold0310 (209-260)||(17643-17694)
[»] scaffold0107 (1 HSPs)
scaffold0107 (209-260)||(40536-40587)
[»] scaffold0019 (1 HSPs)
scaffold0019 (209-260)||(135473-135524)
[»] scaffold0235 (1 HSPs)
scaffold0235 (211-260)||(22597-22646)
[»] scaffold0124 (1 HSPs)
scaffold0124 (209-260)||(34280-34331)
[»] scaffold0317 (1 HSPs)
scaffold0317 (145-260)||(1321-1437)
[»] scaffold0138 (1 HSPs)
scaffold0138 (208-260)||(12296-12348)
[»] scaffold0609 (1 HSPs)
scaffold0609 (181-260)||(5862-5941)
[»] scaffold0139 (1 HSPs)
scaffold0139 (209-260)||(15001-15052)
[»] scaffold0261 (1 HSPs)
scaffold0261 (75-260)||(23574-23760)
[»] scaffold0096 (1 HSPs)
scaffold0096 (208-260)||(39511-39563)
[»] scaffold0815 (1 HSPs)
scaffold0815 (213-260)||(1453-1500)
[»] scaffold0001 (1 HSPs)
scaffold0001 (193-260)||(493033-493099)
[»] scaffold1318 (1 HSPs)
scaffold1318 (210-260)||(1917-1967)
[»] scaffold0348 (1 HSPs)
scaffold0348 (210-260)||(9336-9386)
[»] scaffold0127 (1 HSPs)
scaffold0127 (210-260)||(10239-10289)
[»] scaffold0023 (1 HSPs)
scaffold0023 (210-260)||(135438-135488)
[»] scaffold0335 (1 HSPs)
scaffold0335 (208-260)||(2632-2684)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 15167979 - 15168226
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  15167979 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 15168078  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168079 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 15168178  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  15168179 tttcagaaattatagattatgattatcgagagatagtctcacccttac 15168226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 18873164 - 18873411
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  18873164 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 18873263  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18873264 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 18873363  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  18873364 tttcagaaattatagattatgattatcgagagaaagtctcacccttac 18873411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 10896042 - 10895795
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  10896042 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 10895943  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactatgcaattaggtcaa 211  Q
    ||||||| |||||||||||||| | |||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  10895942 attacaagagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 10895844  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10895843 ttttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 14422789 - 14423035
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||     
T  14422789 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattac 14422887  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 211  Q
    |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14422888 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 14422986  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14422987 ttttcagaaattatagattatgattattgagagatagtctcacccttac 14423035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 16009382 - 16009627
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| ||||||| |||||||||||| |||||  |||||||||||||||||||| |||||||     
T  16009382 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcagtttatgatcacaacaacagtatagattaagttttcattctaaacattac 16009480  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  16009481 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccttaacccacaatttatcttccaaaaccatgcaattaggtcaat 16009579  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16009580 tttcagaaattatagattatgattattgagagatagtctcacccttac 16009627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 12710095 - 12709848
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataa-ttctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacatta 111  Q
    |||||||||||||||||||||||||||||||| ||||||| |||  ||||| |||| |||||||||||||||| |||||||||||  |||||||||||||    
T  12710095 catcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaaca-agattaagtttatattctgaacatta 12709997  T
Q  112 tattacaac-agaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtca 210  Q
    ||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12709996 tattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtca 12709897  T
Q  211 attttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    | |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  12709896 a-tttcaggaattataaattatgattattgagagatagtctcacccttac 12709848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 13123166 - 13122919
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataa-ttctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacatta 111  Q
    |||||||||||||||||||||||||||||||| ||||||| |||  ||||| |||| |||||||||||||||| |||||||||||  |||||||||||||    
T  13123166 catcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaaca-agattaagtttatattctgaacatta 13123068  T
Q  112 tattacaac-agaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtca 210  Q
    ||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13123067 tattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtca 13122968  T
Q  211 attttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    | |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  13122967 a-tttcaggaattataaattatgattattgagagatagtctcacccttac 13122919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 13743526 - 13743759
Alignment:
Q  25 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaa 124  Q
    ||||||||||| |||||| |   ||||||| |||| ||||||||||||||||||| |||||||||||||| |||| ||||||||  ||| ||||| | ||    
T  13743526 attcatcaatttatccaaccaagcataatt-tcaaccaatttatgatcacagcaataacatagattaagtcttcaatctgaacagcataatacaagaaaa 13743624  T
Q  125 ttaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaatta 224  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  13743625 ttaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaatta 13743723  T
Q  225 tagattatgattattgagagatagtctcacccttac 260  Q
    || |||||||||||||||||||||||||||||||||    
T  13743724 taaattatgattattgagagatagtctcacccttac 13743759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 68 - 260
Target Start/End: Original strand, 16677152 - 16677346
Alignment:
Q  68 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 167  Q
    ||||||||||||||  |||||||| |  |||||||||||||| |  |||||||| | |||||||||| ||||| |  | | | ||| |||||||||||||    
T  16677152 tgatcacagcaacattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaa 16677251  T
Q  168 ccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16677252 ccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttac 16677346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 68 - 260
Target Start/End: Original strand, 17651388 - 17651582
Alignment:
Q  68 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 167  Q
    ||||||||||||||  |||||||| |  |||||||||||||| |  |||||||| | |||||||||| ||||| |  | | | ||| |||||||||||||    
T  17651388 tgatcacagcaacattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaa 17651487  T
Q  168 ccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17651488 ccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttac 17651582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 12590850 - 12590648
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || ||||||||||||| ||||||| ||||||||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  12590850 tcaatcaattaatggattacagcaacaacatggattaagctttcattcttaacattaaattccaagaaaactaacatcatctttactcatt--ccatcag 12590753  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12590752 aatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 12590654  T
Q  255 ccttac 260  Q
    ||||||    
T  12590653 ccttac 12590648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 13007281 - 13007482
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  13007281 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 13007377  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13007378 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 13007476  T
Q  255 ccttac 260  Q
    ||||||    
T  13007477 ccttac 13007482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 11382926 - 11382875
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttac 11382875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 11389403 - 11389352
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttac 11389352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 20311107 - 20311056
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttac 20311056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 21231015 - 21230964
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttac 21230964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 13679428 - 13679544
Alignment:
Q  145 ttcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgaga 243  Q
    |||| |||| ||||| |||||||||||||  |||| ||| ||| || | ||| ||  |||||| |||||||||| |||||||| || ||||| ||||| |    
T  13679428 ttcctttcaaaatcagcatcaaaccctaattctcagttttatcatcaagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaa 13679527  T
Q  244 gatagtctcacccttac 260  Q
    |||||||||||||||||    
T  13679528 gatagtctcacccttac 13679544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 46625961 - 46626012
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 259  Q
    ||||||||| ||||||||| ||||| || |||||||| ||||||||||||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcaccctta 46626012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 2971254 - 2971304
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttac 2971304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 11311059 - 11311109
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||| ||||||| || | ||| |||||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttac 11311109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 20906516 - 20906466
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttac 20906466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 14763009 - 14762762
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  14763009 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 14762910  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14762909 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 14762810  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  14762809 tttcagaaattatagattatgattatcgagagatagtctcacccttac 14762762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 38311049 - 38310804
Alignment:
Q  15 tcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatat 114  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  38311049 tcatacacaaattcatccattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatat 38310950  T
Q  115 tacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattt 214  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38310949 tacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatat 38310850  T
Q  215 tcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  38310849 tcagaaattatagattatgattatcgagagatagtctcacccttac 38310804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 32 - 260
Target Start/End: Complemental strand, 20248021 - 20247793
Alignment:
Q  32 aattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacat 131  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||||    
T  20248021 aattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagaaaattaacat 20247922  T
Q  132 gattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagatta 231  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20247921 gatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagatta 20247822  T
Q  232 tgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||    
T  20247821 tgattattgagagatagtctcacccttac 20247793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 24192771 - 24193007
Alignment:
Q  25 attcatcaattcatccaatcgctcataattctcaatcaatttatgat-cacagcaacaacatagattaagttttcattctgaacattatattacaacaga 123  Q
    ||||||||||| ||||||||  ||||| || ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||    
T  24192771 attcatcaatttatccaatcaatcatattt-tcaatcagtttatgattcacagcaacagcatagattaagttttcattctgaacatcacattacaacaga 24192869  T
Q  124 attaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactatgcaattaggtcaattttcagaaat 222  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24192870 attaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaat 24192969  T
Q  223 tatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24192970 tatagattatgattattgagagatagtctcacccttac 24193007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 9534133 - 9534378
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||  |||||  |||||||||||||||||||| |||||||     
T  9534133 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacgacaacagtatagattaagttttcattctaaacattac 9534231  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    |||||||||||||||||||||| | |||||||| | || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9534232 attacaacagaattaacatgatcaatacccattccact-cagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 9534330  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9534331 tttcagaaattatagattatgattattgagagatagtctcacccttac 9534378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 23370756 - 23370510
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  23370756 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 23370658  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 211  Q
    |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  23370657 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 23370559  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23370558 ttttcagaaattatagattatgattattgagagatagtcccacccttac 23370510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 55499353 - 55499106
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| || || ||||||||||||||||  | ||| || |||||||||||||||||||||||||   |||||||||| |||||||| |||||| |     
T  55499353 catcatacaaaacttgatcaattcatccaatcaattatattt-tcaatcaatttatgatcacagcaactgtatagattaagatttcattccgaacatcac 55499255  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaa 211  Q
    ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||| | |||   || ||| |||||||||    
T  55499254 attacaacataattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcagttaggtcaa 55499157  T
Q  212 tttt-cagaaattatagattat-gattattgagagatagtctcacccttac 260  Q
    |||| | ||||||| | |||||  |||| ||||||||||||||||||||||    
T  55499156 ttttcccgaaattacatattatctattaatgagagatagtctcacccttac 55499106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 24934077 - 24933833
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacatta 111  Q
    ||||||||| | |||||||||||||| ||||   ||| || | |||||||||| ||| ||  |||||||||||| ||||||| ||||||||| |||||||    
T  24934077 catcatacaaatattcatcaattcatacaatacatcaaaaat-tcaatcaattaatggattgcagcaacaacatggattaagctttcattcttaacatta 24933979  T
Q  112 tattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaa 211  Q
     ||| | | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||   |||  |||| |||||||||||| ||||||||||||    
T  24933978 aattccgagaaaactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaa 24933881  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24933880 ttt-cagaaattatagattatgattattgagagatagtctcacccttac 24933833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 41455304 - 41455102
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || |||||||| | || ||||||| |||||||||  |||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  41455304 tcaatcaattcatggattacagcaaccatatggattaagatttcattcttgacattaaatttcaagaaaactaacatcatctttactcatt--ccatcag 41455207  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    |||||||||||| ||||||   |||   ||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41455206 aatcatcatcaatccctaattttcatcctattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 41455108  T
Q  255 ccttac 260  Q
    ||||||    
T  41455107 ccttac 41455102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 260
Target Start/End: Complemental strand, 16801635 - 16801472
Alignment:
Q  96 ttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaa 194  Q
    |||||||| ||||| | |||||| || | |||||||||| ||||| |  ||| | ||| |||||||||||| |||||||| ||||||| |||||| |||     
T  16801635 ttcattctaaacatcacattacagcatatttaacatgatcattacaccattctcctcaaaatcatcatcaa-ccctaaccttcaattttatcttcaaaag 16801537  T
Q  195 ctatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  16801536 ctaagcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcacccttac 16801472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 18929239 - 18929296
Alignment:
Q  203 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttac 18929296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 17240577 - 17240517
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttac 17240517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 13302295 - 13302245
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttac 13302245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 13323842 - 13323792
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttac 13323792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 10389557 - 10389448
Alignment:
Q  151 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    |||||||||||||||||||||||   |||  ||||  |  |||||||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10389557 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10389458  T
Q  251 tcacccttac 260  Q
     |||||||||    
T  10389457 ccacccttac 10389448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 10414646 - 10414537
Alignment:
Q  151 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    |||||||||||||||||||||||   |||  ||||  |  |||||||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10414646 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10414547  T
Q  251 tcacccttac 260  Q
     |||||||||    
T  10414546 ccacccttac 10414537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 10421316 - 10421207
Alignment:
Q  151 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    |||||||||||||||||||||||   |||  ||||  |  |||||||| ||||||| | | ||||||||||||||| ||||| || ||||| ||||| ||    
T  10421316 tcagaatcatcatcaaaccctaattttcatattattcttaaaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatc 10421217  T
Q  251 tcacccttac 260  Q
     |||||||||    
T  10421216 ccacccttac 10421207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 12033499 - 12033449
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttac 12033449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 13312951 - 13312901
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||| |||||| | |||||||||||||| ||||| ||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttac 13312901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 17131732 - 17131782
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttac 17131782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 51301589 - 51301639
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||| | |||||||||||||  ||||| ||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttac 51301639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 16801027 - 16801079
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||||||||||||    
T  16801027 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttac 16801079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 22750945 - 22751192
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  22750945 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 22751044  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22751045 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 22751144  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  22751145 tttcagaaattatagattatgattatcgagagaaagtctcacccttac 22751192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 28370304 - 28370059
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  ||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  28370304 catcatacaaatcttcatcaattcatcccatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 28370206  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
     ||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28370205 gttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 28370107  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28370106 tttcagaaattatagattatgattattgagagatagtctcacccttac 28370059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 38144786 - 38144541
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  || ||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  38144786 catcatacaaatcttcatcaattcatccaatcaatcgtaatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 38144688  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    ||||||| |||||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  38144687 attacaatagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaat 38144589  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38144588 tttcagaaattatagattatgattattgagagatagtctcacccttac 38144541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 19512191 - 19512437
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  19512191 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 19512289  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 211  Q
     |||||| |||||||||||||| | |||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19512290 gttacaatagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 19512388  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19512389 ttttcagaaattatagattatgattattgagagatagtctcacccttac 19512437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 23528479 - 23528681
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  23528479 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaaactaacatcatccttactcatt--ccatcag 23528576  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23528577 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 23528675  T
Q  255 ccttac 260  Q
    ||||||    
T  23528676 ccttac 23528681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 18408008 - 18407948
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttac 18407948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 23111264 - 23111204
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttac 23111204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 22438803 - 22438752
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttac 22438752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 19236900 - 19236950
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttac 19236950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 22461158 - 22461206
Alignment:
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttac 22461206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 22467782 - 22467830
Alignment:
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttac 22467830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 12102 - 11855
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  12102 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaacttatgatcacagcaacaacaaagattaagttttcattctgaagattat 12003  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  12002 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttattttccaaaactatgcaattaggtcaat 11903  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11902 tttcagaaattatagattatgattattgagagatagtctcacccttac 11855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 111491 - 111736
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  111491 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 111589  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  111590 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 111688  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  111689 tttcagaaattatagattatgattattgagagatagtctcacccttac 111736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 31 - 260
Target Start/End: Original strand, 23057760 - 23057989
Alignment:
Q  31 caattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaaca 130  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  23057760 caattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaaca 23057859  T
Q  131 tgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagatt 230  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23057860 tgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcaggaattatagatt 23057959  T
Q  231 atgattattgagagatagtctcacccttac 260  Q
    |||||||| |||||||||||||||||||||    
T  23057960 atgattatcgagagatagtctcacccttac 23057989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 23839003 - 23839249
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||     
T  23839003 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 23839101  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaa-actatgcaattaggtcaa 211  Q
    |||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23839102 attacaacagaattaacatgatcaatacccattcccctt-agaatcatcatcaaaccctaaccctcaatttatcttccaaacactatgcaattaggtcaa 23839200  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23839201 ttttcagaaattatagattatgattattgagagatagtctcacccttac 23839249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 29614398 - 29614151
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||||||||||||||||||||||||||  |||||| | |||||||| |||||||||||||||||||| |||||||||||||||||| ||||||      
T  29614398 catcatacacaaattcatcaattcatccaatcattcataaatttcaatcaagttatgatcacagcaacaacaaagattaagttttcattctaaacatt-c 29614300  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaattta-tcttccaaaactatgcaattaggtcaa 211  Q
    | ||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||    
T  29614299 aatacaagagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttttccaaaattatgcaactaggtcaa 29614200  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29614199 ttttcagaaattatagattatgattattgagagatagtctcacccttac 29614151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 10986431 - 10986185
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  || ||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||     
T  10986431 catcatacaaatcttcatcaattcatccaatcaatcgtaatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 10986333  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactatgcaattaggtcaa 211  Q
    |||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10986332 attacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 10986234  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  10986233 tttttagaaattatagattatgattattgaaagatagtctcacccttac 10986185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 29 - 260
Target Start/End: Original strand, 4477678 - 4477908
Alignment:
Q  29 atcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaa 128  Q
    ||||| ||||||||||  |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||     
T  4477678 atcaaatcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattag 4477776  T
Q  129 catgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatag 227  Q
    |||||| | |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4477777 catgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatag 4477875  T
Q  228 attatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||||    
T  4477876 attatgattattgagagatagtctcacccttac 4477908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 18800242 - 18800488
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||  || |||||||||||||||||||  | ||| || ||||||||||| |||||||| |||||| |||||||||| ||||||| ||||||| |     
T  18800242 catcataccaaacttcatcaattcatccaatcaattatattt-tcaatcaatttgtgatcacaacaacaatatagattaagatttcattttgaacatcac 18800340  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaattaggtcaa 211  Q
    |||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  18800341 attacaacagaattaacatgatcattactcatt-ccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaa 18800439  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18800440 ttttcagaaattatagattatgattattgagagatagtctcacccttac 18800488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 21565462 - 21565216
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| || |||||||||||||||||||  | ||| || ||||||||||||||||||||||||||  |||||||||| |||||||| |||| | |     
T  21565462 catcatacagaacttcatcaattcatccaatcaattatattt-tcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcac 21565364  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaa 211  Q
    ||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||| | |||   || |||||||||||||    
T  21565363 attacaacataattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcaattaggtcaa 21565266  T
Q  212 ttttcagaaattatagattat-gattattgagagatagtctcacccttac 260  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||||||||    
T  21565265 ttttccgaaattaaatattatctattaatgagagatagtctcacccttac 21565216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 930229 - 930100
Alignment:
Q  130 atgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagat 229  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||    
T  930229 atgatcattacccatt-cccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagat 930131  T
Q  230 tatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||    
T  930130 tatgattattgagagatagtctcacccttac 930100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 12168212 - 12168413
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  12168212 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 12168308  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12168309 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 12168407  T
Q  255 ccttac 260  Q
    ||||||    
T  12168408 ccttac 12168413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 19287121 - 19287322
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  19287121 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 19287217  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19287218 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19287316  T
Q  255 ccttac 260  Q
    ||||||    
T  19287317 ccttac 19287322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 260
Target Start/End: Complemental strand, 19786075 - 19785874
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  19786075 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 19785979  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    ||||||||||||||||||||  ||| ||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19785978 aatcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19785880  T
Q  255 ccttac 260  Q
    ||||||    
T  19785879 ccttac 19785874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 19878305 - 19878506
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  19878305 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 19878401  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19878402 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19878500  T
Q  255 ccttac 260  Q
    ||||||    
T  19878501 ccttac 19878506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 19884081 - 19884279
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  19884081 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 19884177  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19884178 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19884276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 76 - 260
Target Start/End: Complemental strand, 34640173 - 34639991
Alignment:
Q  76 gcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaacc 175  Q
    |||||||||| ||||||||||||||||| ||| ||| |||   | | || |||||| ||  |||| ||||  || |||||| ||||||||||||||||      
T  34640173 gcaacaacatggattaagttttcattcttaacgttaaattcagagaaaactaacatcatctttactcatt--ccatcagaaccatcatcaaaccctaatt 34640076  T
Q  176 ctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
     ||   |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34640075 ttcttattattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttac 34639991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 260
Target Start/End: Complemental strand, 34646847 - 34646665
Alignment:
Q  76 gcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaacc 175  Q
    |||||||||| ||||||||||||||||| ||| ||| |||   | | || |||||| ||  |||| ||||  || |||||| ||||||||||||||||      
T  34646847 gcaacaacatggattaagttttcattcttaacgttaaattcagagaaaactaacatcatctttactcatt--ccatcagaaccatcatcaaaccctaatt 34646750  T
Q  176 ctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
     ||   |||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34646749 ttcttattattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttac 34646665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 25469816 - 25469709
Alignment:
Q  151 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 250  Q
    ||||||| |||||||||||||||   |||  |||| ||||||||| || ||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  25469816 tcagaattatcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtc 25469719  T
Q  251 tcacccttac 260  Q
    ||||||||||    
T  25469718 tcacccttac 25469709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 260
Target Start/End: Original strand, 9187352 - 9187546
Alignment:
Q  68 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 167  Q
    |||||||| |||||  ||||||||||   |||||||||||| || ||||||||| | | ||||||||| ||||    |||| |||| ||||| ||||||     
T  9187352 tgatcacaacaacattatagattaagaaatcattctgaacactaaattacaacacattaaacatgattcttacatcattcctttcaaaatcagcatcaa- 9187450  T
Q  168 ccctaaccctcaattt--atcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||  | ||||||  || ||| | ||| || ||||||| || ||||| ||||||||||  |||| ||||||||||||||||||||||||||||    
T  9187451 ccctaattcccaatttttatattcaagaacaattcaattagatctatttttcagaaattatgtattaagattattgagagatagtctcacccttac 9187546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 24512899 - 24512851
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcaccct 257  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccct 24512851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 25348486 - 25348538
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttac 25348538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 25598643 - 25598695
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||| |||| |||||||| |||||||| |||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttac 25598695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 31252394 - 31252473
Alignment:
Q  181 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || ||| | ||||| ||||||||||||    
T  31252394 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttac 31252473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 25397172 - 25397224
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttac 25397224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 2286823 - 2286771
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||||||||||||    
T  2286823 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttac 2286771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 19471391 - 19471339
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||| |||||||| || ||||| ||| |||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttac 19471339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 983 - 1228
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  983 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaaca-agattaagttttcattctgaacattat 1081  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    ||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  1082 attacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa- 1180  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  1181 tttcaggaattatagattatgattattgagagatagtctcacccttac 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 49984 - 50229
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49984 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaaca-agattaagttttcattctgaacattat 50082  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    ||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  50083 attacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa- 50181  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  50182 tttcaggaattatagattatgattattgagagatagtctcacccttac 50229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 8046083 - 8045837
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  8046083 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaaggattaagttttcattctgaacattat 8045984  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||  || ||||||||||||||||||||||| |||||||||||||||||||||||||     
T  8045983 attacaagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa- 8045885  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  8045884 tttcagaaattatagattatgattatcgagagatagtctcacccttac 8045837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 11847908 - 11848164
Alignment:
Q  10 catcatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacat 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11847908 catcatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacat 11848007  T
Q  110 tatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa------tttatcttccaaaactatgcaat 203  Q
    ||||||| || || ||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||      || || || ||||||||||| |     
T  11848008 tatattataaaaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgattttaatttttcaaaactatgccac 11848107  T
Q  204 taggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11848108 taggtcaattttcaggaattatagattatgattattgagagatagtctcacccttac 11848164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 260
Target Start/End: Original strand, 53483573 - 53483755
Alignment:
Q  76 gcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaacc 175  Q
    |||||||||| ||||||||||||||||| ||| ||| |||   | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||      
T  53483573 gcaacaacatggattaagttttcattcttaacgttaaattcagagaaaactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaatt 53483670  T
Q  176 ctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
     ||| |||  | ||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  53483671 ttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttac 53483755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 15408139 - 15408190
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttac 15408190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 259
Target Start/End: Original strand, 27906130 - 27906315
Alignment:
Q  75 agcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaac 174  Q
    |||||||  ||||||||||   |||| | |||||| | ||||||||| | | ||||||||| |||| | ||| | |||| ||||| ||||| |||||||     
T  27906130 agcaacattatagattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccttttctttcaaaatcaacatcacaccctaat 27906229  T
Q  175 cctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccctta 259  Q
     |||||||| |||||| | |||||| | ||||  | ||||||||||||||||| |||||||| ||||| ||||| || ||||||||    
T  27906230 tctcaattttatcttcaagaactattctattatattaattttcagaaattatacattatgatcattgaaagataatcccaccctta 27906315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 8834895 - 8834947
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttac 8834947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 13888641 - 13888693
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttac 13888693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 14486632 - 14486711
Alignment:
Q  181 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||| | ||| || ||||| | | ||||||||||||||||| |||||||| |||||  |||||||||||||||||    
T  14486632 tttatcttcaagaacaattcaattcgattaattttcagaaattatatattatgatcattgaaggatagtctcacccttac 14486711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 259  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 15245215 - 15245267
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| |||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttac 15245267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 15308120 - 15308171
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 259  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| ||||||||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcaccctta 15308171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 111728 - 111933
Alignment:
Q  56 tcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcaga 155  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  111728 tcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcaga 111827  T
Q  156 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaa-ttttcagaaattatagattatgattattgagagatagtctcac 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  111828 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcac 111927  T
Q  255 ccttac 260  Q
    ||||||    
T  111928 ccttac 111933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 14635 - 14400
Alignment:
Q  25 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaa 124  Q
    ||||||||||| ||||||||  ||||| || ||||||| |||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||    
T  14635 attcatcaatttatccaatcaatcatattt-tcaatcagtttatgatcacagcaacagcatagattaagttttcattcggaacatcacattacaacagaa 14537  T
Q  125 ttaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactatgcaattaggtcaattttcagaaatt 223  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14536 ttaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaatt 14437  T
Q  224 atagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||||||||    
T  14436 atagattatgattattgagagatagtctcacccttac 14400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 8727984 - 8727737
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||     
T  8727984 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 8727885  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactatgcaattaggtcaa 211  Q
    |||||||||||||||||||||| | |||||| | ||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8727884 attacaacagaattaacatgatcaataccca-tacccctcagaatcatcgtcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 8727786  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  8727785 ttttcagaaattatagattatgattattgagggataatctcacccttac 8727737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 44477428 - 44477673
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  44477428 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 44477526  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
     ||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44477527 gttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 44477625  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44477626 tttcagaaattatagattatgattattgagagatagtctcacccttac 44477673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 44492586 - 44492831
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  44492586 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 44492684  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
     ||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44492685 gttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 44492783  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44492784 tttcagaaattatagattatgattattgagagatagtctcacccttac 44492831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 23866418 - 23866665
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataa-ttctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacatta 111  Q
    |||||||||||||||||||||||||||||||| ||||||| |||  ||||| |||| ||||| |||||||||| |||||||||||  |||||||||||||    
T  23866418 catcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcagagcaacaaca-agattaagtttatattctgaacatta 23866516  T
Q  112 tattacaac-agaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtca 210  Q
    ||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23866517 tattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtca 23866616  T
Q  211 attttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    | |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  23866617 a-tttcaggaattataaattatgattattgagagatagtctcacccttac 23866665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 27941104 - 27940946
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||| | |||||  ||||||||| ||||||||||||||||||     
T  27941104 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcataacaacagtatagattaaattttcattctgaacattac 27941006  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaa 173  Q
    |||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||||||    
T  27941005 attacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaa 27940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 17054440 - 17054641
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  17054440 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 17054536  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    ||||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17054537 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcac 17054635  T
Q  255 ccttac 260  Q
    ||||||    
T  17054636 ccttac 17054641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 18614217 - 18614323
Alignment:
Q  155 aatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctca 253  Q
    ||||| ||| |||||||||  |||||||| |||||| | ||| || ||||| | ||||||||||||||||||| || |||||||||||||||||||||||    
T  18614217 aatcagcataaaaccctaattctcaattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctca 18614316  T
Q  254 cccttac 260  Q
    |||||||    
T  18614317 cccttac 18614323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 23482117 - 23482057
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttac 23482057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 39364919 - 39364971
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttac 39364971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 29643440 - 29643390
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttac 29643390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 14056619 - 14056568
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttac 14056568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 25111976 - 25112027
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||||||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttac 25112027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 24320725 - 24320675
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttac 24320675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 21931696 - 21931748
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| |||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttac 21931748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 1002 - 755
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||||||| |||||||| |||||||||||| || |||||||||||    
T  1002 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcagtttatgatcacatcaacaaca-agattaagtttttatcctgaacattat 904  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactatgcaattaggtcaa 211  Q
    ||||||| || |||| |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  903 attacaagagtattatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaa 804  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  803 ttttcagaaattatagattatgattattgagagatagtctcacccttac 755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 19661703 - 19661458
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||     
T  19661703 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattac 19661605  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19661604 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 19661506  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  19661505 tttcagaaattatagattatgattatcgagagaaagtctcacccttac 19661458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 6483523 - 6483768
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  ||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  6483523 catcatacaaatcttcatcaattcatcccatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 6483621  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
     ||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6483622 gttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 6483720  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6483721 tttcagaaattatagattatgattattgagagatagtctcacccttac 6483768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 6486990 - 6487235
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  ||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  6486990 catcatacaaatcttcatcaattcatcccatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 6487088  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 212  Q
     ||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6487089 gttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 6487187  T
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6487188 tttcagaaattatagattatgattattgagagatagtctcacccttac 6487235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 68 - 260
Target Start/End: Original strand, 26583687 - 26583877
Alignment:
Q  68 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 167  Q
    ||||||||||||||  |||||||| |  |||||||||||||| |  |||||||| | |||||||||| ||||||| |||||| ||||||||||||||||     
T  26583687 tgatcacagcaacattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattaccc-tttcccctcagaatcatcatcaag 26583785  T
Q  168 ccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26583786 ccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaattatagattatgattattgagagatagtctcacccttac 26583877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 23089305 - 23089059
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| || |||||||||||||||||||  | ||| || ||||||||||||||||||||||||||  |||||||||| |||||||| |||| | |     
T  23089305 catcatacagaacttcatcaattcatccaatcaattatattt-tcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcac 23089207  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaa 211  Q
    ||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||| | |||   || |||||||||||||    
T  23089206 attacaacataattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcaattaggtcaa 23089109  T
Q  212 ttttcagaaattatagattat-gattattgagagatagtctcacccttac 260  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||||||||    
T  23089108 ttttccgaaattaaatattatctattaatgagagatagtctcacccttac 23089059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 23878813 - 23879058
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| || |||||||||||||||||||  |  || || |||||||||||||||||||| |||||  |||||||||| ||||||||||||||| |     
T  23878813 catcatacaaaacttcatcaattcatccaatcaattctattt-tcaatcaatttatgatcacaacaacagtatagattaagatttcattctgaacatcac 23878911  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaa 211  Q
    ||||||||| |||||||||||| |||||||  ||||| |||||||||||| | |||||||||||||||||| ||| | |||   || |||||||||||||    
T  23878912 attacaacataattaacatgatcattaccccattcccctcagaatcatcaac-aaccctaaccctcaatttaatcct-caaggttaagcaattaggtcaa 23879009  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||  ||||||||| || || |||| ||||||||||||||||||||||    
T  23879010 tttttcgaaattatatataattattaatgagagatagtctcacccttac 23879058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 23101713 - 23101467
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| || ||||| |||||||||||||  | ||| || |||||||||||||||||||| |||||  |||||||||| |||||||| |||| | |     
T  23101713 catcatacagaacttcatgaattcatccaatcaattatattt-tcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacgtcac 23101615  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaa 211  Q
    ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||| | |||   ||  ||||||||||||    
T  23101614 attacaacataattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattttatcct-caaggttaaacaattaggtcaa 23101517  T
Q  212 ttttcagaaattatagattat-gattattgagagatagtctcacccttac 260  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||||||||    
T  23101516 ttttccgaaattacatattatctattaatgagagatagtctcacccttac 23101467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 5706274 - 5706028
Alignment:
Q  11 atcatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacat 109  Q
    |||||||| |||| |||||||||||||| ||||   ||| |||| |||||||||| ||| ||   ||||||||||| ||| ||| ||||||||| |||||    
T  5706274 atcatcatccacatattcatcaattcatacaattcatcaaaatt-tcaatcaattaatggattgtagcaacaacatggatcaagctttcattcttaacat 5706176  T
Q  110 tatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggt 208  Q
    || |||   | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||    
T  5706175 taaattcagaga-aactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggt 5706079  T
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  5706078 caa-tttcaggaattatagattatgattaatgagagatagtctcacccttac 5706028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 23265133 - 23265193
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttac 23265193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 23280201 - 23280261
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttac 23280261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 21908353 - 21908410
Alignment:
Q  203 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttac 21908410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 24661576 - 24661628
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttac 24661628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 10577 - 10627
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttac 10627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 25180984 - 25180934
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttac 25180934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 23168483 - 23168303
Alignment:
Q  84 atagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt 183  Q
    ||||||||||   |||| |||||||| | ||||||||| | | ||||||| | |||| | ||| | |||| ||||| ||||| |||||||  ||||||||    
T  23168483 atagattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaaatcagcatcataccctaattctcaattt 23168384  T
Q  184 ----atcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttac 260  Q
        |||||| |||||||| | ||||| | |||||| ||||||||||| |||||||| | ||| ||||| || |||||||||    
T  23168383 ttttatcttc-aaaactattctattagattaatttttcagaaattatacattatgatcaatgaaagataatcccacccttac 23168303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 23579740 - 23579560
Alignment:
Q  84 atagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt 183  Q
    ||||||||||   |||| |||||||| | ||||||||| | | ||||||| | |||| | ||| | |||| ||||| ||||| |||||||  ||||||||    
T  23579740 atagattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaaatcagcatcataccctaattctcaattt 23579641  T
Q  184 ----atcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttac 260  Q
        |||||| |||||||| | ||||| | |||||| ||||||||||| |||||||| | ||| ||||| || |||||||||    
T  23579640 ttttatcttc-aaaactattctattagattaatttttcagaaattatacattatgatcaatgaaagataatcccacccttac 23579560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 20437274 - 20437028
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||     
T  20437274 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 20437176  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 211  Q
    ||||||||| |||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20437175 attacaacataattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 20437077  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20437076 ttttcagaaattatagattatgattattgagagatagtctcacccttac 20437028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 41111884 - 41112085
Alignment:
Q  56 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 154  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||   |  |||| ||||  || ||||    
T  41111884 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacaccgtctttactcatt--ccatcag 41111980  T
Q  155 aatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 254  Q
    ||||||||||||||||||||  |||  |||| || ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41111981 aatcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 41112079  T
Q  255 ccttac 260  Q
    ||||||    
T  41112080 ccttac 41112085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 32651563 - 32651623
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttac 32651623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 18712790 - 18712846
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccc 256  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcaccc 18712846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 19663572 - 19663521
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttac 19663521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 10811839 - 10811787
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttac 10811787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 20805320 - 20805372
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttac 20805372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 11158093 - 11158144
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttac 11158144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 20851187 - 20851137
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttac 20851137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 20857814 - 20857764
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttac 20857764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 21706276 - 21706326
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttac 21706326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 21710818 - 21710868
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttac 21710868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 10446 - 10200
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  10446 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 10348  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 211  Q
    |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  10347 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 10249  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10248 ttttcagaaattatagattatgattattgagagatagtcccacccttac 10200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 1776 - 1530
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  1776 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 1678  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaa 211  Q
    |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  1677 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 1579  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1578 ttttcagaaattatagattatgattattgagagatagtcccacccttac 1530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 2148 - 1902
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||| ||||||||||||||||||||| ||||| ||||| | | |||||||| ||||||||||||||||||||  ||||||||||||||| |||||||||     
T  2148 catcgtacacaaattcatcaattcatacaatcactcatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattatgaacattaa 2049  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaa- 211  Q
    ||||||| ||||||||||| || ||||||||||  || ||| |||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||     
T  2048 attacaagagaattaacataatcattacccatt--ccatcaaaatcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaat 1951  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1950 ttttcagaaattatagattatgattattgagatatagtctcacccttac 1902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 8825 - 8579
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    |||| ||||||||||||||||||||| ||||| || || | | |||||||| ||||||||||||||||||||  ||||||||||||||| |||||||||     
T  8825 catcgtacacaaattcatcaattcatacaatcacttatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattttgaacattaa 8726  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaa- 211  Q
    ||||||| ||||||||||| || ||||||||||  || ||| |||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||     
T  8725 attacaagagaattaacataatcattacccatt--ccatcataatcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaat 8628  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8627 ttttcagaaattatagattatgattattgagatatagtctcacccttac 8579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 11146 - 11392
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| || |||||||||||||||||||  | ||| || ||||||||||| ||||||||||||||  || ||||||| ||||||| ||||||| |     
T  11146 catcatacaaaacttcatcaattcatccaatcaattatattt-tcaatcaatttgtgatcacagcaacagtatggattaagatttcattttgaacatcac 11244  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaattaggtcaa 211  Q
    |||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||    
T  11245 attacaacagaattaacatgatcattactcatt-ccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaa 11343  T
Q  212 ttttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11344 ttttcagaaattatagattatgattattgagagatagtctcacccttac 11392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 109 - 341
Alignment:
Q  25 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaa 124  Q
    ||||||||||| |||||| |  |||||||| |||| ||||||||||||||| ||| |||||||||||||| |||| ||||||||  ||| ||||| | ||    
T  109 attcatcaatttatccaaccaatcataatt-tcaaccaatttatgatcacatcaataacatagattaagtcttcaatctgaacaccataatacaagaaaa 207  T
Q  125 ttaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaatta 224  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  208 ttaacatgatcattacccattcccct-cagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaatta 305  T
Q  225 tagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||| ||||||||||||||||||||||||||    
T  306 tagattatggttattgagagatagtctcacccttac 341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 17973 - 18220
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| | ||||||||||| ||||||||  ||  |||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |     
T  17973 catcatacaaatattcatcaatttatccaatcaatccaaatt-tcaatcaattcatgatcacagcaacaacataggttaagttttcattctggacatcac 18071  T
Q  113 attacaa-cagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtca 210  Q
    ||||||| ||||||||||||||  |||||| ||||||| | ||||||||||| ||||| ||||||||||||||| |||| ||| ||| ||||||||||||    
T  18072 attacaaacagaattaacatgaccattacc-atttcccgttagaatcatcattaaaccttaaccctcaatttattttcctaaagctaagcaattaggtca 18170  T
Q  211 attttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18171 attttcaaaaattatagattatgattattgagagatagtctcacccttac 18220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 3544 - 3297
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| || |||||||||||||||||||  | ||| || ||||||||||| ||||||||||||||  |||||||||| ||||||||||||||| |     
T  3544 catcatacaaaacttcatcaattcatccaatcaattatattt-tcaatcaatttgtgatcacagcaacagtatagattaagatttcattctgaacatcac 3446  T
Q  113 attacaacagaattaacatgatt-attacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtca 210  Q
    ||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||  ||||   || ||||||||||||    
T  3445 attacaacaaaattaacatgattcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattttatc-cccaaggttaagcaattaggtca 3348  T
Q  211 attttcagaaattatagattat-gattattgagagatagtctcacccttac 260  Q
    |||||| ||||||| | |||||  |||| ||||||||||||||||||||||    
T  3347 attttccgaaattacatattatctattaatgagagatagtctcacccttac 3297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 68 - 260
Target Start/End: Original strand, 30715 - 30908
Alignment:
Q  68 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 167  Q
    |||||||| |||||  |||||||| |  ||||||||| |||| |  |||||||| | ||||||||||  |||| |  ||||| ||| |||||||||||||    
T  30715 tgatcacatcaacattatagattaggaattcattctgcacatcactttacaacatatttaacatgatcgttacaccattcccctcaaaatcatcatcaaa 30814  T
Q  168 ccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30815 ccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 30908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 3872 - 3626
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 112  Q
    ||||||||| || |||||||||||||||||||  | ||| || |||||||||||||||||||| |||||  |||||||||| |||||||| |||||| |     
T  3872 catcatacaaaacttcatcaattcatccaatcaattatattt-tcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacatcac 3774  T
Q  113 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaa 211  Q
    ||||||||| |||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||| |||||| | |||   || |||||||||||||    
T  3773 attacaacataattaacatgatcattaccca-tccccctcagaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcaattaggtcaa 3676  T
Q  212 ttttcagaaattatagattat-gattattgagagatagtctcacccttac 260  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||||||||    
T  3675 ttttccgaaattacatattatctattaatgagagatagtctcacccttac 3626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 260
Target Start/End: Complemental strand, 1920 - 1737
Alignment:
Q  74 cagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaa 173  Q
    |||||||| ||| ||||||| ||||||||| ||||||| ||| | | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||    
T  1920 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatccttactcatt--ccatcagaatcatcatcaaaccctaa 1823  T
Q  174 ccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |  |||  |||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  1822 ctttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttac 1737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 260
Target Start/End: Complemental strand, 5943 - 5760
Alignment:
Q  74 cagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaa 173  Q
    |||||||| ||| ||||||| ||||||||| ||||||| ||| | | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||    
T  5943 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatccttactcatt--ccatcagaatcatcatcaaaccctaa 5846  T
Q  174 ccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |  |||  |||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  5845 ctttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttac 5760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 3466 - 3558
Alignment:
Q  13 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctga 105  Q
    |||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3466 catcatacacaaattcatcaattcatccaatcacccataaatttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctga 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 904 - 982
Alignment:
Q  182 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttac 982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 8049 - 8127
Alignment:
Q  182 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttac 8127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 806 - 901
Alignment:
Q  25 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaaca 121  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  806 attcatcaatttatccaatccctcataattc-caatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaaca 901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 7951 - 8046
Alignment:
Q  25 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaaca 121  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  7951 attcatcaatttatccaatccctcataattc-caatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaaca 8046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 45386 - 45279
Alignment:
Q  153 agaatcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtct 251  Q
    |||||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtct 45288  T
Q  252 cacccttac 260  Q
    |||||||||    
T  45287 cacccttac 45279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 16811 - 16871
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttac 16871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 116887 - 116947
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttac 116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 72 - 12
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttac 12  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 13623 - 13683
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttac 13683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 101992 - 101932
Alignment:
Q  200 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttac 101932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 17643 - 17694
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttac 17694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 40587 - 40536
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttac 40536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 135473 - 135524
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttac 135524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 22646 - 22597
Alignment:
Q  211 attttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttac 22597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 34331 - 34280
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttac 34280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 260
Target Start/End: Original strand, 1321 - 1437
Alignment:
Q  145 ttcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgaga 243  Q
    |||| |||| ||||| |||||||||||||  |||| ||| ||| || | ||| ||  |||||| |||||||||| |||||||| || ||||| ||||| |    
T  1321 ttcctttcaaaatcagcatcaaaccctaattctcagttttatcatcaagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaa 1420  T
Q  244 gatagtctcacccttac 260  Q
    |||||||||||||||||    
T  1421 gatagtctcacccttac 1437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 12296 - 12348
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttac 12348  T

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Target: scaffold0609 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 5941 - 5862
Alignment:
Q  181 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || ||||| ||||| || |||||||||    
T  5941 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttac 5862  T

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Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 15052 - 15001
Alignment:
Q  209 caattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttac 15001  T

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Target: scaffold0261 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 260
Target Start/End: Complemental strand, 23760 - 23574
Alignment:
Q  75 agcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaac 174  Q
    |||||||  ||||||||||   |||| |||||||| | ||||||||| | | ||||||||| ||||   ||| | |||| ||||| ||||| |||||||     
T  23760 agcaacattatagattaagaaatcatactgaacatcaaattacaacacattaaacatgattcttacatcttttctttcaaaatcagcatcacaccctaat 23661  T
Q  175 cctcaattta-tcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
     ||||||||  ||||| | |||||| |  |||| | ||||||||||||||||| |||||||| ||| | ||||| || |||||||||    
T  23660 tctcaattttgtcttcaagaactattcttttagattaattttcagaaattatacattatgatcattcaaagataatcccacccttac 23574  T

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Target: scaffold0096 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 39563 - 39511
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||| ||||||||| |||||||| |||||||| ||| |||||||||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttac 39511  T

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Target: scaffold0815 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 1453 - 1500
Alignment:
Q  213 tttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||||||||||| |||| ||| |||||||| |||||||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttac 1500  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 493099 - 493033
Alignment:
Q  193 aactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    |||||| | ||||| | ||||||||||||||||| |||| ||||||||| ||||| ||||||||||||    
T  493099 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatctcacccttac 493033  T

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Target: scaffold1318 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 1967 - 1917
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttac 1917  T

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Target: scaffold0348 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 9336 - 9386
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttac 9386  T

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Target: scaffold0127 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 10239 - 10289
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||| | |||||||||||||  ||||| ||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttac 10289  T

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Target: scaffold0023 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 135438 - 135488
Alignment:
Q  210 aattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||||| |||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttac 135488  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 2684 - 2632
Alignment:
Q  208 tcaattttcagaaattatagattatgattattgagagatagtctcacccttac 260  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| |||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttac 2632  T

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