View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2653_low_3 (Length: 739)
Name: NF2653_low_3
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 676; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 676; E-Value: 0
Query Start/End: Original strand, 15 - 726
Target Start/End: Original strand, 49928927 - 49929638
Alignment:
| Q |
15 |
acttagctcctcacgtaaacacttgtgagactgttttaatttagatagacaaaaagcactcttatgagaagtgtttatgctataagttgtttatatcaac |
114 |
Q |
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| T |
49928927 |
acttagctcctcacgcaaacacttgtgagactgttttaatttagatagacaaaaagcactcttatgagaagtgtttatgctataagttgtttatatcaaa |
49929026 |
T |
|
| Q |
115 |
caaggctaaaatatagtcaaatatctttcatataatataagctacatgctgtttcataagctattatggatagcttatctaaataaactgaaaaaatctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49929027 |
caaggctaaaatatagtcaaatatctttcatataatataagctacatgctgtttcataagctattatggatagcttatctaaataaactgaaaaaatctt |
49929126 |
T |
|
| Q |
215 |
aagaacatatcctaagatgttttcacaagtgcttatgtcacaagataaacataagtaaattaatccaaacataccctaaattgtgaaatgtgttatgtga |
314 |
Q |
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| T |
49929127 |
aagaacatatcctaagatgttttcacaagtgcttatgtctctagataaacataagtaaattaatccaaacataccctaaattgtgaaatgtgttatgtga |
49929226 |
T |
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| Q |
315 |
ataatgatgtctatacattaattttggttatcagtggtatgaaaagaattcaaggggattggagattttctgcaaaagctggatgccagaacatggcgtt |
414 |
Q |
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| T |
49929227 |
ataatgatgtctatacattaattttatttatcagtggtatgaaaggaattcaaggggattggagattttctgcaaaagctggatgccagaacatggcgtt |
49929326 |
T |
|
| Q |
415 |
ccaattaaaggggctttgtttttctgtcatggatatggcagtacttgcactttcttctttgaaggtttgtctttgcaacagagctagagagttatcaaat |
514 |
Q |
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| T |
49929327 |
ccaattaaaggggctttgtttttctgtcatggatatggcagtacttgcactttcttctttgaaggtttgtctttgtaacagagctagagagttatcaaat |
49929426 |
T |
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| Q |
515 |
ttgaggatggaggtttaatttgaatgattgttcaggtattgcaaggagaattgctgcttctgggtttggtgtttatgcaatggattttccgggttttggt |
614 |
Q |
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| T |
49929427 |
ttgaggatggaggattaatttgaatgattgttcaggtattgcaaggagaattgctgcttctgggtttggtgtttatgcaatggattttccgggttttggt |
49929526 |
T |
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| Q |
615 |
ttatctgaaggattacatggttacataccaagttttgatgatttagtcgatgatgttatagaatactatacaaaaattaaaggtatggacttttatttta |
714 |
Q |
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| T |
49929527 |
ttatctgaaggattacatggttacataccaagttttgatgatttagtcgatgatgttatagaatactatacaaaaattaaaggtatggacttttatttta |
49929626 |
T |
|
| Q |
715 |
gcacttgtgatg |
726 |
Q |
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|||||||||||| |
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| T |
49929627 |
gcacttgtgatg |
49929638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 545 - 701
Target Start/End: Original strand, 23287968 - 23288124
Alignment:
| Q |
545 |
ttcaggtattgcaaggagaattgctgcttctgggtttggtgtttatgcaatggattttccgggttttggtttatctgaaggattacatggttacatacca |
644 |
Q |
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||||||| |||| |||||||||||||| ||||||| || ||||| ||| ||||| | ||| |||||||| | || |||||||| ||||||||||||||| |
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| T |
23287968 |
ttcaggtgttgcgaggagaattgctgcatctgggtatgctgtttttgcgatggactatccaggttttggactttcagaaggattgcatggttacatacca |
23288067 |
T |
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| Q |
645 |
agttttgatgatttagtcgatgatgttatagaatactatacaaaaattaaaggtatg |
701 |
Q |
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| || |||||| | ||||| ||||||||||| | |||||| |||| ||||||||| |
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| T |
23288068 |
aacttcgatgatcttgtcgacgatgttatagagcattatacacaaataaaaggtatg |
23288124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 347 - 484
Target Start/End: Original strand, 23287693 - 23287830
Alignment:
| Q |
347 |
agtggtatgaaaagaattcaaggggattggagattttctgcaaaagctggatgccagaacatggcgttccaattaaaggggctttgtttttctgtcatgg |
446 |
Q |
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|||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||| || ||||||| || | || ||| ||| |||||||| |
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| T |
23287693 |
agtggtatgaaaggaattcgaggggattggaaattttctgcaagagctggatgccagagtcaggaattccaatcaaggcatctgtgtgtttttgtcatgg |
23287792 |
T |
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| Q |
447 |
atatggcagtacttgcactttcttctttgaaggtttgt |
484 |
Q |
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| T |
23287793 |
atatggtgatacttgcacattcttctttgaaggtttgt |
23287830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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