View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2654_low_11 (Length: 249)
Name: NF2654_low_11
Description: NF2654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2654_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 7709968 - 7710187
Alignment:
| Q |
11 |
cacagatcgcaaatatatcgccagaatcaaagcaataatctgagaatgaaaacaagaaaaataatcaagaaaaatttgaatgatttgagatttcaatata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7709968 |
cacagatcgcaaatatatcgccagaatcaaagcaataatctgagaatgaaaacaagaaaa-taatcaagaaaaatttgaatgatttgagatttcaatata |
7710066 |
T |
|
| Q |
111 |
aagaaatgtaccaaaatttgtatatgtttgctttctctattcaatagattgtgtatctaatgttacctgtaatataaattctccaagagctatccatctg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7710067 |
aagaaatgtaccaaaatttgtatatgtttgctttctctattcaatagattgtgtatctaatgttacctgtaatataaattctccaagagctatccatctg |
7710166 |
T |
|
| Q |
211 |
atgattttccaatggtcattg |
231 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
7710167 |
aagattttccaatggtcattg |
7710187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University