View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2654_low_9 (Length: 266)
Name: NF2654_low_9
Description: NF2654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2654_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 28831203 - 28830943
Alignment:
| Q |
1 |
tttccaccgctgtttagtgaaagtcatatgataaaatattaggacataaaccttccggtcatttttataaaagacattttaagtttgtgtgtggtctctt |
100 |
Q |
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| T |
28831203 |
tttccaccgctgtttagtgaaagtcatatgataaaatattaggacataaaccttccggtcatttttataaaagacattttaagtttgtgtgtggtctctt |
28831104 |
T |
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| Q |
101 |
tgcatgactcacaatttaatccatacgaataaaacctagtgttattggttgaatacggataactcagcaaaatttgtgtttcatgcttaattatgtacat |
200 |
Q |
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| T |
28831103 |
tgcatgactcacaatttaatccatacgaataaaacctagtgttattggttgaatacggataactcagcaaaatttgtgtttcatgcttaattatgtacat |
28831004 |
T |
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| Q |
201 |
gttatgtgattaaaccagtttgcttaattaatatgaaatcatgttctactaatatattctt |
261 |
Q |
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| T |
28831003 |
gttatgtgattaaaccagtttgcttaattaatatgaaatcatgttccactaatattttctt |
28830943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 9450000 - 9450098
Alignment:
| Q |
24 |
tcatatgataaaatattaggacataaaccttccggtcatttttataaaagacattttaagtttgtgtgtggtctctttgcatgactcacaatttaatcc |
122 |
Q |
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| T |
9450000 |
tcatatgataaaatattagtggatactcattccggtcatttttataagagaaattttaagtttgtttgtggtctcttcgcatgactcgcaatttaatcc |
9450098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 28839217 - 28839121
Alignment:
| Q |
24 |
tcatatgataaaatattaggacataaaccttccggtcatttttataaaagacattttaagtttgtgtgtggtctctttgcatgactcacaatttaat |
120 |
Q |
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| T |
28839217 |
tcatatgataaaatattagtaaatacttattccggtcaattttataagataaattttaagtttgtttgtggtctcttcacatgactcacaatttaat |
28839121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 46922993 - 46922951
Alignment:
| Q |
156 |
cggataactcagcaaaatttgtgtttcatgcttaattatgtac |
198 |
Q |
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| T |
46922993 |
cggataactcagcaaaatttgtgtttcatgcttaattatgtac |
46922951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 28839084 - 28839034
Alignment:
| Q |
204 |
atgtgattaaaccagtttgcttaattaatatgaaatcatgttctactaata |
254 |
Q |
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| T |
28839084 |
atgtgattaaactagttttcttaattaatatgaaatcatgttccactaata |
28839034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 47467104 - 47466971
Alignment:
| Q |
128 |
aataaaacctagtgttattggttgaatacggataactcagcaaaatttgtgtttcatgcttaattatgtacatgttatgtgattaaaccagtttgct--t |
225 |
Q |
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| T |
47467104 |
aataaaaccgattgtcattggtcgaatgcggataactcagcaaaatttgtgtttcatgcttagttgtgtccatgttatgtgattaaaccaatttgcttat |
47467005 |
T |
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| Q |
226 |
aattaatatgaaatcatgttctactaatatattc |
259 |
Q |
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| T |
47467004 |
aattaatgtgaaatcatgttctactaatatattc |
47466971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 255
Target Start/End: Original strand, 47227481 - 47227646
Alignment:
| Q |
92 |
tggtctctttgcatgactcacaatttaat-ccatacgaataaaacctagtgttattggttgaatacggataactcagcaaaatttgtgtttcatgcttaa |
190 |
Q |
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|||||||||||||| ||||| || ||||| ||||||||||||||| | |||||||||||||||||| ||| |||||| ||||||||||| ||||||||| |
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| T |
47227481 |
tggtctctttgcataactca-aagttaatcccatacgaataaaactgattgttattggttgaatacgtatagctcagccaaatttgtgttccatgcttaa |
47227579 |
T |
|
| Q |
191 |
ttatgtacatgttatgtgattaaaccagtttgctt--aattaatatgaaatcatgttctactaatat |
255 |
Q |
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|||| ||||||||| ||||||||||||||||||| |||||| || |||||||||| |||||||| |
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| T |
47227580 |
ttatatacatgttacatgattaaaccagtttgcttaaaattaacgtgcaatcatgttccactaatat |
47227646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 1466062 - 1466210
Alignment:
| Q |
24 |
tcatatgataaaatattaggacataaaccttccggtcatttttataaaagacattttaagtttgtgtgtggtctctttgcatgactcacaatttaatcc- |
122 |
Q |
| |
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|||||||||| |||||||| | ||| | ||| |||||||||| ||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
1466062 |
tcatatgatacaatattagtaaatactcattctggtcatttttgtaagagaaattttaagtttgtttgtggtctcttcttatgactcacaatttaatccc |
1466161 |
T |
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| Q |
123 |
----atacgaataaaacctagtgttattggttgaatacggataactcag |
167 |
Q |
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||| ||||| ||| ||||||||||||||||||||||||| |||| |
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| T |
1466162 |
atatatatgaatacaactgagtgttattggttgaatacggataaatcag |
1466210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 1466203 - 1466253
Alignment:
| Q |
211 |
taaaccagtttgcttaattaatatgaaatcatgttctactaatatattctt |
261 |
Q |
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|||| |||||| |||||||||||||||||||| ||| |||||||| ||||| |
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| T |
1466203 |
taaatcagttttcttaattaatatgaaatcatattccactaatattttctt |
1466253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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