View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2653_low_6 (Length: 542)
Name: NF2653_low_6
Description: NF2653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2653_low_6 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 16 - 532
Target Start/End: Complemental strand, 45243282 - 45242755
Alignment:
| Q |
16 |
gtaagttctagaagataaagaataagagagatagggataaaca--------tcatatattatggtgtatgtattttgatgtcgaaataacataactgcat |
107 |
Q |
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| T |
45243282 |
gtaagttctagaagataaagaataagagagatagggataaacacatctgtatcatattttatggtgtatgtattttgatgtcgaaataacataactgcat |
45243183 |
T |
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| Q |
108 |
tttattagaggtcaaatcgaatcaactttttgtatcgtttgtttatgtacatatttttacatgattttgaaaatgactgcatgttgaatttcgaaagaaa |
207 |
Q |
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| T |
45243182 |
tttattagaggtcaaatcgaatcaactttttgtgtcgtttgtttatgtacatatttttacatgattttgaaaatgactgcatgttgaatttcgaaagaaa |
45243083 |
T |
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| Q |
208 |
caataaagagtgtatgttttgtgtgtgacgaagaaaagcattaagctagacaacaattcattttcatataaatttagttagagaaagaatctcgatatga |
307 |
Q |
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| T |
45243082 |
caataaagagtgtatgttgtgtgtgtgacgaagaaaagcattaagctagacaacaattcattttcatataaatttagttaaagaaagaacctcgatatga |
45242983 |
T |
|
| Q |
308 |
attgannnnnnnncctcttcgttattttatatatcctcactcctaaatcatcattttgacgagcttatctctgagttgagactattccaccctgctgtgg |
407 |
Q |
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| T |
45242982 |
attgattttttttcctcttcgttattttatatatcctcactcctaaatcatcattttgacgagcttatttctgagttgagactattccaccctgctgtgg |
45242883 |
T |
|
| Q |
408 |
tatccgtgtataagaaaaatgttgtttagaaatttgtgtatagtgaaattcctccagattaatgtacagttcctgtttaaaatgggttgctgc---tgct |
504 |
Q |
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| T |
45242882 |
tatccgtgtataagaaaaatgttgtttagaaatttgtgtatagtgaaattcctccagattaatgtacagttcctgtttaaaatgggttgctgctgttgtt |
45242783 |
T |
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| Q |
505 |
gtttatatctatattcttatgtgatatt |
532 |
Q |
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| T |
45242782 |
gtttatatctatattcttatgtgatatt |
45242755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 8576845 - 8576934
Alignment:
| Q |
67 |
tatggtgtatgtattttgatgtcgaaataacataactgcattttattagaggtcaaatcgaatcaacttt-ttgtatcgtttgtttatgt |
155 |
Q |
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| T |
8576845 |
tatggtgtatgtattttgatgttgaaataacacaactgcattttgttagaggtcaaattgaatcacctttcttgtgtagtttgtttatgt |
8576934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 410
Target Start/End: Original strand, 9061857 - 9061925
Alignment:
| Q |
344 |
tcactcctaaatcatcattttgacgagcttatctctga--gttgagactattccaccctgctgtggtat |
410 |
Q |
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| T |
9061857 |
tcactcctaaataattattttggccaacttatttctgaatgtggagactattccaccctgctgtggtat |
9061925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 410
Target Start/End: Complemental strand, 9315536 - 9315508
Alignment:
| Q |
382 |
gttgagactattccaccctgctgtggtat |
410 |
Q |
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| T |
9315536 |
gttgagactattccaccctgctgtggtat |
9315508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 418
Target Start/End: Original strand, 12019601 - 12019637
Alignment:
| Q |
382 |
gttgagactattccaccctgctgtggtatccgtgtat |
418 |
Q |
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| T |
12019601 |
gttgagactattccaccctgttgtggtatctgtgtat |
12019637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 402
Target Start/End: Complemental strand, 2058 - 2000
Alignment:
| Q |
346 |
actcctaaatcatcattttgacgagcttatctctga--gttgagactattccaccctgc |
402 |
Q |
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| T |
2058 |
actcctaaataattattttgaccagcttatttctgaatgttgagactattccaccctgc |
2000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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