View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2653_low_4 (Length: 658)
Name: NF2653_low_4
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 332 - 642
Target Start/End: Complemental strand, 51262373 - 51262063
Alignment:
| Q |
332 |
gacttatgaaattcattaaattctgattataatttgtgggatcaggatgcggcgatggggctggtgttgagtgcagcaacaggtagaggatggacaacag |
431 |
Q |
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| T |
51262373 |
gacttatgaaattcattaaattctgattataatttgtgggatcaggatgcggcgatggggttggtgttgagtgcagcaacaggtagaggatggacaacag |
51262274 |
T |
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| Q |
432 |
gttctggaatggaaggtccccctgttcctgctgttggcaaggatggccaatctgggactgagaatatttccactttcccatggtcactcttcactaaatc |
531 |
Q |
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| T |
51262273 |
gttctggaatggaaggtccccctgttcctgctgttggcaaggatggccaatctgggactgagaatatttccactttcccatggtcactcttcactaaatc |
51262174 |
T |
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| Q |
532 |
tcccaggcgaaggatgctcatcgcttttacttgtaccatctgtggccagcgaactactcgcgccattaatcctcatgcttacactgatggcactgttttt |
631 |
Q |
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| T |
51262173 |
tcccaggcgaaggatgctcatcgcttttacttgtaccatctgtggccagcgaactactcgcgctattaatcctcatgcttacactgatggcactgttttt |
51262074 |
T |
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| Q |
632 |
gttcaggtaac |
642 |
Q |
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| T |
51262073 |
gttcaggtaac |
51262063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 139 - 310
Target Start/End: Complemental strand, 51262561 - 51262402
Alignment:
| Q |
139 |
attctttcaggtgacgatggtaacaacgattcagaatcgcaatctaaatcatcgtcatcatcatcaaaccaaatcaacttcaacctttctccagttccca |
238 |
Q |
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| T |
51262561 |
attctttcaggtgacgatggtaacaacgattcagaatcgcaatctaaatcatc------------aaaccaaatcaacttcaacctttctccagttccca |
51262474 |
T |
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| Q |
239 |
ctaatcgctgtttctccatttcgcctctttccaatgtatgtaatgtttctctctctctaaccctaatttccc |
310 |
Q |
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| T |
51262473 |
ctaatcgctgtttctccatttcgcctctttccaatgtatgtaatgtttctctctctctaaccctaatttccc |
51262402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 51262701 - 51262615
Alignment:
| Q |
9 |
catcatcatcatctctttcttccaagaaaaccttccactttcgtctaccttcctccaagcgtaagcgtctgtattctcttctcgatcaatctt |
101 |
Q |
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| T |
51262701 |
catcatcatcatctctttcttccaagaaaaccttccactttcgtctaccttcctccaa------gcgtctgtattctcttctcgatcaatctt |
51262615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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