View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2653_low_25 (Length: 243)
Name: NF2653_low_25
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_low_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4678909 - 4678667
Alignment:
| Q |
1 |
gaagcaagtgcgtcggagaatttcattaacatctgagtttcgtctttgttcagctccatcctttgtaccagaagtcagatgcgaacaaacaaagcacata |
100 |
Q |
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| T |
4678909 |
gaagcaagtgcgtcggagaatttcattaacatctgagtttcgtctttgttcagctccatccttcgtaccagaggtcagatgcgaacaaacaaagcacata |
4678810 |
T |
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| Q |
101 |
cgcgactgaaagagtgacatgctgattgaaacagaaccctgcatcatatgtcaaaatgagcaaattctttcactaagtgcacaagtttggatcatcatta |
200 |
Q |
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| T |
4678809 |
cgcgactgaaagagtgacatgctgattgaaacagaaccctgcatcatatgtcaaaatgagcaaattctttcactaagtgcacaagtttggatcatcatta |
4678710 |
T |
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| Q |
201 |
gccttgctgacaaaggtagatcgttgaattcatacaatggatt |
243 |
Q |
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| T |
4678709 |
gccttgctgacaaaggtagatcgttgaattcatacaatggatt |
4678667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 40769349 - 40769488
Alignment:
| Q |
7 |
agtgcgtcggagaatttcattaacatctgagtttcgtctttgttcagctccatcctttgtaccagaagtcagatgcgaacaaacaaagcacatacgcgac |
106 |
Q |
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| T |
40769349 |
agtgcgttgtagaatttcatgtacatctgagtttcgtctttgttccgctccatctttctgacctgaagccagatgggaacaaacaaagcacatacgtgac |
40769448 |
T |
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| Q |
107 |
tgaaagagtgacatgctgattgaaacagaaccctgcatca |
146 |
Q |
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| T |
40769449 |
tgaaaaacagacatgctaactgaaacagacccctgcatca |
40769488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 40776227 - 40776369
Alignment:
| Q |
2 |
aagcaagtgcgtcggagaatttcattaacatctgagtttcgtctttgttcagctccatcctttgtaccagaagtcagatgcgaacaaacaaagcacatac |
101 |
Q |
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|||| ||||||| |||||||||| | |||||||||||| | ||||||||| |||||||| ||| ||| |||| |||||| ||||||||||||||||| | |
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| T |
40776227 |
aagcgagtgcgttggagaatttcgtgaacatctgagttccttctttgttccgctccatctttttgaccggaagccagatgagaacaaacaaagcacatgc |
40776326 |
T |
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| Q |
102 |
gcgactgaaagagtgacatgctgattgaaacagaaccctgcat |
144 |
Q |
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| T |
40776327 |
gtgactgaaaaacggacatgctaactgaaacagatccctgcat |
40776369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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