View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2654_low_3 (Length: 445)

Name: NF2654_low_3
Description: NF2654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2654_low_3
NF2654_low_3
[»] chr2 (9 HSPs)
chr2 (19-431)||(410444-410856)
chr2 (182-397)||(821334-821549)
chr2 (190-425)||(1399988-1400220)
chr2 (185-385)||(973644-973844)
chr2 (185-397)||(1403734-1403946)
chr2 (185-385)||(965073-965279)
chr2 (286-397)||(957815-957926)
chr2 (96-166)||(957658-957728)
chr2 (31-160)||(973157-973285)
[»] chr3 (2 HSPs)
chr3 (182-398)||(45810113-45810329)
chr3 (101-166)||(45810023-45810088)
[»] chr7 (2 HSPs)
chr7 (187-397)||(12105508-12105718)
chr7 (182-390)||(28449412-28449617)
[»] chr6 (1 HSPs)
chr6 (190-392)||(10116388-10116590)
[»] chr1 (1 HSPs)
chr1 (182-327)||(48675087-48675232)
[»] chr5 (1 HSPs)
chr5 (275-392)||(36199331-36199445)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 410856 - 410444
Alignment:
Q  19 caaacactatcgttcaaaacaaattaaaatcaacatagcataaggtgaaagtttacaatgacctttataacaacacgtagtgcatcaaacgaccaaatcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410856 caaacactatcgttcaaaacaaattaaaatcaacatagcataaggtgaaagtttacaatgacctttataacaacacgtagtgcatcaaacgaccaaatcc 410757  T
Q  119 aacaatttcatggtagaagatattgaagcaaaagacagaataaagaaactaccactactttcatatcaataaattgaaagttgacatgttgtagaagccc 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410756 aacaatttcttggtagaagatattgaagcaaaagacagaataaagaaactaccactactttcatatcaataaattgaaagttgacatgttgtagaagccc 410657  T
Q  219 ttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaataaattttgc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410656 ttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaaactcttgcattctttagaataaattttgc 410557  T
Q  319 taacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatgaaaagcaaggtgaaacaaattcggaatcc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  410556 taacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaatagtgcaagttgtaaggtttaacgaaaagcaaggtggaacaaattcggaatcc 410457  T
Q  419 acccaatattctt 431  Q
    ||||||| |||||    
T  410456 acccaattttctt 410444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 182 - 397
Target Start/End: Complemental strand, 821549 - 821334
Alignment:
Q  182 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 281  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||  |||||| | ||||||| || ||| ||||| ||||||| | |||| |||||||    
T  821549 tatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcagattgtttattgttgctccagattgtcatag 821450  T
Q  282 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaag 381  Q
    ||  ||||||||| |||||||| ||||||||| |||||||||||||||||  |  |||| ||||||||| ||| |||||||| ||| |||||||||||||    
T  821449 tttctaaaactctcgcattcttcagaataaatattgctaacataatgtgattacattgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaag 821350  T
Q  382 gtttaatgaaaagcaa 397  Q
    ||||||||||| ||||    
T  821349 gtttaatgaaacgcaa 821334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 190 - 425
Target Start/End: Complemental strand, 1400220 - 1399988
Alignment:
Q  190 aattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaa 289  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||| ||||||| |||| | |  | || ||| |||| |||| | |||||||  ||||    
T  1400220 aattgaaagttgacatgttacagaagcccttggacatgagaataatactctttctgctttgggccatctcatgtagcaccagattggcatagtttctaaa 1400121  T
Q  290 actcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatg 389  Q
    |||||||||||||  ||||||||  |||||||||||||| ||  | ||||| ||||| ||    | |||||||| ||| |||||||||||||||||||||    
T  1400120 actcttgcattctgcagaataaaccttgctaacataatgcgattacgttgttggccttca---tcaaagtcccgcatattgcaagttgtaaggtttaatg 1400024  T
Q  390 aaaagcaaggtgaaacaaattcggaatccacccaat 425  Q
    |||  |||  || |||| |||| | |||||||||||    
T  1400023 aaagacaacttggaacagattcaggatccacccaat 1399988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 185 - 385
Target Start/End: Original strand, 973644 - 973844
Alignment:
Q  185 caataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttc 284  Q
    |||| ||||||||| |||||||||| ||||||| |||| ||||  |||||| | |||||||  | |||  ||||  |||||| | ||||  ||||||||     
T  973644 caattaattgaaagctgacatgttgcagaagcctttgggcatggagataattgactttctatatcagatcgtttactgttgctccagattttcatagttt 973743  T
Q  285 gtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtt 384  Q
    ||||||||||||| ||||  ||||||||| |||||||||||||||||  | ||||| |||||||| |||| |||||||  ||| ||||||||||||||||    
T  973744 gtaaaactcttgcgttctccagaataaatcttgctaacataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgtaaggtt 973843  T
Q  385 t 385  Q
    |    
T  973844 t 973844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 185 - 397
Target Start/End: Complemental strand, 1403946 - 1403734
Alignment:
Q  185 caataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttc 284  Q
    |||| ||||| |||||||||||||| ||| ||| |||||||||||||||||| ||||||| |||||| |  | |||||| |||| |||| | |||||||     
T  1403946 caatcaattgtaagttgacatgttgcagatgcctttggacatgaggataatactctttctgctttaggccatctcttgtagcaccagattgacatagttt 1403847  T
Q  285 gtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtt 384  Q
     ||||||||||||||| |  ||||||||  |||||||||||||| ||  | | ||| || || |||   | |||||||| ||| ||||||||||||||||    
T  1403846 ctaaaactcttgcattatccagaataaaccttgctaacataatgcgattacggtgttggtctacaacaacaaagtcccgcatattgcaagttgtaaggtt 1403747  T
Q  385 taatgaaaagcaa 397  Q
    |||||||| ||||    
T  1403746 taatgaaaggcaa 1403734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 385
Target Start/End: Original strand, 965073 - 965279
Alignment:
Q  185 caataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttct------actttagactgtttcttgttgcacaagatagtca 278  Q
    ||||| ||||| |||||||||| || |||||||||  ||||||| ||||||| |||||||      |||||||||  |||| ||| |||| | || | ||    
T  965073 caatacattgagagttgacatgctgaagaagccctatgacatgatgataatactctttctaattctactttagaccctttcgtgtagcaccacattgaca 965172  T
Q  279 tagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgt 378  Q
    |||||  |||||||||||||||||  ||||||||| |||||| ||||||||||  | ||||| |||||||| |||| |||||||  ||| ||||||||||    
T  965173 tagtttctaaaactcttgcattctccagaataaatcttgctagcataatgtgattacgttgttggcctgcatatgcaaagtcccacatagtgcaagttgt 965272  T
Q  379 aaggttt 385  Q
    |||||||    
T  965273 aaggttt 965279  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 397
Target Start/End: Original strand, 957815 - 957926
Alignment:
Q  286 taaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggttt 385  Q
    ||||||||| |||||||| |||||||||  |||||| ||||  |||  |  |||| ||||||||| ||| |||||||| ||| |||||||||||||||||    
T  957815 taaaactctcgcattcttcagaataaataatgctaaaataagatgattactttgttggcctgcaagtgcaaagtcccgcatagtgcaagttgtaaggttt 957914  T
Q  386 aatgaaaagcaa 397  Q
    ||||||| ||||    
T  957915 aatgaaaggcaa 957926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 957658 - 957728
Alignment:
Q  96 tagtgcatcaaacgaccaaatccaacaatttcatggtagaagatattgaagcaaaagacagaataaagaaa 166  Q
    |||| |||||||| || ||||||||||||||||||||||||| || |||| |||||||||||||| |||||    
T  957658 tagttcatcaaaccactaaatccaacaatttcatggtagaagctaatgaaacaaaagacagaatagagaaa 957728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 973157 - 973285
Alignment:
Q  31 ttcaaaacaaattaaaatcaacatagcataaggtgaaagtttacaatgacctttataacaacacgtagtgcatcaaacgaccaaatccaacaatttcatg 130  Q
    |||||||||||| |||||||||| ||||||  |||||  ||||  | |||||| |||||||||  |||  ||  |||| ||||||| ||||  || ||||    
T  973157 ttcaaaacaaatgaaaatcaacaaagcatagagtgaacttttatgacgaccttcataacaacatatagctcactaaaccaccaaattcaactgttacatg 973256  T
Q  131 gtagaagatattgaagcaaaagacagaata 160  Q
    ||||||| || |||| ||||||||||||||    
T  973257 gtagaagctaatgaa-caaaagacagaata 973285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 182 - 398
Target Start/End: Original strand, 45810113 - 45810329
Alignment:
Q  182 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 281  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||| ||||||| ||||  || ||||| | || |||||||    
T  45810113 tatcaataaattgaaagttgacattttgcagaagcccttggacatgaagataatagtttttctattttagaccgttttctgctgcaccaaattgtcatag 45810212  T
Q  282 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaag 381  Q
    ||  ||||||| |||||||||| ||||||||  ||||||||||||  |||  | |||||| |||||||||||| |||||||| ||| ||||||| || ||    
T  45810213 tttctaaaacttttgcattcttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagtcgtgag 45810312  T
Q  382 gtttaatgaaaagcaag 398  Q
    ||||||||||| |||||    
T  45810313 gtttaatgaaaggcaag 45810329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 45810023 - 45810088
Alignment:
Q  101 catcaaacgaccaaatccaacaatttcatggtagaagatattgaagcaaaagacagaataaagaaa 166  Q
    ||||||||  |||||||||||||||||| |||||||| || |||| |||| || |||||| |||||    
T  45810023 catcaaacagccaaatccaacaatttcaaggtagaagctaatgaaacaaaggagagaatagagaaa 45810088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 397
Target Start/End: Complemental strand, 12105718 - 12105508
Alignment:
Q  187 ataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgt 286  Q
    ||||||||||||||||||||||| |||||| |||| ||| |||| |||| ||||||||| || ||||||||||  |  |||| |||| | |||| ||  |    
T  12105718 ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgtctttctatttcagactgtttcccgaagcaccagattgacatattttct 12105619  T
Q  287 aaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggttta 386  Q
    |||||| ||| |||||| ||||||||||||||||||||||||||| ||   ||||||||| ||| ||| ||||| || ||  | |||||| ||||||||     
T  12105618 aaaactgttgaattcttcagaataaattttgctaacataatgtgataactctgtaggcctccaattgcaaagtcacggatcgtacaagttctaaggtttg 12105519  T
Q  387 atgaaaagcaa 397  Q
    |||||| ||||    
T  12105518 atgaaaggcaa 12105508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 182 - 390
Target Start/End: Original strand, 28449412 - 28449617
Alignment:
Q  182 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 281  Q
    |||||||||| |||||||||||| ||||| || |||||||||||||||||||||   ||||||| || ||  ||||  || |  | | | ||  |||| |    
T  28449412 tatcaataaactgaaagttgacaagttgtggatgcccttggacatgaggataattccctttctatttgaggttgttctttatcactccatatcatcatgg 28449511  T
Q  282 ttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaag 381  Q
    || |||||||||||||||| || |||||| || |||||| |||||||| |   | ||||||| || ||||||| |||||||||||| |||||||||||||    
T  28449512 tttgtaaaactcttgcattattaagaatatatcttgctagcataatgtca---ttttgtaggtctacaaatgcaaagtcccgaatagtgcaagttgtaag 28449608  T
Q  382 gtttaatga 390  Q
     | ||||||    
T  28449609 atgtaatga 28449617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 190 - 392
Target Start/End: Original strand, 10116388 - 10116590
Alignment:
Q  190 aattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatagttcgtaaa 289  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| | |||||||| ||||||| |||||  |   ||| |||| | |||||||  ||||    
T  10116388 aattgaaagtttacatgttgaagaagcccttggacatgaggataacactctttctattttagaccgtttcccgcaacaccagattgacatagtttctaaa 10116487  T
Q  290 actcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaagttgtaaggtttaatg 389  Q
    ||||| |||||||  ||||||||  | |||| |||||||||| ||   |||||||||| |||| | || ||||| ||| | ||||||||||||||| |||    
T  10116488 actctcgcattctcaagaataaacctagctagcataatgtgataacactgtaggcctgaaaattcaaattcccgcatagtacaagttgtaaggtttgatg 10116587  T
Q  390 aaa 392  Q
    |||    
T  10116588 aaa 10116590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 327
Target Start/End: Original strand, 48675087 - 48675232
Alignment:
Q  182 tatcaataaattgaaagttgacatgttgtagaagcccttggacatgaggataatagtctttctactttagactgtttcttgttgcacaagatagtcatag 281  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||   ||||||| || ||  || | ||||| || | | || |||||||    
T  48675087 tatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcatag 48675186  T
Q  282 ttcgtaaaactcttgcattctttagaataaattttgctaacataat 327  Q
    || |||||||| ||||||| ||||||||| || |||||||||||||    
T  48675187 tttgtaaaacttttgcattatttagaatatatcttgctaacataat 48675232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 392
Target Start/End: Complemental strand, 36199445 - 36199331
Alignment:
Q  275 gtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataatgtgacaatgttgtaggcctgcaaatgcgaagtcccgaataatgcaag 374  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||||||| ||     ||||||||| || |||| ||||||||||||||| ||||||    
T  36199445 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataaggt---cgtgttgtaggtctacaaaagcgaagtcccgaatagtgcaag 36199349  T
Q  375 ttgtaaggtttaatgaaa 392  Q
    || |||| | ||||||||    
T  36199348 ttctaagatataatgaaa 36199331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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