View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2653_low_5 (Length: 606)

Name: NF2653_low_5
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2653_low_5
NF2653_low_5
[»] chr7 (34 HSPs)
chr7 (1-354)||(23063565-23063918)
chr7 (1-388)||(23080208-23080614)
chr7 (1-353)||(23091115-23091467)
chr7 (140-352)||(23056497-23056709)
chr7 (136-348)||(23034896-23035108)
chr7 (136-348)||(23026088-23026300)
chr7 (467-535)||(23080655-23080723)
chr7 (465-552)||(31850776-31850864)
chr7 (465-550)||(1309752-1309837)
chr7 (465-550)||(16979942-16980027)
chr7 (465-537)||(8896626-8896698)
chr7 (471-550)||(23142686-23142766)
chr7 (465-553)||(34993156-34993244)
chr7 (465-552)||(25530573-25530660)
chr7 (471-550)||(16685731-16685812)
chr7 (471-550)||(17659967-17660048)
chr7 (471-537)||(8746149-8746215)
chr7 (465-550)||(37928300-37928385)
chr7 (465-553)||(43118803-43118891)
chr7 (1-60)||(23056329-23056388)
chr7 (471-550)||(31487744-31487823)
chr7 (473-548)||(41064341-41064416)
chr7 (465-552)||(43626345-43626432)
chr7 (470-529)||(18037883-18037942)
chr7 (473-552)||(30027962-30028041)
chr7 (465-532)||(41434719-41434786)
chr7 (465-550)||(11740389-11740474)
chr7 (465-550)||(19676995-19677080)
chr7 (470-517)||(10068130-10068177)
chr7 (470-548)||(42888305-42888383)
chr7 (474-553)||(1521241-1521317)
chr7 (465-550)||(33194722-33194807)
chr7 (465-553)||(12810175-12810263)
chr7 (471-550)||(18221020-18221100)
[»] scaffold0079 (1 HSPs)
scaffold0079 (471-550)||(51646-51725)
[»] chr8 (28 HSPs)
chr8 (465-548)||(18200709-18200792)
chr8 (465-550)||(11150923-11151007)
chr8 (471-550)||(10029162-10029241)
chr8 (465-550)||(43917587-43917672)
chr8 (471-553)||(41726893-41726975)
chr8 (470-550)||(35901449-35901529)
chr8 (465-552)||(18647489-18647575)
chr8 (471-550)||(20542387-20542466)
chr8 (471-553)||(1342319-1342400)
chr8 (471-553)||(27506980-27507062)
chr8 (465-553)||(44648966-44649054)
chr8 (413-546)||(17720157-17720287)
chr8 (465-550)||(3137400-3137485)
chr8 (465-550)||(13873697-13873782)
chr8 (465-553)||(34678235-34678322)
chr8 (471-553)||(600369-600451)
chr8 (467-505)||(30076211-30076249)
chr8 (471-553)||(40489847-40489929)
chr8 (465-550)||(32881113-32881198)
chr8 (480-547)||(23425310-23425377)
chr8 (487-537)||(29030465-29030515)
chr8 (465-550)||(39065562-39065646)
chr8 (465-537)||(3347539-3347610)
chr8 (471-550)||(31331000-31331080)
chr8 (465-524)||(18045309-18045368)
chr8 (498-550)||(23725686-23725738)
chr8 (483-539)||(30924212-30924267)
chr8 (465-525)||(44947372-44947432)
[»] chr4 (27 HSPs)
chr4 (471-550)||(16341136-16341215)
chr4 (465-550)||(20775072-20775157)
chr4 (470-553)||(12094955-12095038)
chr4 (471-550)||(27284072-27284151)
chr4 (470-553)||(55126811-55126895)
chr4 (472-547)||(2824851-2824926)
chr4 (470-537)||(19480550-19480617)
chr4 (470-553)||(31991491-31991574)
chr4 (471-550)||(7437863-7437942)
chr4 (471-550)||(27133549-27133628)
chr4 (484-550)||(52837314-52837380)
chr4 (471-520)||(31861462-31861511)
chr4 (467-515)||(35395351-35395399)
chr4 (465-553)||(41142322-41142410)
chr4 (470-521)||(42595217-42595268)
chr4 (465-511)||(44190258-44190304)
chr4 (465-550)||(12076456-12076541)
chr4 (472-552)||(13967842-13967923)
chr4 (465-553)||(22611925-22612014)
chr4 (465-514)||(39810731-39810780)
chr4 (471-531)||(31089819-31089878)
chr4 (465-532)||(2565439-2565506)
chr4 (465-547)||(43556576-43556658)
chr4 (472-517)||(44639901-44639946)
chr4 (465-517)||(43970074-43970126)
chr4 (467-550)||(44740877-44740961)
chr4 (487-547)||(46399841-46399901)
[»] chr1 (26 HSPs)
chr1 (471-553)||(26829489-26829571)
chr1 (465-548)||(33148159-33148242)
chr1 (465-554)||(8001775-8001864)
chr1 (465-550)||(13969127-13969212)
chr1 (465-537)||(11449073-11449145)
chr1 (470-552)||(27688476-27688559)
chr1 (465-548)||(46295899-46295982)
chr1 (483-553)||(34347556-34347626)
chr1 (483-553)||(52860837-52860908)
chr1 (496-550)||(3529111-3529165)
chr1 (471-553)||(5069494-5069575)
chr1 (465-547)||(50015803-50015885)
chr1 (465-553)||(37494173-37494256)
chr1 (465-552)||(17169298-17169385)
chr1 (465-530)||(10226490-10226555)
chr1 (465-550)||(32187054-32187138)
chr1 (470-550)||(38597480-38597560)
chr1 (465-537)||(39238844-39238916)
chr1 (465-536)||(48579907-48579981)
chr1 (471-550)||(5069703-5069782)
chr1 (471-550)||(30941503-30941582)
chr1 (471-550)||(37597166-37597245)
chr1 (470-547)||(30109229-30109307)
chr1 (499-553)||(35540434-35540488)
chr1 (484-517)||(45748961-45748994)
chr1 (465-509)||(602758-602802)
[»] chr5 (17 HSPs)
chr5 (471-550)||(1056809-1056888)
chr5 (465-550)||(30293851-30293936)
chr5 (465-548)||(27544591-27544674)
chr5 (465-547)||(30840626-30840707)
chr5 (465-537)||(11815924-11815996)
chr5 (470-550)||(36482052-36482131)
chr5 (465-550)||(1920774-1920859)
chr5 (471-552)||(6646286-6646367)
chr5 (465-537)||(7718502-7718575)
chr5 (471-550)||(22293984-22294063)
chr5 (471-550)||(27366005-27366084)
chr5 (471-517)||(2089150-2089196)
chr5 (470-547)||(41645037-41645112)
chr5 (470-538)||(8151828-8151899)
chr5 (471-550)||(42491639-42491719)
chr5 (471-550)||(8435057-8435136)
chr5 (471-525)||(14044714-14044768)
[»] chr2 (31 HSPs)
chr2 (470-548)||(40346710-40346788)
chr2 (467-548)||(18717852-18717933)
chr2 (470-550)||(13738428-13738508)
chr2 (465-553)||(41436322-41436410)
chr2 (465-550)||(4978780-4978865)
chr2 (465-550)||(4996688-4996773)
chr2 (465-550)||(14953024-14953109)
chr2 (465-550)||(31904251-31904335)
chr2 (470-550)||(6315887-6315967)
chr2 (465-550)||(23453344-23453430)
chr2 (471-550)||(28331288-28331367)
chr2 (475-550)||(43080344-43080418)
chr2 (471-552)||(32909439-32909523)
chr2 (471-553)||(40574177-40574259)
chr2 (471-550)||(3689653-3689730)
chr2 (465-525)||(38024209-38024268)
chr2 (471-553)||(4557568-4557651)
chr2 (471-550)||(8580512-8580591)
chr2 (465-552)||(13717176-13717262)
chr2 (465-550)||(42251607-42251692)
chr2 (465-553)||(1004803-1004890)
chr2 (465-517)||(7141147-7141199)
chr2 (471-550)||(9021473-9021552)
chr2 (471-550)||(27896463-27896542)
chr2 (465-552)||(29526329-29526416)
chr2 (470-525)||(43681304-43681359)
chr2 (465-531)||(3201166-3201232)
chr2 (476-550)||(5525324-5525398)
chr2 (465-547)||(18857437-18857519)
chr2 (465-550)||(33609202-33609287)
chr2 (465-553)||(6462619-6462707)
[»] chr3 (27 HSPs)
chr3 (465-553)||(44698215-44698303)
chr3 (465-553)||(54801358-54801446)
chr3 (471-554)||(50958856-50958939)
chr3 (465-547)||(29032415-29032497)
chr3 (471-549)||(31494039-31494117)
chr3 (471-553)||(49261777-49261859)
chr3 (465-550)||(28709594-28709679)
chr3 (470-553)||(4128726-4128809)
chr3 (471-553)||(48338810-48338892)
chr3 (470-550)||(40460227-40460307)
chr3 (465-550)||(4020098-4020183)
chr3 (465-550)||(11676764-11676849)
chr3 (474-550)||(42437753-42437827)
chr3 (475-550)||(635743-635818)
chr3 (465-550)||(3215038-3215126)
chr3 (465-517)||(25958087-25958139)
chr3 (471-550)||(26613099-26613179)
chr3 (471-547)||(34145939-34146014)
chr3 (465-553)||(38359044-38359132)
chr3 (471-550)||(55446733-55446811)
chr3 (465-550)||(6785822-6785908)
chr3 (471-553)||(31475114-31475194)
chr3 (465-553)||(47334857-47334945)
chr3 (465-550)||(1711952-1712037)
chr3 (467-508)||(8326179-8326220)
chr3 (470-550)||(25319463-25319543)
chr3 (487-547)||(53818829-53818889)
[»] chr6 (13 HSPs)
chr6 (476-552)||(8636783-8636859)
chr6 (465-550)||(5611157-5611242)
chr6 (470-552)||(227331-227415)
chr6 (465-537)||(33121339-33121411)
chr6 (467-550)||(17345872-17345955)
chr6 (472-550)||(32134046-32134124)
chr6 (471-550)||(2470351-2470430)
chr6 (484-550)||(27082311-27082377)
chr6 (465-550)||(10008193-10008278)
chr6 (465-550)||(19418595-19418680)
chr6 (465-532)||(18493261-18493328)
chr6 (470-548)||(19659647-19659725)
chr6 (465-517)||(1397060-1397113)
[»] scaffold0204 (1 HSPs)
scaffold0204 (465-550)||(15394-15479)
[»] scaffold0329 (1 HSPs)
scaffold0329 (465-515)||(7394-7444)
[»] scaffold0039 (1 HSPs)
scaffold0039 (470-538)||(30020-30088)
[»] scaffold0002 (1 HSPs)
scaffold0002 (465-552)||(120667-120754)
[»] scaffold0299 (1 HSPs)
scaffold0299 (465-550)||(18044-18130)
[»] scaffold0036 (1 HSPs)
scaffold0036 (470-506)||(36576-36612)
[»] scaffold0283 (1 HSPs)
scaffold0283 (465-525)||(3350-3410)


Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-169; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 23063565 - 23063918
Alignment:
Q  1 tggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcagttctctaatgcaaatatattatctctaatgagaacatgtaat 100  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  23063565 tggtcacttcatggaatgacagctctagtaactggtggaacacgaggcatagggtcagttctctaatgcaaatatcttatcactaatgagaacatgtaat 23063664  T
Q  101 gtaatttatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatca 200  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23063665 gtaatgaatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggggcaagtgtgcatatatgtgcacgtaatca 23063764  T
Q  201 agatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaaaagttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23063765 agatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaaaagttg 23063864  T
Q  301 atggaaactgttgcatctgtcttcgatggaaaactcaatattctagtaagattc 354  Q
    |||||||| ||||| ||  |||| ||||||||||||||||||||||||||||||    
T  23063865 atggaaaccgttgcttcgatctttgatggaaaactcaatattctagtaagattc 23063918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 23080208 - 23080614
Alignment:
Q  1 tggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcagttctctaatgcaaatatattatctctaatgagaacatgtaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23080208 tggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcagttctctaatgcaaatatattatctctaatgagaacatgtaat 23080307  T
Q  101 gtaatttatcatgttaatttt-------------------gtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgc 181  Q
    ||||||||||||  |||||||                   |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23080308 gtaatttatcatcataattttattttgttttgtttcttttgtgaataatcaattaggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgc 23080407  T
Q  182 atatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttca 281  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23080408 atatatgtgcacgcaatcaagaagatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttca 23080507  T
Q  282 tgaccaacgtcaaaagttgatggaaactgttgcatctgtcttcgatggaaaactcaatattctagtaagattctcatccgtctctaactattatgtcctt 381  Q
    ||||||||||||||||||||||||||||||||| |  ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23080508 tgaccaacgtcaaaagttgatggaaactgttgctttggtctttgatggaaaactcaatattcttgtaagattctcatccgtctctaactattatgtcctt 23080607  T
Q  382 ttgggaa 388  Q
    |||||||    
T  23080608 ttgggaa 23080614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 23091115 - 23091467
Alignment:
Q  1 tggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcagttctctaatgcaaatatattatctctaatgagaacatgtaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  23091115 tggtcactccaaggaatgacagctctagtgactggtggaacacgaggcttagggttagttctctaatgcaaatatcttatctcaaatgagaacatgtaat 23091214  T
Q  101 gtaatttatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatca 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||    
T  23091215 ataatttatcatgttaattttgtgattaatcaatcaggtatgcaattgtggaagagttagcagaatttggggcaagtgtgcatatatgtgcaagaaatca 23091314  T
Q  201 agatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaaaagttg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| |||    
T  23091315 agatgatattaacaaatgtttggaagagtggaaaggcaaaggattttgtgtgacaggttcaacttgtgatttattatttcgtgaacaacgtgaaaaattg 23091414  T
Q  301 atggaaactgttgcatctgtcttcgatggaaaactcaatattctagtaagatt 353  Q
    |||||||||||||| ||   |||  | ||||||||||||||||||||||||||    
T  23091415 atggaaactgttgcttcaacctttcaaggaaaactcaatattctagtaagatt 23091467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 140 - 352
Target Start/End: Original strand, 23056497 - 23056709
Alignment:
Q  140 atgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaaggcaa 239  Q
    |||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23056497 atgcaattgtggaagaattagtagaatttggggcaagggtgcatatatgtgcacgaaatcaagatgatattaacaaatgtttggaagagtggaaaggcaa 23056596  T
Q  240 aggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaaaagttgatggaaactgttgcatctgtcttcgatggaaaactcaat 339  Q
    |||||||||||| ||||| ||| |||||||||||||||    |||||||||||||||  | ||||||| |||||| ||  ||||  | ||||||||||||    
T  23056597 aggattttgtgtaacagggtcagcttgtgatttattatcctgtgaccaacgtcaaaatctaatggaaaatgttgcttcaatctttcaaggaaaactcaat 23056696  T
Q  340 attctagtaagat 352  Q
    |||||||||||||    
T  23056697 attctagtaagat 23056709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 136 - 348
Target Start/End: Original strand, 23034896 - 23035108
Alignment:
Q  136 aggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaag 235  Q
    ||||| ||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||     
T  23034896 aggtacgcaattgtggaagagttagcagaatttggagcagctgtgcatgtatgtgcacgtaatgaagaagatattaataaatgtttggaagagtggaaaa 23034995  T
Q  236 gcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaaaag-ttgatggaaactgttgcatctgtcttcgatggaaaac 334  Q
     |||||| |||  ||| ||||| |||   |||||| ||||||||||||| ||||| |||||| || |||||||||||| | ||| ||||  ||||||| |    
T  23034996 acaaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacg-caaaagattaatggaaactgtttcttctatctttcatggaaagc 23035094  T
Q  335 tcaatattctagta 348  Q
    ||||||||||||||    
T  23035095 tcaatattctagta 23035108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 136 - 348
Target Start/End: Original strand, 23026088 - 23026300
Alignment:
Q  136 aggtatgcaattgtggaagagttagcagaatttggtgcaagtgtgcatatatgtgcacgtaatcaagatgatattaacaaatgtttggaagagtggaaag 235  Q
    ||||| |||||||| ||||||||||| |||||||| |||  |||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||     
T  23026088 aggtacgcaattgttgaagagttagctgaatttggagcatctgtgcatatatgtgcacgtaatgaagaagatattaataaatgtttggaagagtggaaaa 23026187  T
Q  236 gcaaaggattttgtgtgacaggttcaacttgtgatttattatttcatgaccaacgtcaaaagttgatggaaactgttgcatctgtcttcgatggaaaact 335  Q
     |||||| |||  ||| ||||| |||   |||||| || |||||||||| |||||  | ||  | |||||||||||| | ||| ||||  | ||||| ||    
T  23026188 acaaagggtttaatgtaacaggatcagtatgtgatatactatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcaaggaaagct 23026287  T
Q  336 caatattctagta 348  Q
    |||||||||||||    
T  23026288 caatattctagta 23026300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 467 - 535
Target Start/End: Original strand, 23080655 - 23080723
Alignment:
Q  467 ttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttatt 535  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  23080655 ttaaaaatataagatgttacttttgatcaagtaatgattacataattttttcataaaaatttatttatt 23080723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 465 - 552
Target Start/End: Original strand, 31850776 - 31850864
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcat-aaaaatttacttattttggatgcttaaccatt 552  Q
    ||||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||    
T  31850776 tcttagaaatataagatgttacttttaataaaataatgattacataattttttcataaaaaacttacttgttttagatgcttaaccatt 31850864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 1309752 - 1309837
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||| | ||||||||| |||||||||  |||||| |||||||||||||||||||| |||||||||||| |||||||    
T  1309752 tcttaaaaatataatacgttactttttatcaaataactattacacaattttttcataaaaatttatttattttggatgtttaacca 1309837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 16980027 - 16979942
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||||||||||||||||||| | |||| || ||| || |||||||||||||||||||| |||||||||||||||||    
T  16980027 tcttgaaaatataagatgttacttttgatcgagtaataatcacacaactttttcataaaaatttacttgttttggatgcttaacca 16979942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 465 - 537
Target Start/End: Original strand, 8896626 - 8896698
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttatttt 537  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| |||| |||||| ||||    
T  8896626 tcttaaaaatataagatgttacttttgatcaggtaatgattacacaattttttcatgaaaacttacttgtttt 8896698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 23142686 - 23142766
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataa-ttttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||| |||||||||| |||| |||||| || |||||||||||||| |||||||||||||||| |||||||    
T  23142686 aaatataagatgttatttttgatcaagtaattattacacaacttttttcataaaaacttacttattttggatgtttaacca 23142766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 34993156 - 34993244
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| || |||||||| |||| ||||||  ||| ||||||||| |||||    
T  34993156 tcttaaaaatataagatgttacttttgataaaataataattacacaactttttcatgaaaacttacttgatttagatgcttaatcattg 34993244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 465 - 552
Target Start/End: Original strand, 25530573 - 25530660
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    ||||| |||||||| ||||||| |||||| || ||||||||||| |||||||||||||||| ||| || ||||||||||| |||||||    
T  25530573 tcttagaaatataaaatgttacatttgataaagtaatgattacacaattttttcataaaaacttatttgttttggatgctgaaccatt 25530660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 16685812 - 16685731
Alignment:
Q  471 aaatataagatgttact-tttgatcaaataatgattacataattttttca-taaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||| ||||||||| ||||||||||| || ||||| | |||||| ||||||||||||||||||||||||    
T  16685812 aaatataagatgttactctttgatcaagtaatgattacacaactttttaaataaaaacttacttattttggatgcttaacca 16685731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 17660048 - 17659967
Alignment:
Q  471 aaatataagatgttact-tttgatcaaataatgattacataattttttca-taaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||| ||||||||| ||||||||||| || ||||| | |||||| ||||||||||||||||||||||||    
T  17660048 aaatataagatgttactctttgatcaagtaatgattacacaactttttaaataaaaacttacttattttggatgcttaacca 17659967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 471 - 537
Target Start/End: Complemental strand, 8746215 - 8746149
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttatttt 537  Q
    |||||||  ||||||||||||||||||||||||||| | || ||||||||||||| |||||||||||    
T  8746215 aaatatagaatgttacttttgatcaaataatgattatacaactttttcataaaaacttacttatttt 8746149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 37928385 - 37928300
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||| |||||| ||||||| || |||| |||||| || ||||| ||||||| |||||||||||||||| |||||||    
T  37928385 tcttgaaaatataaaatgttatttttgataaagtaattattacacaacttttttataaaaacttacttattttggatgtttaacca 37928300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 465 - 553
Target Start/End: Complemental strand, 43118891 - 43118803
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||| ||||||| ||||||||| |||||||||||| | |||||  ||||||||||| |||| |||||| ||||||||| |||| |||||    
T  43118891 tcttgaaaatatgagatgttacatttgatcaaatagtaattacgcaattttttcattaaaacttacttgttttggatgattaagcattg 43118803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23056329 - 23056388
Alignment:
Q  1 tggtcactccaaggaatgacagctctagtgactggtggaacacgaggcatagggtcagtt 60  Q
    |||||||||||||| | ||||||||| |||||||| ||||| ||||||||||||||||||    
T  23056329 tggtcactccaagggaagacagctcttgtgactgggggaacccgaggcatagggtcagtt 23056388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 31487744 - 31487823
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||| |||| || || |||| |||||| ||||||||| |||||| ||| |||||||||||| |||||||    
T  31487744 aaatataagatgttattttttattaagtaataattacacaattttttcttaaaaacttatttattttggatgtttaacca 31487823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 548
Target Start/End: Original strand, 41064341 - 41064416
Alignment:
Q  473 atataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaac 548  Q
    |||||||||||||||||||||||| ||||| ||| | || ||||| || |||| ||| ||||||||||||||||||    
T  41064341 atataagatgttacttttgatcaagtaatggttagacaacttttttattaaaacttatttattttggatgcttaac 41064416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 465 - 552
Target Start/End: Complemental strand, 43626432 - 43626345
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    |||| |||| || |||||||| |||| || || |||| |||||| |||||||||||||||||||| ||||||| |||| |||||||||    
T  43626432 tcttgaaaaaattagatgttattttttataaagtaataattacacaattttttcataaaaatttatttattttagatgtttaaccatt 43626345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 529
Target Start/End: Original strand, 18037883 - 18037942
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaattta 529  Q
    |||||||||  ||||||||||||||||||||| |||||||  |||||| |||||||||||    
T  18037883 aaaatataaattgttacttttgatcaaataataattacatcgttttttaataaaaattta 18037942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 30028041 - 30027962
Alignment:
Q  473 atataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    ||||||||||||||||||||| || ||||||| ||| || |||||||| |||  |||||| || |||||| |||||||||    
T  30028041 atataagatgttacttttgataaagtaatgatcacacaactttttcatgaaatcttacttgttatggatgtttaaccatt 30027962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 532
Target Start/End: Complemental strand, 41434786 - 41434719
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttactt 532  Q
    ||||| ||||||||  ||| |||||| |||||||||| ||||||| ||||||| ||||||||||||||    
T  41434786 tcttagaaatataaactgtcactttttatcaaataataattacattattttttaataaaaatttactt 41434719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 11740389 - 11740474
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| |||||||||  |||||||||||||||| |||| ||||||  | ||||| |||||| ||||||| |||||  ||||||||||    
T  11740389 tcttgaaaatataaactgttacttttgatcaactaattattacaccactttttaataaaattttacttcttttgcctgcttaacca 11740474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 19677080 - 19676995
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| |||||||||||||||||||||||| || ||||||||||| |  |||| ||  |||| || ||| ||| |||||||||||||    
T  19677080 tcttgaaaatataagatgttacttttgattaagtaatgattacacaccttttacaccaaaacttgcttgtttaggatgcttaacca 19676995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 517
Target Start/End: Original strand, 10068130 - 10068177
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataatttttt 517  Q
    ||||||||| |||||| ||||||||||||||| |||||| ||||||||    
T  10068130 aaaatataaaatgttatttttgatcaaataattattacacaatttttt 10068177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 548
Target Start/End: Complemental strand, 42888383 - 42888305
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaac 548  Q
    ||||||||||||||| |||||||| || |||||||| || || ||||  || |||| ||||||||||| |||| |||||    
T  42888383 aaaatataagatgttgcttttgataaagtaatgattgcacaaattttctatgaaaacttacttattttagatgtttaac 42888305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 553
Target Start/End: Original strand, 1521241 - 1521317
Alignment:
Q  474 tataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||| ||||||||||||||   | |||||||||  |||||||||||  ||| |||||| ||||||||| ||||||||||    
T  1521241 tataaaatgttacttttgat---acaatgattacgcaattttttcatggaaacttacttgttttggatgtttaaccattg 1521317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 33194807 - 33194722
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||  | | || |||||| || |||||||||||  | |||||  |||||||||||||||||| | ||||||||||    
T  33194807 tcttaaaaatataaactatcacatttgattaagtaatgattacactactttttattaaaaatttacttattttagttgcttaacca 33194722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 12810175 - 12810263
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||||||||| ||||||||||  || |||| |||||| || |||||||| |||   | ||| |||| |||| ||||||||||    
T  12810175 tcttaaaaatataagatattacttttgacaaagtaataattacacaactttttcatgaaagcatgcttgttttagatgtttaaccattg 12810263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 18221020 - 18221100
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcat-aaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||||| |||||| || |||| |||| | || |||||||| ||||| || ||||||||  |||||||||||    
T  18221020 aaatataagatgttacatttgattaagtaataattatacaactttttcataaaaaacttgcttattttaaatgcttaacca 18221100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 51725 - 51646
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  51725 aaatataaaatgttacttttgattaagtaatgattacataattttttcataaaaatttatttattttggatgtttaacca 51646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 465 - 548
Target Start/End: Original strand, 18200709 - 18200792
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaac 548  Q
    |||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  18200709 tcttaaaaatataacatgttacttttgattaagtaatgattacacaattttttcataaaagcttacttattttggatgcttaac 18200792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 11151007 - 11150923
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||  |||||| |||||||||||| |||||||||||    
T  11151007 tcttagaaatataagatgttacttttgatcaaataatgattacacaatttttt-ttaaaaacttacttattttgaatgcttaacca 11150923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 10029241 - 10029162
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||  ||||||||||||||||    
T  10029241 aaatataagatgttacttttgatcaagtaatgattatacaactttttcataaaaatttacttgatttggatgcttaacca 10029162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 43917672 - 43917587
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||||  ||||||||| |||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||    
T  43917672 tcttgaaaatataaggcgttacttttaatcaaataataattacacaatttttttataaaaatttacttgttttggatgcttaacca 43917587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 41726975 - 41726893
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||||||| |||||| |||| || || ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||    
T  41726975 aaatataaaatgttattttttataaagtaatgattacatagttttttcataaaaacttacttattttagatgcttaaccattg 41726893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 550
Target Start/End: Original strand, 35901449 - 35901529
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||| ||||||||||||||| || ||||||||||| || || ||||||||||||| |||||| |||||||||||||||||    
T  35901449 aaaatgtaagatgttacttttaattaaataatgattgcacaactttttcataaaaacttacttgttttggatgcttaacca 35901529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 465 - 552
Target Start/End: Original strand, 18647489 - 18647575
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||| |||||||||||  |||||||||| ||||  |||||||||||||    
T  18647489 tcttaaaaatataagatgtta-ttttgataaaatgatgattacacaattttttcatggaaatttacttgttttaaatgcttaaccatt 18647575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 20542466 - 20542387
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||||||||| || ||||||||||| | ||||||| |||||| |||||  |||||||||||||||||    
T  20542466 aaatataagatgttacttttgattaagtaatgattacacacttttttcttaaaaacttactcgttttggatgcttaacca 20542387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 1342400 - 1342319
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||||||||||||||| ||| |||||||||| || ||||| || |||| ||||||||||| |||||||||||||||    
T  1342400 aaatataagatgttacttttgat-aaacaatgattacacaacttttttatgaaaacttacttattttagatgcttaaccattg 1342319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 471 - 553
Target Start/End: Original strand, 27506980 - 27507062
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||| ||||||||||| ||||||| |||||| || |||||||| ||||||||||| |||| ||||| |||||||||    
T  27506980 aaatataagatattacttttgataaaataataattacacaactttttcatgaaaatttacttgttttagatgcgtaaccattg 27507062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 44648966 - 44649054
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||| ||||||||| |||||||||||||| || ||||||||||| || |||||||| |||| ||| || |||||||||||||| |||||    
T  44648966 tcttgaaaatataaaatgttacttttgataaagtaatgattacacaactttttcatgaaaacttatttgttttggatgcttaatcattg 44649054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 413 - 546
Target Start/End: Original strand, 17720157 - 17720287
Alignment:
Q  413 atcagtgtcctgaggatattggttaagtaatctataaatatttnnnnnnntttcttaaaaatataagatgttacttttgatcaaataatgattacataat 512  Q
    ||||||||||| ||||||||||||||  ||||||||||||          |||||| |||||||||||||||| |||||||||  ||||||||||| ||     
T  17720157 atcagtgtcctcaggatattggttaaagaatctataaata---gaaatattttcttgaaaatataagatgttatttttgatcatgtaatgattacacaac 17720253  T
Q  513 tttttcataaaaatttacttattttggatgctta 546  Q
    |||||||| |||| ||  || |||||||||||||    
T  17720254 tttttcatgaaaacttgtttgttttggatgctta 17720287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 3137485 - 3137400
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||| ||||||||||||||||||||| |||| |||||| || ||||||||| ||| ||| || |||||||||| ||||||    
T  3137485 tcttgaaaatgtaagatgttacttttgatcaagtaattattacacaactttttcatataaacttatttgttttggatgcctaacca 3137400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 13873782 - 13873697
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||| ||||||||||||||| |||| || || |||||||| ||||||||||||||||||| ||| || ||||| ||| |||||||    
T  13873782 tcttagaaatataagatgttatttttaattaagtaatgattgcataattttttcataaaaacttaattgttttgaatgtttaacca 13873697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 34678235 - 34678322
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||| ||||| ||| ||||||||||||||||| |||| ||||||||||||||| || |||| || ||| ||||| ||||||||||||||    
T  34678235 tcttgaaaatgtaaaatgttacttttgatcaagtaataattacataatttttt-attaaaagttgcttgttttgaatgcttaaccattg 34678322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 600451 - 600369
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||||||||||||||| || |||||||| || || |||||||| |||| ||| || |||| |||| ||||||||||    
T  600451 aaatataagatgttacttttgataaagtaatgattgcacaactttttcatgaaaacttatttgttttagatgtttaaccattg 600369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 505
Target Start/End: Complemental strand, 30076249 - 30076211
Alignment:
Q  467 ttaaaaatataagatgttacttttgatcaaataatgatt 505  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30076249 ttaaaaatataagatgttacttttgatcaaataatgatt 30076211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 40489929 - 40489847
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||||||| |||||||| ||||| || |||||||||||||| ||||||||||||| ||| || |||| |||  ||||||||||    
T  40489929 aaatataaaatgttactattgataaagtaatgattacataactttttcataaaaacttatttgttttagatatttaaccattg 40489847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 32881198 - 32881113
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||| ||| |||| ||||| | ||||||||| ||  ||||  |||||| |||||||||||||||| |||||||    
T  32881198 tcttaaaaatataagatattattttttatcaagttatgattacacaacattttattaaaaacttacttattttggatgtttaacca 32881113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 547
Target Start/End: Original strand, 23425310 - 23425377
Alignment:
Q  480 atgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    |||||| |||||||||||||||||||||| || |||||||| ||||  ||||| |||||||| |||||    
T  23425310 atgttatttttgatcaaataatgattacacaactttttcattaaaacgtacttgttttggatacttaa 23425377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 537
Target Start/End: Complemental strand, 29030515 - 29030465
Alignment:
Q  487 ttttgatcaaataatgattacataattttttcataaaaatttacttatttt 537  Q
    |||| |||||||||||||| || |||||||| |||||||||||||||||||    
T  29030515 tttttatcaaataatgattgcacaatttttttataaaaatttacttatttt 29030465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 39065562 - 39065646
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||  ||| |||||| ||||| |||| || |||| ||||||| |||||||||||||| |||| | ||||||||||    
T  39065562 tcttaaaaatataaactgtcactttttatcaagtaataatgacattattttttaataaaaatttacttcttttag-tgcttaacca 39065646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 537
Target Start/End: Original strand, 3347539 - 3347610
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttatttt 537  Q
    |||| ||||||||||||||||||||| || || |||| |||||| ||  ||||||||||||||||| ||||||    
T  3347539 tcttgaaaatataagatgttacttttaataaagtaataattacacaa-cttttcataaaaatttacatatttt 3347610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 31331080 - 31331000
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataa-ttttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||||||||||||| | |||||||| || ||| || |  || |||| ||| |||||||||||||||||    
T  31331080 aaatataagatgttacttttgatcaaacagtgattacacaactttctttaagaacatttgcttgttttggatgcttaacca 31331000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 524
Target Start/End: Complemental strand, 18045368 - 18045309
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaa 524  Q
    |||| ||||||||| |||||||||||| |||  |||| |||||| |||||||||||||||    
T  18045368 tcttgaaaatataatatgttacttttgttcatgtaataattacacaattttttcataaaa 18045309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 550
Target Start/End: Original strand, 23725686 - 23725738
Alignment:
Q  498 taatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||| ||| || |||||||| |||| |||||| |||||||||||||||||    
T  23725686 taatgatcacacaactttttcatgaaaacttacttgttttggatgcttaacca 23725738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 30924212 - 30924267
Alignment:
Q  483 ttacttttgatcaaataatgattacataattttttcataaaaatttacttattttgg 539  Q
    ||||||||||| || |||| ||||||  ||||||| |||||||||||||||||||||    
T  30924212 ttacttttgattaagtaataattacactatttttt-ataaaaatttacttattttgg 30924267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 525
Target Start/End: Complemental strand, 44947432 - 44947372
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaa 525  Q
    |||| ||||||||| |||||||||||||| || || |||||| | || |||||||||||||    
T  44947432 tcttgaaaatataaaatgttacttttgataaagtattgattatacaactttttcataaaaa 44947372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 16341136 - 16341215
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  16341136 aaatataaaatgttacttttgattaagtaatgattacataattttttcataaaaatttatttattttggatgtttaacca 16341215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 20775157 - 20775072
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||| ||||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||    
T  20775157 tcttagaaatataagatattatttttgatcaaataattattacataactttttcataaaaacttacttgttttggatgcttaacca 20775072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 470 - 553
Target Start/End: Complemental strand, 12095038 - 12094955
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||||||||||| ||||||||||| || ||||||||||| || ||||||||||||| |||||||||||||||| |||| |||||    
T  12095038 aaaatataagatattacttttgataaagtaatgattacacaactttttcataaaaacttacttattttggatgtttaaacattg 12094955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 27284151 - 27284072
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||||||||||||||||||||| || || ||||| ||||||| ||| |||||||||||| |||||||    
T  27284151 aaatataagatgttacttttgatcaaataatgattgcacaacttttttataaaaacttatttattttggatgtttaacca 27284072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 470 - 553
Target Start/End: Original strand, 55126811 - 55126895
Alignment:
Q  470 aaaatataagatgttactttt-gatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||| ||||||||||| ||| |||||||||||||| || ||||||||||||| ||| ||||||| ||| |||||||||||    
T  55126811 aaaatataaaatgttactttttgataaaataatgattacacaactttttcataaaaacttatttattttagatacttaaccattg 55126895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 472 - 547
Target Start/End: Original strand, 2824851 - 2824926
Alignment:
Q  472 aatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    ||||||||||||||||||||||||| ||||||||||| ||  |||||||||||| || ||| |||| |||||||||    
T  2824851 aatataagatgttacttttgatcaagtaatgattacacaacattttcataaaaacttgcttgttttagatgcttaa 2824926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 470 - 537
Target Start/End: Complemental strand, 19480617 - 19480550
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttatttt 537  Q
    |||||||||||||||||||||||| || ||||||||||| || ||||||||||||| |||||| ||||    
T  19480617 aaaatataagatgttacttttgataaagtaatgattacacaactttttcataaaaacttacttgtttt 19480550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 470 - 553
Target Start/End: Original strand, 31991491 - 31991574
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||||||||||||||| ||||||| || |||| ||||||  |||||||||| ||||||||||||||||  ||| ||||||||||    
T  31991491 aaaatataagatgttatttttgataaagtaataattacacgattttttcatgaaaatttacttattttatatgtttaaccattg 31991574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 7437863 - 7437942
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||||||||||| ||| | ||||||||| || |||||| |||||| ||  |||||||| |||||||||||    
T  7437863 aaatataagatgttacttttgaacaagtcatgattacacaactttttcgtaaaaacttgtttattttgaatgcttaacca 7437942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 27133628 - 27133549
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||| ||| ||||| |||| ||||||||| | || ||||||||||||| |||| |||||| ||||||||||||    
T  27133628 aaatataagatattatttttgttcaagtaatgattatacaactttttcataaaaacttacctattttagatgcttaacca 27133549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 484 - 550
Target Start/End: Original strand, 52837314 - 52837380
Alignment:
Q  484 tacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||  |||| |||||| || |||||||||||||||| ||| |||||||||||||||||    
T  52837314 tacttttgatcacgtaattattacacaactttttcataaaaattttcttgttttggatgcttaacca 52837380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 520
Target Start/End: Original strand, 31861462 - 31861511
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcat 520  Q
    |||||||||||||||||||||||||| ||||||||||| || ||||||||    
T  31861462 aaatataagatgttacttttgatcaagtaatgattacacaaatttttcat 31861511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 515
Target Start/End: Original strand, 35395351 - 35395399
Alignment:
Q  467 ttaaaaatataagatgttacttttgatcaaataatgattacataatttt 515  Q
    |||||||||||||||||||||||| |||||||||| |||||||| ||||    
T  35395351 ttaaaaatataagatgttacttttaatcaaataataattacatagtttt 35395399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 41142322 - 41142410
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||| |||| ||||| | ||||||||||| ||||||| ||||||| | |||||  | ||||||||||| ||||| ||||||||||||||    
T  41142322 tcttgaaaaaataaggtcttacttttgattaaataataattacattacttttttgtgaaaatttacttgttttgaatgcttaaccattg 41142410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 521
Target Start/End: Original strand, 42595217 - 42595268
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcata 521  Q
    ||||||||| |||||||||||||| || ||||||||||| ||||||||||||    
T  42595217 aaaatataaaatgttacttttgataaagtaatgattacacaattttttcata 42595268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 511
Target Start/End: Complemental strand, 44190304 - 44190258
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataa 511  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||||    
T  44190304 tcttgaaaatataagatgttacttttgatcaagtaataattacataa 44190258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 12076456 - 12076541
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| |||||||||||||||| ||||||||||  |||||| ||| |||||||| || | || |||||| |||| |||| |||||||    
T  12076456 tcttgaaaatataagatgttaattttgatcaagcaatgatcacacaattttttgatgagaacttacttgttttagatgtttaacca 12076541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 552
Target Start/End: Complemental strand, 13967923 - 13967842
Alignment:
Q  472 aatataagatgttacttttgatcaaataatgattacataattttttcata-aaaatttacttattttggatgcttaaccatt 552  Q
    |||||||||||||| |||| ||||| ||||||||| | || ||||||||| |||| |||| | ||||||||| |||||||||    
T  13967923 aatataagatgttattttttatcaagtaatgattatacaactttttcataaaaaaattacatgttttggatgtttaaccatt 13967842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 22611925 - 22612014
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataa-ttttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||||||||||||||||| ||| || ||||||||||  || |||||| ||  ||| |||||||||||  || |||||||||||    
T  22611925 tcttaaaaatataagatgttactttcgataaagtaatgattactcaattttttttatttaaacttacttattttaaatacttaaccattg 22612014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 514
Target Start/End: Original strand, 39810731 - 39810780
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattt 514  Q
    |||| ||||||||||||||||||||||||||| |||| |||||| |||||    
T  39810731 tcttgaaaatataagatgttacttttgatcaagtaataattacacaattt 39810780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 531
Target Start/End: Original strand, 31089819 - 31089878
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttact 531  Q
    |||||||| |||||||||||||| || ||||||||||| || ||||||||||||| |||||    
T  31089819 aaatataa-atgttacttttgataaagtaatgattacacaactttttcataaaaacttact 31089878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 532
Target Start/End: Original strand, 2565439 - 2565506
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttactt 532  Q
    |||| |||| |||| ||||||||||||||||| ||||||||||| || ||||  ||||||| ||||||    
T  2565439 tcttgaaaacataaaatgttacttttgatcaagtaatgattacacaacttttctataaaaacttactt 2565506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 547
Target Start/End: Complemental strand, 43556658 - 43556576
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    ||||||||||||||  |||||  |||||| |||||||||||| || ||||| | || |||||||| || |||| |||||||||    
T  43556658 tcttaaaaatataaagtgttaagtttgattaaataatgattatattattttgttatgaaaatttatttgttttcgatgcttaa 43556576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 517
Target Start/End: Complemental strand, 44639946 - 44639901
Alignment:
Q  472 aatataagatgttacttttgatcaaataatgattacataatttttt 517  Q
    |||||||||||||||||||||| || ||||||||||| || |||||    
T  44639946 aatataagatgttacttttgattaagtaatgattacacaacttttt 44639901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 517
Target Start/End: Original strand, 43970074 - 43970126
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataatttttt 517  Q
    |||||||||||||||||||||||||| || |  |||| |||||| ||||||||    
T  43970074 tcttaaaaatataagatgttacttttaattatgtaataattacacaatttttt 43970126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 550
Target Start/End: Original strand, 44740877 - 44740961
Alignment:
Q  467 ttaaaaatataagatgttacttttgatcaaataatga-ttacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||| |||| | ||| ||||||| || |||| | ||| || ||||||| ||||||||||||||||||||| || |||||||    
T  44740877 ttaaaaatgtaagtttttaattttgatgaagtaattaattaaattatttttttataaaaatttacttattttggttgtttaacca 44740961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 547
Target Start/End: Complemental strand, 46399901 - 46399841
Alignment:
Q  487 ttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    ||||||| || ||||||| ||| |||||||||||||||| ||| || ||||| ||||||||    
T  46399901 ttttgataaagtaatgatcacacaattttttcataaaaacttatttgttttgtatgcttaa 46399841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 26829571 - 26829489
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||||||||||||||| || ||||||||||| || |||||||| |||||||||||||||| |||||||||||||||    
T  26829571 aaatataagatgttacttttgataaagtaatgattacacaactttttcatgaaaatttacttattttagatgcttaaccattg 26829489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 465 - 548
Target Start/End: Original strand, 33148159 - 33148242
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaac 548  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| |||||| ||||| ||| |||||    
T  33148159 tcttaaaaatataagatgctacttttgatcaagtaatgattacacaattttttcataaaaacttacttgttttgaatgtttaac 33148242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 465 - 554
Target Start/End: Original strand, 8001775 - 8001864
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattgg 554  Q
    |||| |||||||||||||||||||||||| || ||||||||||| || |||| ||| ||||||||||| |||| ||||||||||||||||    
T  8001775 tcttgaaaatataagatgttacttttgataaagtaatgattacacaacttttacatgaaaatttacttgttttagatgcttaaccattgg 8001864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 13969127 - 13969212
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||| ||||||||||| || || |||| |||||| |||||||||||||||| |||||| |||||| ||||||||||    
T  13969127 tcttgaaaatataaaatgttacttttaattaagtaattattacacaattttttcataaaaacttacttgttttggttgcttaacca 13969212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 11449145 - 11449073
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttatttt 537  Q
    |||||||||||||| |||||| |||||||||  |||| ||||||||| ||||||||||||| |||||||||||    
T  11449145 tcttaaaaatataatatgttaattttgatcatgtaataattacataactttttcataaaaacttacttatttt 11449073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 470 - 552
Target Start/End: Complemental strand, 27688559 - 27688476
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttactt-attttggatgcttaaccatt 552  Q
    |||||||||||||||||||||||| || ||||||||||| || |||||||| |||| ||||||  ||||| |||||||||||||    
T  27688559 aaaatataagatgttacttttgataaagtaatgattacacaagtttttcatgaaaacttacttgtttttgaatgcttaaccatt 27688476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 465 - 548
Target Start/End: Original strand, 46295899 - 46295982
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaac 548  Q
    |||| ||||||||| ||||||||||||||||| |||| || ||| || ||||||||||||| ||| || |||||||||||||||    
T  46295899 tcttgaaaatataaaatgttacttttgatcaagtaatcatgacacaactttttcataaaaacttatttgttttggatgcttaac 46295982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 483 - 553
Target Start/End: Original strand, 34347556 - 34347626
Alignment:
Q  483 ttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||| || ||||||||||| || ||||||||||| |||||||| |||||||||||||| |||||    
T  34347556 ttacttttgataaagtaatgattacacaactttttcataaagatttacttgttttggatgcttaatcattg 34347626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 553
Target Start/End: Complemental strand, 52860908 - 52860837
Alignment:
Q  483 ttacttttgatcaaataatgattacataa-ttttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||| || ||||||||||| || |||||| || |||||||||||||||| |||||||||||||||    
T  52860908 ttacttttgataaagtaatgattacaaaactttttttattaaaatttacttattttagatgcttaaccattg 52860837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 496 - 550
Target Start/End: Complemental strand, 3529165 - 3529111
Alignment:
Q  496 aataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||| |||||| |||||||| || |||||||||||||||||||||||||||||    
T  3529165 aataataattacacaatttttttatgaaaatttacttattttggatgcttaacca 3529111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 5069575 - 5069494
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||| ||| ||||||| || |||||||||||||| ||||| || |||| ||| ||||||| |||||||||||||||    
T  5069575 aaatataagatattatttttgataaagtaatgattacataacttttt-atgaaaacttatttattttagatgcttaaccattg 5069494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 547
Target Start/End: Original strand, 50015803 - 50015885
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    ||||||||||||| ||| ||||||||||||||  || ||||| | || ||||||||||||||||| || |||||||| |||||    
T  50015803 tcttaaaaatatatgatattacttttgatcaagcaacgattatacaactttttcataaaaatttatttgttttggatacttaa 50015885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 553
Target Start/End: Complemental strand, 37494256 - 37494173
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||| |||||||||||||||| ||||||| || |||||||||||     ||||||| |||| |||||||| || |||||||||||||||    
T  37494256 tcttgaaaatataagatgttatttttgataaagtaatgattaca-----ttttcatgaaaacttacttatcttagatgcttaaccattg 37494173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 552
Target Start/End: Original strand, 17169298 - 17169385
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    |||| |||||||||||||||| ||||||| || |||| |||| | || |||||||| |||| ||| || |||| ||||||||||||||    
T  17169298 tcttgaaaatataagatgttatttttgataaagtaattattatacaactttttcatgaaaacttatttgttttagatgcttaaccatt 17169385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 530
Target Start/End: Original strand, 10226490 - 10226555
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttac 530  Q
    |||| |||||||||||||||| ||||||| || ||||||||||| || |||||||| |||| ||||    
T  10226490 tcttgaaaatataagatgttaattttgataaagtaatgattacacaactttttcatgaaaacttac 10226555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 32187138 - 32187054
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| |||||||||||||||||||||||||| ||||| ||| || ||  ||||||  ||||||||||| ||||| || ||||||||    
T  32187138 tcttgaaaatataagatgttacttttgatcagataataattgcacaa-cttttcaataaaatttacttgttttgaattcttaacca 32187054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 550
Target Start/End: Complemental strand, 38597560 - 38597480
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||| | ||||||||| || ||||||||| | || ||||| || |||| |||||| |||||||| ||||||||    
T  38597560 aaaatataagatatcacttttgattaagtaatgattagacaacttttttattaaaacttacttgttttggatacttaacca 38597480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 39238916 - 39238844
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttatttt 537  Q
    |||||||||| |||| |||||| ||||||||| |||||||||||  |||||||  |||||| |||||| ||||    
T  39238916 tcttaaaaatgtaagttgttacatttgatcaagtaatgattacactattttttattaaaaacttacttgtttt 39238844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 536
Target Start/End: Complemental strand, 48579981 - 48579907
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataa---ttttttcataaaaatttacttattt 536  Q
    ||||| ||||||||||||| | |||| ||||||||||||||||| ||   |||||||||||||  ||||||||||    
T  48579981 tcttagaaatataagatgtaatttttaatcaaataatgattacacaacttttttttcataaaatcttacttattt 48579907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 5069782 - 5069703
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||| ||||||||||||  ||| ||||||||||| ||||| |  | |||| |||||| ||||||||| |||||||    
T  5069782 aaatataaggtgttacttttgactaaacaatgattacatgattttattgtgaaaacttacttgttttggatgtttaacca 5069703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 30941503 - 30941582
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||| |||||| |||| |||||| ||| |||||| || ||||||||  ||| |||||| || ||||||||||||||    
T  30941503 aaatataacatgttattttttatcaaacaataattacacaactttttcatgtaaacttacttgttctggatgcttaacca 30941582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 37597166 - 37597245
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| |||||| ||| |||||||||| ||||||||||  |||| |||||  |||||||  || |||||||||||||||||    
T  37597166 aaatgtaagattttatttttgatcaagtaatgattacgcaattctttcaagaaaatttgtttgttttggatgcttaacca 37597245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 30109307 - 30109229
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacat-aattttttcataaaaatttacttattttggatgcttaa 547  Q
    ||||||||| |||||| |||| |||||| ||||||||||| | |||||| || |||| |||||| ||||||||| ||||    
T  30109307 aaaatataatatgttattttttatcaaacaatgattacatgattttttttattaaaacttacttgttttggatgtttaa 30109229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 553
Target Start/End: Complemental strand, 35540488 - 35540434
Alignment:
Q  499 aatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||| |||| |||||||||||| |||| ||||||||||| ||||||||| |||||    
T  35540488 aatgcttacgtaattttttcatgaaaacttacttattttagatgcttaatcattg 35540434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 517
Target Start/End: Complemental strand, 45748994 - 45748961
Alignment:
Q  484 tacttttgatcaaataatgattacataatttttt 517  Q
    |||||||||||||||||||||| |||||||||||    
T  45748994 tacttttgatcaaataatgattgcataatttttt 45748961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 509
Target Start/End: Original strand, 602758 - 602802
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacat 509  Q
    ||||| ||||||||  ||||||||||||||||| |||||||||||    
T  602758 tcttagaaatataaagtgttacttttgatcaaaaaatgattacat 602802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 1056888 - 1056809
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||||    
T  1056888 aaatataatatgttacttttaatcaaataatgattacataattttttcataaaaacttatttgttttggatacttaacca 1056809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 30293851 - 30293936
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||  || ||||| ||| |||||||    
T  30293851 tcttaaaaatataagatgttacttttgatcaagtaatgattacataattttttcatgaaaacttgtttgttttgaatggttaacca 30293936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 465 - 548
Target Start/End: Complemental strand, 27544674 - 27544591
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaac 548  Q
    |||| |||||||||||||||| |||| ||||  ||||||||||| || |||||||| ||||||||||| ||||||||| |||||    
T  27544674 tcttgaaaatataagatgttattttttatcatgtaatgattacacaactttttcatgaaaatttacttgttttggatgtttaac 27544591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 465 - 547
Target Start/End: Original strand, 30840626 - 30840707
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| || |||||  | |||| |||||| ||||||||||||||    
T  30840626 tcttgaaaatataagatgttacttttgatcaagtaatgattacacaacttttt-ttgaaaacttacttgttttggatgcttaa 30840707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 11815996 - 11815924
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttatttt 537  Q
    |||| |||||||||||||||||||||||| || ||||||||||| |  ||||||||||||| |||||| ||||    
T  11815996 tcttgaaaatataagatgttacttttgataaagtaatgattacacatatttttcataaaaacttacttgtttt 11815924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 470 - 550
Target Start/End: Complemental strand, 36482131 - 36482052
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||||||||||||||||||| ||||| || ||||| || |||| ||| ||||||| |||| |||||||    
T  36482131 aaaatataagatgttacttttgatcaaataatgtttacacaacttttttatgaaaactta-ttattttagatgtttaacca 36482052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 1920774 - 1920859
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||| ||||||||| |||||||||||| ||||||||||| |||| |||||||  | |||| || ||| |||||||| ||||||||    
T  1920774 tcttagaaatataaggtgttacttttgaccaaataatgatgacatcatttttttgtgaaaactttcttcttttggatacttaacca 1920859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 471 - 552
Target Start/End: Complemental strand, 6646367 - 6646286
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    |||||||| |||||||||||||| |  ||||||||||| ||||||||||| || |||||||| |||| |||| |||| ||||    
T  6646367 aaatataatatgttacttttgataatgtaatgattacacaattttttcattaatatttacttgttttagatgtttaaacatt 6646286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 465 - 537
Target Start/End: Complemental strand, 7718575 - 7718502
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataa-ttttttcataaaaatttacttatttt 537  Q
    ||||||||||||||||||||| |||| || ||||||| |||||| || |||||||||||||| ||| |||||||    
T  7718575 tcttaaaaatataagatgttatttttaatgaaataatcattacacaatttttttcataaaaacttatttatttt 7718502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 22294063 - 22293984
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||| ||  ||||||||||||||| ||| || || ||||||||||||| |||||| ||||| ||| |||||||    
T  22294063 aaatataagatattggttttgatcaaataattattgcacaactttttcataaaaacttacttgttttgaatgtttaacca 22293984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 27366005 - 27366084
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||| ||||||| || ||||||||||||||  ||||||||||| ||||  |  || |||||||||||||||||    
T  27366005 aaatataagatattactttagaccaaataatgattacgcaattttttcatgaaaacatgtttgttttggatgcttaacca 27366084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 517
Target Start/End: Original strand, 2089150 - 2089196
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataatttttt 517  Q
    ||||||||||| ||||||||||||||||||| |||||| ||||||||    
T  2089150 aaatataagattttacttttgatcaaataattattacacaatttttt 2089196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 41645112 - 41645037
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    |||||||||||| ||| |||| ||||| ||||||||||| || |||  ||| |||||||||||||||| |||||||||    
T  41645112 aaaatataagatattattttttatcaagtaatgattacacaacttt--catgaaaatttacttattttagatgcttaa 41645037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 538
Target Start/End: Original strand, 8151828 - 8151899
Alignment:
Q  470 aaaatataagatgttacttttgatcaa--ataatgattacataattttttcat-aaaaatttacttattttg 538  Q
    ||||||||||||||||||||| |||||  ||||| |||| |||| ||||| || ||||||||||||||||||    
T  8151828 aaaatataagatgttacttttaatcaagtataataattatataacttttttatgaaaaatttacttattttg 8151899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 42491719 - 42491639
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacat-aattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||  |||||||||||| |||||||| ||||||| | ||||||  |||||| || ||| |||||||||||||||||    
T  42491719 aaatataaagtgttacttttgagcaaataataattacatcattttttttgtaaaaactttcttgttttggatgcttaacca 42491639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 8435136 - 8435057
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||  ||| |||||||| ||| |||| |||| |  ||||||| ||||||  ||||||||||||||||||||||||    
T  8435136 aaatataaagtgtaacttttgaccaactaataattataccattttttaataaaatcttacttattttggatgcttaacca 8435057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 14044714 - 14044768
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaa 525  Q
    ||||||||||| |||||||||||||| |||| |||||| || ||||| |||||||    
T  14044714 aaatataagatattacttttgatcaagtaattattacacaacttttttataaaaa 14044768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 470 - 548
Target Start/End: Complemental strand, 40346788 - 40346710
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaac 548  Q
    |||||||||||||||| ||||||||||||||||||| || || ||||||||||||| ||||||||||||||| ||||||    
T  40346788 aaaatataagatgttatttttgatcaaataatgattgcacaactttttcataaaaacttacttattttggatacttaac 40346710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 467 - 548
Target Start/End: Complemental strand, 18717933 - 18717852
Alignment:
Q  467 ttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaac 548  Q
    |||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||  || |||||||||||||||    
T  18717933 ttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttcatgaaaatttgtttgttttggatgcttaac 18717852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 470 - 550
Target Start/End: Original strand, 13738428 - 13738508
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||||| |||| || ||||||||||| |||||||| ||||||| |||||| |||||||||||||||||    
T  13738428 aaaatataagatgttacttctgataaagtaatgattacacaatttttttataaaaacttacttgttttggatgcttaacca 13738508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 553
Target Start/End: Complemental strand, 41436410 - 41436322
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||| || |||||||||||| ||||||| |||||||||||||| || |||||||| |||| |||||| ||||||||||||||||||||    
T  41436410 tcttagaagtataagatgttatttttgataaaataatgattacacaactttttcatgaaaacttacttgttttggatgcttaaccattg 41436322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 4978780 - 4978865
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||  |||| ||||||| ||| |||||||||||| |||||||    
T  4978780 tcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaacca 4978865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 4996688 - 4996773
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||  |||| ||||||| ||| |||||||||||| |||||||    
T  4996688 tcttgaaaatataagatgttacttttgatcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaacca 4996773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 14953109 - 14953024
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||| |||||| |||||||| | ||||||||| | ||||||||  || ||||||||||||||||||||||||||||    
T  14953109 tcttaaaaatataaaatgttatttttgatcgagtaatgattagacaatttttttttacaaatttacttattttggatgcttaacca 14953024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 31904251 - 31904335
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||| |||||||||||||||| |||| |||||||    
T  31904251 tcttaaaaatataaaatgttatttttaatcaagtaatgattacacaattttttcat-aaaatttacttattttagatgattaacca 31904335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 550
Target Start/End: Complemental strand, 6315967 - 6315887
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||||| |||||||||| ||||||||||| |||||||| | ||||||||| || ||||||||| |||||||    
T  6315967 aaaatataagatgttatttttgatcaagtaatgattacacaatttttttacaaaaatttatttgttttggatgtttaacca 6315887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 23453430 - 23453344
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataa-ttttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||| || ||| |||||||| ||||||||    
T  23453430 tcttgaaaatataagatgttacttttgatcaaataaagattacacaactttttccataaaaacttgcttgttttggatacttaacca 23453344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 28331288 - 28331367
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||| || ||| |||||||||| ||||||||||| || | ||||||||||| |||||||||||| |||||||||||    
T  28331288 aaatataaaatattatttttgatcaagtaatgattacacaactctttcataaaaacttacttattttgaatgcttaacca 28331367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 475 - 550
Target Start/End: Original strand, 43080344 - 43080418
Alignment:
Q  475 ataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||||||| | ||| ||||||||| |||||||||||||||||||  || |||||||||||||||||    
T  43080344 ataagatgttacttttga-ctaattatgattacacaattttttcataaaaatttgattgttttggatgcttaacca 43080418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 552
Target Start/End: Original strand, 32909439 - 32909523
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataa---ttttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    ||||||||||| ||||||||||| || |||| |||||||||   |||||| ||||||| ||| ||||||||||||||||| ||||    
T  32909439 aaatataagatattacttttgataaagtaattattacataacatttttttaataaaaacttatttattttggatgcttaatcatt 32909523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 553
Target Start/End: Original strand, 40574177 - 40574259
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||||||| |||| |||||||||  | |||| |||||| || |||||||| ||||| ||||| ||||||||||||||||||||    
T  40574177 aaatataaaatgtaacttttgatagagtaataattacacaactttttcatgaaaatgtacttgttttggatgcttaaccattg 40574259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 3689653 - 3689730
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||||||||||   |||||||||||||| ||| |||||||| | | ||| |||||| ||||||||||    
T  3689653 aaatataagatgttacttttgatcg--taatgattacataactttatcataaaattgtgcttgttttggctgcttaacca 3689730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 525
Target Start/End: Original strand, 38024209 - 38024268
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaa 525  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||| ||||    
T  38024209 tcttaaaaatataagatattacttt-gatcaaataataattacataactttttcattaaaa 38024268  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 4557651 - 4557568
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataa-ttttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||||||||| |||| |||||||  | |||| |||||  || |||||||||||||| |||||||| ||||||||||||||||||    
T  4557651 aaatataagaagttatttttgattgagtaattattactcaacttttttcataaaaacttacttatcttggatgcttaaccattg 4557568  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 8580591 - 8580512
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||||||||| || |||| |||| | |  |||||||| |||| | ||||| ||||||||||||||||    
T  8580591 aaatataagatgttacttttgattaagtaataattagacacatttttcatgaaaactaacttactttggatgcttaacca 8580512  T

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Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 552
Target Start/End: Complemental strand, 13717262 - 13717176
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    |||| ||||||||| |||||| |||| || || |||| ||||||||| ||||| || |||| ||||||||||| ||||||||||||||    
T  13717262 tcttgaaaatataaaatgttatttttaat-aagtaataattacataactttttgatgaaaacttacttattttagatgcttaaccatt 13717176  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 42251692 - 42251607
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||| |||||||| |||||| |||| ||||   |||||||||| || ||||||||  ||| |||||| |||||||||||||||||    
T  42251692 tcttagaaatataacatgttattttttatcattcaatgattacacaactttttcatgtaaacttacttgttttggatgcttaacca 42251607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 1004803 - 1004890
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||| ||||||||| || ||||||||||| |||| ||||||||| || ||||||||||||| ||  || |||| ||| |||||||||||    
T  1004803 tcttgaaaatataaaatattacttttgat-aaattatgattacacaactttttcataaaaacttttttgttttagatccttaaccattg 1004890  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 517
Target Start/End: Complemental strand, 7141199 - 7141147
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataatttttt 517  Q
    |||| |||| ||||| |||||||||||| |||||||||||||||| |||||||    
T  7141199 tcttgaaaacataaggtgttacttttgaccaaataatgattacattatttttt 7141147  T

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Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 9021552 - 9021473
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| |||||||||| ||||||  ||||||||||||||  |||||||  | |||| || |||||||||||| ||||||||    
T  9021552 aaatgtaagatgttatttttgactaaataatgattacactatttttttgtgaaaactttcttattttggatacttaacca 9021473  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 27896542 - 27896463
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||| |||||||||||||  | |||| |||||| || ||||| || |||| ||||||||||||| || |||||||    
T  27896542 aaatataagctgttacttttgatttagtaataattacacaactttttaattaaaacttacttattttggttgtttaacca 27896463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 552
Target Start/End: Original strand, 29526329 - 29526416
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    |||||||||||||| || ||| |||| || || ||||||||||| |||||||| || ||||  ||||||||||  ||| |||||||||    
T  29526329 tcttaaaaatataaaatattatttttaataaagtaatgattacacaatttttttatgaaaacctacttattttaaatgtttaaccatt 29526416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 43681304 - 43681359
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaa 525  Q
    |||||||||||||||| |||| | ||||||||||||| | || |||||||||||||    
T  43681304 aaaatataagatgttattttttaccaaataatgattatacaactttttcataaaaa 43681359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 531
Target Start/End: Original strand, 3201166 - 3201232
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttact 531  Q
    |||| ||||||| | || ||||||||||| || ||||||||||| |||||||| ||||||| |||||    
T  3201166 tcttgaaaatatgaaatattacttttgattaactaatgattacacaattttttgataaaaacttact 3201232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 550
Target Start/End: Original strand, 5525324 - 5525398
Alignment:
Q  476 taagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||| ||||| ||||||||||||| |  | |||||  |||||| ||||||||||| | ||||||||||    
T  5525324 taagatgttacatttgaccaaataatgattatactactttttattaaaaacttacttattttagttgcttaacca 5525398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 547
Target Start/End: Complemental strand, 18857519 - 18857437
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    |||||||||||| | ||||||  |||||| || |||| ||||||  || ||||||| ||||||||||| ||||| ||||||||    
T  18857519 tcttaaaaatatgatatgttatctttgataaagtaataattacacgatattttcatgaaaatttacttgttttgaatgcttaa 18857437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 33609202 - 33609287
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||| |||| ||||||||||| |||||||||||||| | ||||  |||||||  |||||| ||| |||||||   ||||||||||    
T  33609202 tcttagaaatgtaagatgttacatttgatcaaataataagtacactattttttattaaaaacttatttattttaattgcttaacca 33609287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 6462619 - 6462707
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||| |||||||| || ||||||||||| ||||||| |||| | || ||||| || |||| ||| || ||||| |||||||| |||||    
T  6462619 tcttataaatataaaatattacttttgataaaataataattatacaacttttttattaaaacttatttgttttgaatgcttaatcattg 6462707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 553
Target Start/End: Complemental strand, 44698303 - 44698215
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| || |||| |||  ||||||||||    
T  44698303 tcttgaaaatataagatgttacttttgataaaataatgattacacaattttttcataaaaacttatttgttttagatatttaaccattg 44698215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 54801358 - 54801446
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||| |||||||||||||||||||||| | || |||| |||||| |||||||||||||||| |||||||||||| ||||||||| ||||    
T  54801358 tcttgaaaatataagatgttacttttgctaaagtaataattacacaattttttcataaaaacttacttattttgtatgcttaactattg 54801446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 471 - 554
Target Start/End: Complemental strand, 50958939 - 50958856
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattgg 554  Q
    |||||||| |||||| ||||||||||  |||||||||| |||||||||||||||| |||||| |||||||||||||| ||||||    
T  50958939 aaatataacatgttatttttgatcaagaaatgattacacaattttttcataaaaacttacttgttttggatgcttaagcattgg 50958856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 465 - 547
Target Start/End: Complemental strand, 29032497 - 29032415
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| || ||| |||| ||| |||||    
T  29032497 tcttaaaaatataagatgttacttttgatcaagtaatgattacacaactttttcataaaaacttgcttgttttagatacttaa 29032415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 549
Target Start/End: Original strand, 31494039 - 31494117
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacc 549  Q
    |||||||||| |||| |||| ||||||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  31494039 aaatataagaagttaattttaatcaaataatgattacacaattttttcataaaaacttacttgttttggatgtttaacc 31494117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 49261859 - 49261777
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||||||||||||||||||||||  | |||| |||||| ||||||||||| ||||| ||||| ||||||||||||||||||||    
T  49261859 aaatataagatgttacttttgatagagtaataattacacaattttttcatgaaaatgtacttgttttggatgcttaaccattg 49261777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 28709594 - 28709679
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||| ||||||||||||||||||||||||||| | || ||||| ||| ||| |||||||||||| |||||||||||    
T  28709594 tcttgaaaatataaaatgttacttttgatcaaataatgattatacaacttttttatagaaacttacttattttgaatgcttaacca 28709679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 553
Target Start/End: Original strand, 4128726 - 4128809
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    |||||||||||| ||| ||||||| || ||||||||||| ||| ||||||| |||| |||||| ||||||||||||||||||||    
T  4128726 aaaatataagatattatttttgataaagtaatgattacacaatattttcatgaaaacttacttgttttggatgcttaaccattg 4128809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 48338892 - 48338810
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||||||| ||||||| || |||| |||||| || ||||| ||||||| |||||| ||||||||||||||||||||    
T  48338892 aaatataagatgttatttttgataaagtaattattacacaacttttttataaaaacttacttgttttggatgcttaaccattg 48338810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 550
Target Start/End: Complemental strand, 40460307 - 40460227
Alignment:
Q  470 aaaatataagatgtt-acttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||| |||||||||||| || ||||||||    
T  40460307 aaaatataagatgtttacttttgat-aaataatgattacataatattttcatgaaaacttacttattttgtattcttaacca 40460227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 4020183 - 4020098
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||| |||||| ||||||| || |||| |||||| |||||||||||||||| |||||| |||||| | ||||||||    
T  4020183 tcttgaaaatataaaatgttaattttgattaagtaattattacacaattttttcataaaaacttacttgttttggttacttaacca 4020098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 11676764 - 11676849
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||| ||||||||| | |||| || ||| ||||||||| |||||||    
T  11676764 tcttgaaaataaaagacgttacttttgatcaaataatgataacacaattttttcttgaaaacttgcttgttttggatgtttaacca 11676849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 474 - 550
Target Start/End: Original strand, 42437753 - 42437827
Alignment:
Q  474 tataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||||||||||   |||||||||||||| |||||||||||| ||| | | |||||||||||||||||    
T  42437753 tataagatgttacttttgatcg--taatgattacataactttttcataaaattttgcgtgttttggatgcttaacca 42437827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 550
Target Start/End: Original strand, 635743 - 635818
Alignment:
Q  475 ataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||||||| |||||||||||||| || ||||  ||||||| |||  | |||||||||||||||||    
T  635743 ataagatgttacttttgattaaataatgattacacaacttttcaataaaaacttatatgttttggatgcttaacca 635818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 3215126 - 3215038
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaat----aatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||||||||| ||||||||||| |    ||||||||||||||||||| |||||||||||||| ||||  || ||||||||    
T  3215126 tcttgaaaatataagatgttgcttttgatcaagtaataaatgattacataatttttt-ataaaaatttacttgttttttatccttaacca 3215038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 517
Target Start/End: Original strand, 25958087 - 25958139
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataatttttt 517  Q
    ||||||||||||||||||||||||||||| || ||| ||||||| ||||||||    
T  25958087 tcttaaaaatataagatgttacttttgataaagtaacgattacacaatttttt 25958139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 26613099 - 26613179
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataa-ttttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||| |||||| |||| ||||| |||| ||||||||| |||||| || |||| |||||| |||||||||||||||||    
T  26613099 aaatataaaatgttatttttaatcaagtaataattacataactttttttatgaaaacttacttgttttggatgcttaacca 26613179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 547
Target Start/End: Original strand, 34145939 - 34146014
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    ||||||||||||||| |||||||||| |||| |||| | ||||| ||||| ||||||||||  ||||||||||||||    
T  34145939 aaatataagatgttatttttgatcaagtaataattatacaatttgttcat-aaaatttactagttttggatgcttaa 34146014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 465 - 553
Target Start/End: Complemental strand, 38359132 - 38359044
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||| ||||||||||||||| ||||||| || ||| ||||||  |  |||||||| |||| ||||||||||| |||| ||||||||||    
T  38359132 tcttagaaatataagatgttaattttgataaagtaacgattacccatctttttcatgaaaacttacttattttagatgtttaaccattg 38359044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 55446811 - 55446733
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||||||||| || || ||||||||||| || ||||| ||||||| |||||| |||| |||| |||||||    
T  55446811 aaatataagatgttacttttaataaagtaatgattacacaacttttt-ataaaaacttacttcttttagatgtttaacca 55446733  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 6785822 - 6785908
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacata-attttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||| |  ||||||||| |||| || ||| |||| |||| |||||||    
T  6785822 tcttgaaaatataaaatgttacttttgatcaagtaatgattacacatcttttttcatgaaaacttgcttgtttttgatgtttaacca 6785908  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 31475194 - 31475114
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||||| | |||| ||| | ||||||||||| || |||||||||||| ||||| | ||||||||||||||||||||    
T  31475194 aaatataagatgtaattttttatcgagtaatgattacacaa-tttttcataaaagtttac-tgttttggatgcttaaccattg 31475114  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 553
Target Start/End: Complemental strand, 47334945 - 47334857
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccattg 553  Q
    ||||||||||||||||  ||| |||| || |||||||||||||| || ||||  ||||||||||| || ||||  ||| ||||||||||    
T  47334945 tcttaaaaatataagactttattttttataaaataatgattacacaacttttcaataaaaatttatttgttttaaatgtttaaccattg 47334857  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 1711952 - 1712037
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||||||||||| |||||  || |||| |||| |  |||||||  |||||||||||||||||| | || |||||||    
T  1711952 tcttgaaaatataagatgttacatttgactaagtaataattatactattttttattaaaaatttacttattttagttgtttaacca 1712037  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 508
Target Start/End: Complemental strand, 8326220 - 8326179
Alignment:
Q  467 ttaaaaatataagatgttacttttgatcaaataatgattaca 508  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  8326220 ttaaaaatataatatgttacttttgatcaagcaatgattaca 8326179  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 550
Target Start/End: Complemental strand, 25319543 - 25319463
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||| |||||||||||||  |||||||||||||| |  |||| ||| |||| ||| || |||| |||| |||||||    
T  25319543 aaaatataaaatgttacttttgactaaataatgattacacaccttttacattaaaacttaattgttttagatgtttaacca 25319463  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 547
Target Start/End: Complemental strand, 53818889 - 53818829
Alignment:
Q  487 ttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaa 547  Q
    |||| ||||| ||||||||| | || |||||||| |||| ||| |||||||||||||||||    
T  53818889 ttttaatcaagtaatgattatacaactttttcattaaaacttatttattttggatgcttaa 53818829  T

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Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 552
Target Start/End: Original strand, 8636783 - 8636859
Alignment:
Q  476 taagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    |||||||||||||||||| || |||||||||||||| |||||||| |||| |||||||||||| |||||||| ||||    
T  8636783 taagatgttacttttgataaagtaatgattacataactttttcatgaaaacttacttattttgtatgcttaatcatt 8636859  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 5611157 - 5611242
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||| |||||||||||||||||||| |||||||||| |||| | || || |||||||||| |||||| ||||||||| |||||||    
T  5611157 tcttagaaatataagatgttacttttaatcaaataataattatacaacttattcataaaaacttacttgttttggatgtttaacca 5611242  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 470 - 552
Target Start/End: Complemental strand, 227415 - 227331
Alignment:
Q  470 aaaatataagatgttacttttgatcaaat-aatgattacataatttttt-cataaaaatttacttattttggatgcttaaccatt 552  Q
    |||||||||||||||||||||||| |||  |||||||||| |||||||| |||||||  |||||| |||||||||||||||||||    
T  227415 aaaatataagatgttacttttgataaaaacaatgattacacaatttttttcataaaatcttacttcttttggatgcttaaccatt 227331  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 465 - 537
Target Start/End: Original strand, 33121339 - 33121411
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttatttt 537  Q
    |||| |||||||||||||||| |||| |||||| |||||||||| || |||||||| ||||||||||||||||    
T  33121339 tcttgaaaatataagatgttattttttatcaaacaatgattacacaactttttcatgaaaatttacttatttt 33121411  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 550
Target Start/End: Original strand, 17345872 - 17345955
Alignment:
Q  467 ttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||| ||||||||||||||||| ||  |||||||||| |||||||  |||||||| || ||||| |||||||||||    
T  17345872 ttaaaaatataaaatgttacttttgatcaagtagcgattacataactttttcactaaaatttatttgttttgaatgcttaacca 17345955  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 472 - 550
Target Start/End: Complemental strand, 32134124 - 32134046
Alignment:
Q  472 aatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||| |||| ||||| ||||||||||| || |||||||  |||| ||||||||||| ||||||||||||    
T  32134124 aatataagatgttattttttatcaagtaatgattacacaactttttcaagaaaacttacttattttagatgcttaacca 32134046  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 2470430 - 2470351
Alignment:
Q  471 aaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||| ||| ||||| |||| ||||||||| | || ||||||||||||| |||| |||||| ||||||||||||    
T  2470430 aaatataagatattatttttgttcaagtaatgattatacaactttttcataaaaacttacctattttagatgcttaacca 2470351  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 27082377 - 27082311
Alignment:
Q  484 tacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||||||||||||||||| |||||| || |||||||| ||||||||||| |||||| || |||||||    
T  27082377 tacttttgatcaaataatcattacacaactttttcatgaaaatttacttgttttggttgtttaacca 27082311  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 10008278 - 10008193
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||   ||||||||||||||| |||| ||||||  | ||||| ||||||| |||||| |||||| ||||||||||    
T  10008278 tcttaaaaatataaacggttacttttgatcaagtaataattacaccactttttaataaaaacttacttcttttggttgcttaacca 10008193  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 465 - 550
Target Start/End: Complemental strand, 19418680 - 19418595
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||  |||||||||||| ||  |||| ||||||| | ||||| ||||||  |||||| |||||||||||||||||    
T  19418680 tcttaaaaatataaactgttacttttgaccagctaattattacatcactttttaataaaatcttacttcttttggatgcttaacca 19418595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 532
Target Start/End: Complemental strand, 18493328 - 18493261
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttactt 532  Q
    |||| ||||||||| ||||||||||||||||| |||| |||||| || ||||| ||||||| ||||||    
T  18493328 tcttgaaaatataaaatgttacttttgatcaagtaattattacaaaacttttttataaaaacttactt 18493261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 548
Target Start/End: Original strand, 19659647 - 19659725
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaac 548  Q
    ||||||| |||| |||  ||||||||| ||||||||||| || ||||| ||||||| ||||||||||| |||| |||||    
T  19659647 aaaatatgagatattatatttgatcaactaatgattacacaacttttttataaaaacttacttattttagatgtttaac 19659725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 517
Target Start/End: Complemental strand, 1397113 - 1397060
Alignment:
Q  465 tcttaaaaatataagat-gttacttttgatcaaataatgattacataatttttt 517  Q
    |||| |||||||||| | |||||||||||||||||||| |||||||||||||||    
T  1397113 tctttaaaatataagtttgttacttttgatcaaataataattacataatttttt 1397060  T

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Target: scaffold0204 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 15394 - 15479
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaacca 550  Q
    |||| ||||||||||||||||||||||| ||| ||| ||||| | |  ||||||||||||| |||||||||||| ||| |||||||    
T  15394 tcttgaaaatataagatgttacttttgaccaagtaacgattatacacatttttcataaaaacttacttattttgaatgtttaacca 15479  T

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Target: scaffold0329 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 7444 - 7394
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataatttt 515  Q
    |||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  7444 tcttgaaaatataagatattacttttgatcaaataatgattacacaatttt 7394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 538
Target Start/End: Original strand, 30020 - 30088
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttg 538  Q
    ||||||||||||||||||||| || ||||||| |||||| ||  |||||||||||| |||||| |||||    
T  30020 aaaatataagatgttacttttaattaaataataattacacaaacttttcataaaaacttacttgttttg 30088  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 552
Target Start/End: Complemental strand, 120754 - 120667
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaatttacttattttggatgcttaaccatt 552  Q
    |||| |||||||||||||| ||||||| | || ||| |||| || || |||| || ||||| |||||||||||||||| |||||||||    
T  120754 tcttgaaaatataagatgtcacttttggtaaagtaacgattgcacaacttttccacaaaaacttacttattttggatgtttaaccatt 120667  T

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Target: scaffold0299 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 550
Target Start/End: Original strand, 18044 - 18130
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataa-ttttttcataaaaatttacttattttggatgcttaacca 550  Q
    ||||||||||||||| | | ||||||||| || |||| |||||| || |||||| ||||||| |||||| |||||| ||||||||||    
T  18044 tcttaaaaatataagttttgacttttgattaagtaataattacacaactttttttataaaaagttacttgttttggttgcttaacca 18130  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 506
Target Start/End: Complemental strand, 36612 - 36576
Alignment:
Q  470 aaaatataagatgttacttttgatcaaataatgatta 506  Q
    |||||||||||||||||||||||| ||||||||||||    
T  36612 aaaatataagatgttacttttgattaaataatgatta 36576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 525
Target Start/End: Complemental strand, 3410 - 3350
Alignment:
Q  465 tcttaaaaatataagatgttacttttgatcaaataatgattacataattttttcataaaaa 525  Q
    |||| ||||||||| |||||||||||||| || || |||||| | || |||||||||||||    
T  3410 tcttgaaaatataaaatgttacttttgataaagtattgattatacaactttttcataaaaa 3350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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