View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2654_high_5 (Length: 266)
Name: NF2654_high_5
Description: NF2654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2654_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 35630627 - 35630376
Alignment:
| Q |
12 |
atgaaatataaacaaaaacgataattgaatatgaatcaaaaatatattcttatgtaattacatatttatccgtcgatttaaacacaannnnnnnnatttt |
111 |
Q |
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| T |
35630627 |
atgaaatataaataaaaacgataattgaatatgaatcaagaatatattcttatgtaattacatatttatccgtcgattcaaacacaatttttt---tttt |
35630531 |
T |
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| Q |
112 |
aaatattacaaattcaatttgataatatagctctcagctcatcctctgtcagtttatcatcgattattcgctacttcttaccatacatatcaagataaat |
211 |
Q |
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| T |
35630530 |
taatattacaaattcaatttgataatatagttctcagctcattctttatcagtttatcatcgattatctgctacttcttaccatacatatcaagataaat |
35630431 |
T |
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| Q |
212 |
caattaaagtatgtttaaatagaaactctcaatatcatttgccttgaaatgactt |
266 |
Q |
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| T |
35630430 |
caattaaagtatgttgaaatagaaactctcaatatcatttgccttgaaatgactt |
35630376 |
T |
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