View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2654_low_1 (Length: 482)
Name: NF2654_low_1
Description: NF2654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2654_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 25 - 475
Target Start/End: Complemental strand, 21298539 - 21298093
Alignment:
| Q |
25 |
ctctttttacttattttcattgtatttgtgtctaaaccaaataaatttgtgcttctgaccatgcaagaattaatccaacttgtatctcatatcagtttgg |
124 |
Q |
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| T |
21298539 |
ctctttttacttattttcattgtatgtgtgtctaaaccaaataaatttgtgcttttgaccatgcaagaattaatccaacttgtatctcatatcagtttgg |
21298440 |
T |
|
| Q |
125 |
atttgagattgttgccaccttcttcctttttctccttatactacaaatttaact--aattgtttcttaacattttcgaagtagttctccacggcattgat |
222 |
Q |
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| T |
21298439 |
atttgagattgttgccaccttcttcctttttctgcttatactacaaatttaactttaattgtttcttaacattttcgaagtagttctccacggcattgat |
21298340 |
T |
|
| Q |
223 |
attataggacttattcaatgtatgtctaaattttatccgattatgatattattgtaaattgattataaaataatgttgaattaacaaaattgtgttctcg |
322 |
Q |
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| T |
21298339 |
attataggacttattcaatgtatgtctaaattttatccgattatgatattattgtaaattgattataaaataatgttgaattaacaaaattgtgttctcg |
21298240 |
T |
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| Q |
323 |
ctttcatgttaaagtacgacaacaaaatattggtccgaaaacactgtaccgaacacatacatgaattgctatattatgaactgcaaattcagtatttatt |
422 |
Q |
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| T |
21298239 |
ctttcat------gtacgacaacaaaatattggttcgaaaacactgtaccgaacacatacatgaattgctatattatgaactgcaaattcagtatttatt |
21298146 |
T |
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| Q |
423 |
ttatgttcggtgtattctaactttatatagtgcccaaataattagtgcctttg |
475 |
Q |
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| T |
21298145 |
ttatgttcggtatattctaactttatatagtgcccaaataattagtgtctttg |
21298093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 36836220 - 36836163
Alignment:
| Q |
28 |
tttttacttattttcattgtatttgtgtctaaaccaaataaatttgtgcttctgacca |
85 |
Q |
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| T |
36836220 |
tttttacttacttttattgtatctgtgtctaaaccaaacatatttgtggttgtgacca |
36836163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 38942508 - 38942451
Alignment:
| Q |
100 |
caacttgtatctcatatcagtttggatttgagattgttgccaccttcttcctttttct |
157 |
Q |
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| T |
38942508 |
caacttgtatttcatatcagtttggatctgcgattgttaactctttcttcctttttct |
38942451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 41007803 - 41007873
Alignment:
| Q |
25 |
ctctttttacttattttcattgtatttgtgtctaaaccaaataaatttgtgcttctgaccatgcaagaatt |
95 |
Q |
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| T |
41007803 |
ctctttttacttattttcattgtatgtgtgtctaaaccaaatatatttatggttgtgaccatacaaaaatt |
41007873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 43868456 - 43868411
Alignment:
| Q |
30 |
tttacttattttcattgtatttgtgtctaaaccaaataaatttgtg |
75 |
Q |
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| T |
43868456 |
tttacttattttcattgtatctgtgtctaaaccaaatatatttgtg |
43868411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 318
Target Start/End: Original strand, 35433970 - 35434070
Alignment:
| Q |
218 |
ttgatattataggacttattcaatgtatgtctaaattttatccgattatgatattattgtaaattgattataaaataatgttgaattaacaaaattgtgt |
317 |
Q |
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| T |
35433970 |
ttgatatcataggatttattcgatatatgtatagattttatcagattacgatgttaatgaaaatggattatgaaatcttgttgaattaataaaattgtgt |
35434069 |
T |
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| Q |
318 |
t |
318 |
Q |
| |
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| T |
35434070 |
t |
35434070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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