View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2653_low_27 (Length: 220)
Name: NF2653_low_27
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 7904325 - 7904116
Alignment:
| Q |
1 |
caatggagaaattctttacttcataaattcatttattatgtcctctcnnnnnnnnnnnnnnnncattaattatgtgaatagggtttcctaatttccaact |
100 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7904325 |
caatggagaaattttttacttcataagttcatttattatgtcctctcaaaacaaaataaaaaacattaattatgtgaatagggtttcctaatttccaact |
7904226 |
T |
|
| Q |
101 |
agtcaaaaaaggtgtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctctgtagtactagtattctaaa |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7904225 |
agtcaaaaaaggggtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctctgtagtactagtattctaaa |
7904126 |
T |
|
| Q |
201 |
acatgatgat |
210 |
Q |
| |
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|||||||||| |
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| T |
7904125 |
acatgatgat |
7904116 |
T |
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