View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2655_high_12 (Length: 430)
Name: NF2655_high_12
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 429
Target Start/End: Original strand, 9436393 - 9436820
Alignment:
| Q |
8 |
cgaagaaaatgctagcttgcctcttgtaaaaggaagcattcctctggtggaaaacnnnnnnnnnctca--gacctttcaaagaacccataatttggtctt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
9436393 |
cgaagaaaatgctagcttgcctcttgtaaaaggaagcattcctctggtggaaaacaaaaaaaa-ctcatagacctttcaaagaacccataatttggtctt |
9436491 |
T |
|
| Q |
106 |
aaataagtgaacacgcaaagatttgtgaagtttcaaagatgcatcttcgtctgttatttaaacatctttacctaaattaatacggcttcatctgcttgac |
205 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9436492 |
aaataagtgaacacgaaaagatttgtgaagtttcaaagatgcatcttcttctgttatttaaacttctttacctaaattaatatggcttcatctgcttgac |
9436591 |
T |
|
| Q |
206 |
acaaacaacgtatcatctggtcatgagtcactcccttacaattcctatacatcatttacttacaaaccccttaatcggtataacgtggtatcgatgttgt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9436592 |
acaaacaacgtatcatctggtcatgagtcactcccttacaattcctatacatcatttacttacaaaccccttaatcggtataacgtggtttcgatgttgt |
9436691 |
T |
|
| Q |
306 |
gaagtataagttcagtgacaagaggatcactgtgaaattagtgca-----taatagggtgtttattaagcgcag-atgtagtgctctgataataaataag |
399 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
9436692 |
gaagtataagttcagtaacaagaggatcactgtgaaattagtgcattgagtaata-ggtgtttattaaacgcagaatgtagtgctctgataataaataag |
9436790 |
T |
|
| Q |
400 |
gatttaggagttacaattagagtttatatt |
429 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
9436791 |
gatttaggagctacaattagagtttatatt |
9436820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 9389794 - 9389933
Alignment:
| Q |
8 |
cgaagaaaatgctagcttgcctcttgtaaaa-ggaagcattcctctggtggaaaacnnnnnnnnnctcagacctttcaaagaacccataatttggtctta |
106 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||| || | |||| ||||||||||||||||||||||||||| |
|
|
| T |
9389794 |
cgaagaaaatgctagcttgcctctagtaaaaaggaagcattcctctggtggaacacaaaaaagctcatagacttttcaaagaacccataatttggtctta |
9389893 |
T |
|
| Q |
107 |
aataagtgaacacgcaaagatttgtgaagtttcaaagatg |
146 |
Q |
| |
|
|| |||||||||| | |||||||||||||||||||||||| |
|
|
| T |
9389894 |
aaaaagtgaacactcgaagatttgtgaagtttcaaagatg |
9389933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 9389950 - 9390006
Alignment:
| Q |
200 |
cttgacacaaacaacgtatcatctggtcatgagtcactcccttacaattcctataca |
256 |
Q |
| |
|
||||||||||| |||| |||||||| |||||| |||||| |||||||||| |||||| |
|
|
| T |
9389950 |
cttgacacaaaaaacgcatcatctgatcatgaatcactctcttacaattcatataca |
9390006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University