View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2654_low_2 (Length: 471)

Name: NF2654_low_2
Description: NF2654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2654_low_2
NF2654_low_2
[»] chr4 (9 HSPs)
chr4 (262-458)||(27539997-27540193)
chr4 (87-146)||(27540321-27540381)
chr4 (325-399)||(17970348-17970422)
chr4 (325-443)||(27502824-27502942)
chr4 (316-399)||(27475587-27475670)
chr4 (316-399)||(27503971-27504054)
chr4 (295-449)||(27556366-27556520)
chr4 (176-206)||(27540260-27540290)
chr4 (295-449)||(27559227-27559381)
[»] chr3 (4 HSPs)
chr3 (325-458)||(55084776-55084909)
chr3 (328-451)||(38043900-38044023)
chr3 (325-451)||(50913493-50913619)
chr3 (319-399)||(50911880-50911960)
[»] chr2 (1 HSPs)
chr2 (325-399)||(3073618-3073692)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 262 - 458
Target Start/End: Complemental strand, 27540193 - 27539997
Alignment:
Q  262 tattaagaatcaactgatgatatgatgtttaaaaaagaatcttcactgcaacgtatggttagtccacccattggatgatggtacccaaattcttcctctg 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  27540193 tattaagaatcaactgatgatatgatgtttaaaaaagaatcttcactgcaaggaatggttagtccacccattggatgatggtacccaaattcttcctctg 27540094  T
Q  362 ccttgcttagcaagtcttgaaatgaaggttgattcaagcatccaataggaatcacgacccgcttcatattttctccaacatacactgcaacacaccc 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27540093 ccttgcttagcaagtcttgaaatgaaggttgattcaagcatccaataggaatcacgaaccgcttcatattttctccaacatacactgcaacacaccc 27539997  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 27540381 - 27540321
Alignment:
Q  87 taataacacaattcaatttaatttagtccata-tatatgcagaaatttcatgatcaataat 146  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27540381 taataacacaactcaatttaatttagtccataatatatgcagaaatttcatgatcaataat 27540321  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 17970422 - 17970348
Alignment:
Q  325 ccacccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgattcaag 399  Q
    |||||||||||||||| ||| || |||||||||||||||   || ||||||| ||||||||||| ||| ||||||    
T  17970422 ccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttcaag 17970348  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 443
Target Start/End: Original strand, 27502824 - 27502942
Alignment:
Q  325 ccacccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgattcaagcatccaataggaatcacgacccgct 424  Q
    |||||||||||||| |  || |||||||||||| | || | ||| ||||||||||||||||||| |||||||||  ||   || |||||||| | |||||    
T  27502824 ccacccattggatggtcatatccaaattcttccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattggaatcacaaaccgct 27502923  T
Q  425 tcatattttctccaacata 443  Q
    |||| || ||||| |||||    
T  27502924 tcatcttctctcctacata 27502942  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 27475587 - 27475670
Alignment:
Q  316 atggttagtccacccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgattcaag 399  Q
    ||||| || |||||||| |||||||  || ||||| |||||||| || |  || | ||||||||||||||||||||||||||||    
T  27475587 atggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaag 27475670  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 27504054 - 27503971
Alignment:
Q  316 atggttagtccacccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgattcaag 399  Q
    ||||| || ||||||||||||||||  || ||||| |||||||| || |  || | ||||||||||||||||||||| ||||||    
T  27504054 atggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaag 27503971  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 449
Target Start/End: Original strand, 27556366 - 27556520
Alignment:
Q  295 aaagaatcttcactgcaacgtatggttagtccacccattggatgatggtacccaaattcttcctctgccttgct-tagcaagtcttgaaatgaaggttga 393  Q
    |||| ||||||||||||  | || || || |||||||| | |||||  || ||||||||||| ||||| ||| | ||| || |||||||||||||||||     
T  27556366 aaagcatcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgc-ttgatgtagtaattcttgaaatgaaggttgg 27556464  T
Q  394 ttcaagcatccaataggaatcacgacccgcttcatattttctccaacatacactgc 449  Q
    |||||  ||  ||| |||||||| |  |||||||| |||||||||||||| |||||    
T  27556465 ttcaataatgaaatgggaatcacaaatcgcttcattttttctccaacataaactgc 27556520  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 27540290 - 27540260
Alignment:
Q  176 ctcagtgcccttacattttccacttttgcat 206  Q
    |||||||||||||||||||||||||||||||    
T  27540290 ctcagtgcccttacattttccacttttgcat 27540260  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 449
Target Start/End: Original strand, 27559227 - 27559381
Alignment:
Q  295 aaagaatcttcactgcaacgtatggttagtccacccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgat 394  Q
    |||| ||||||||||||| | || || || ||||||||||||||||  || ||||| ||||| ||||  | |||||  || | ||||||||||| |||||    
T  27559227 aaagcatcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttctgattggcttaataactattgaaatgaagattgat 27559326  T
Q  395 tcaagcatccaataggaatcacgacccgcttcatattttctccaacatacactgc 449  Q
    ||||  ||  |||||||||||  |  | |||||| || ||||||||||| |||||    
T  27559327 tcaataatgaaataggaatcagaaatctcttcattttgtctccaacataaactgc 27559381  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 458
Target Start/End: Complemental strand, 55084909 - 55084776
Alignment:
Q  325 ccacccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgattcaagcatccaataggaatcacgacccgct 424  Q
    |||||||||||||||| ||| |||||||||||||| |||   || | ||||||||||||||| ||||| |||||| |    ||||| ||||| | |||||    
T  55084909 ccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagtcttgaaatgatggttggttcaagtaagacatagggatcacaaaccgct 55084810  T
Q  425 tcatattttctccaacatacactgcaacacaccc 458  Q
    |||| || ||||||||||||||||||| ||||||    
T  55084809 tcattttctctccaacatacactgcaagacaccc 55084776  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 451
Target Start/End: Complemental strand, 38044023 - 38043900
Alignment:
Q  328 cccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgattcaagcatccaataggaatcacgacccgcttca 427  Q
    |||||||||||||  || ||||||||||||||||| |  || |||||||||||||| |||| |||||||||| ||   ||||| ||||| | ||||||||    
T  38044023 cccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatgacatagggatcacaaaccgcttca 38043924  T
Q  428 tattttctccaacatacactgcaa 451  Q
    | |  |||||||  ||||||||||    
T  38043923 tttcctctccaaagtacactgcaa 38043900  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 451
Target Start/End: Complemental strand, 50913619 - 50913493
Alignment:
Q  325 ccacccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgattcaagcatccaataggaatcacgacccgct 424  Q
    |||||||||||||||  ||| |||||||| || || || | ||| ||||| ||||||||| |||| | ||||||| ||   || ||||||| || || ||    
T  50913619 ccacccattggatgacagtagccaaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatcaagaacctct 50913520  T
Q  425 tcatattttctccaacatacactgcaa 451  Q
    |||| || |||||||||||||||||||    
T  50913519 tcattttctctccaacatacactgcaa 50913493  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 50911880 - 50911960
Alignment:
Q  319 gttagtccacccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgattcaag 399  Q
    ||||| ||||||||||| ||||  || ||||||||||||||||| |  || | ||||| ||||||||||| ||| ||||||    
T  50911880 gttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagcttggttcaag 50911960  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 3073692 - 3073618
Alignment:
Q  325 ccacccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgattcaag 399  Q
    |||||||||||||||| ||| || |||||||||||||||   || ||||||| ||||||||||| ||| ||||||    
T  3073692 ccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttcaag 3073618  T

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