View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2654_high_10 (Length: 243)
Name: NF2654_high_10
Description: NF2654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2654_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 13274627 - 13274853
Alignment:
| Q |
3 |
cacagataacatgattcattgattcaagaaaaaatgaattccaaatggacattttttctattagccattgcaacaatattagtgataggaaatgcacaaa |
102 |
Q |
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| T |
13274627 |
cacacataacatgattcattgattcaagaaaaaatgaattccaaatggacattttttctattagccattgcaacaatattagtgataggaaatgcacaaa |
13274726 |
T |
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| Q |
103 |
catcagtgaagccattggtgaaaacggtaaagggaaagaaactatgtgacaaagggtgggaatgtaaaggttggtcagtgtattgttgcaatgagactat |
202 |
Q |
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| T |
13274727 |
catcagtgaagccattggtgaaaacggtaaagggaaagaaactatgtgacaaagggtgggaatgtaaaggttggtcagtgtattgttgcaatgagactat |
13274826 |
T |
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| Q |
203 |
atctgattatttccaaacataccaatt |
229 |
Q |
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| T |
13274827 |
atccgattatttccaaacataccaatt |
13274853 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 47522564 - 47522611
Alignment:
| Q |
147 |
tgtgacaaagggtgggaatgtaaaggttggtcagtgtattgttgcaat |
194 |
Q |
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| T |
47522564 |
tgtgacaaaggttgggaatgtaaaggttggtcgatttattgttgcaat |
47522611 |
T |
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